BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G37120.1

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg474248 jgi|Araly1|474248|fgenesh2_kg.1__4202__AT5G37120.1         481    1e-135
  Ahg474900 jgi|Araly1|474900|fgenesh2_kg.2__30__AT5G37120.1           403    3e-112


> Ahg474248 jgi|Araly1|474248|fgenesh2_kg.1__4202__AT5G37120.1
Length=296

 Score =  481 bits (260),  Expect = 1e-135
 Identities = 284/296 (96%), Gaps = 0/296 (0%)
 Strand=Plus/Plus

Query  1    ATGAAGCTAAGGAACAATAATCACATTTTCAAATGGGTTGATGAAGCTTTGATCAATGAG  60
            ||||||||||||||| || ||||| |||| ||||||||||||||||||||||||||||||
Sbjct  1    ATGAAGCTAAGGAACGATGATCACGTTTTTAAATGGGTTGATGAAGCTTTGATCAATGAG  60

Query  61   ATAGAGACATTGACAGCAAGGCATGGTGAAATCGAGAAGGAGCTGAAAGAGCTTAGAACA  120
            ||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
Sbjct  61   ATAGATACATTGACAGCAAAGCATGGTGAAATTGAGAAGGAGCTGAAAGAGCTTAGAAGA  120

Query  121  GAGAGGTTGGAGTTTGAGAAGATGGTTTCCGAGAAGGTGGAAATGAACATGGAGAAGGAG  180
            ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct  121  GAGAGGTTGGAGTTTGAGAAGATGGTTTCTGAGAAGGTTGAAATGAACATGGAGAAGGAG  180

Query  181  TTGAATGAGAAAGTTGAAGAAGCTTTGTCTGAAGCGAAAACAAGCAATAAGAAGATGATG  240
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TTGAATGAGAAAGTAGAAGAAGCTTTGTCTGAAGCGAAAACAAGCAATAAGAAGATGATG  240

Query  241  ATTGTCGTAGTGTTCGGGTGTATGATCATGATCGGATTCTCTAAACTTGTAGGATG  296
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  241  ATTGTCGTAGTGTTAGGGTGTATGATCATGATCGGATTCTCTAAACTTGTAGGATG  296


> Ahg474900 jgi|Araly1|474900|fgenesh2_kg.2__30__AT5G37120.1
Length=255

 Score =  403 bits (218),  Expect = 3e-112
 Identities = 242/254 (95%), Gaps = 0/254 (0%)
 Strand=Plus/Plus

Query  7    CTAAGGAACAATAATCACATTTTCAAATGGGTTGATGAAGCTTTGATCAATGAGATAGAG  66
            ||||||||| || ||||| |||| ||||||||||||||||||||||||||||||||||| 
Sbjct  1    CTAAGGAACGATGATCACGTTTTTAAATGGGTTGATGAAGCTTTGATCAATGAGATAGAT  60

Query  67   ACATTGACAGCAAGGCATGGTGAAATCGAGAAGGAGCTGAAAGAGCTTAGAACAGAGAGG  126
            ||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct  61   ACATTGACAGCAAAGCATGGTGAAATTGAGAAGGAGCTGAAAGAGCTTAGAAGAGAGAGG  120

Query  127  TTGGAGTTTGAGAAGATGGTTTCCGAGAAGGTGGAAATGAACATGGAGAAGGAGTTGAAT  186
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  121  TTGGAGTTTGAGAAGATGGTTTCCGAGAAGGTTGAAATGAACATGGAGAAGGAGTTGAAT  180

Query  187  GAGAAAGTTGAAGAAGCTTTGTCTGAAGCGAAAACAAGCAATAAGAAGATGATGATTGTC  246
            |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  181  GAGAAAGTAGAAGAAGCTTTGTCTGAAGCGAAAAGAAGCAATAAGAAGATGATGATTGTC  240

Query  247  GTAGTGTTCGGGTG  260
            |||||||| |||||
Sbjct  241  GTAGTGTTAGGGTG  254



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10416475797


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5