BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37130.1
Length=2866
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941232 jgi|Araly1|941232|scaffold_601776.1 3373 0.0
Ahg893637 jgi|Araly1|893637|Al_scaffold_0006_1633 2765 0.0
> Ahg941232 jgi|Araly1|941232|scaffold_601776.1
Length=2725
Score = 3373 bits (1826), Expect = 0.0
Identities = 2431/2712 (90%), Gaps = 85/2712 (3%)
Strand=Plus/Plus
Query 70 GTACCACCATGGTCGGCGGGGAAGTTAAAATTCTTCGCGGGTACGAACTCCGTCTCATCC 129
|||| |||||||||| ||| ||| || |||| |||||||| ||||| ||||||||| |||
Sbjct 18 GTACAACCATGGTCGACGGCGAAATTGAAATCCTTCGCGGTTACGAGCTCCGTCTCCTCC 77
Query 130 GGTGCACCGTCTCTTTGCCACTATCAGATCCTCCTCTCGATGAATCCCAACCCGGAACCC 189
||||||||||||| || ||| |||||||||||||||| ||||| || ||||| |
Sbjct 78 GGTGCACCGTCTCGTTAACACAATCAGATCCTCCTCTC---GAATCGCAGTCCGGAGTTC 134
Query 190 ATCCACACGACTCTCTTATAAAGTCCCTTTTGTCTTCAATCGAGGCTGGGA-ACTATCTT 248
||||| ||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||
Sbjct 135 ATCCATACGACTCTCTTATAAGGTCCCTTTTGTCTTCAATCGAGGCT-GGAGACTATCTT 193
Query 249 GAAGCTTTAGCCTCCGAAGCTACTAATCTAATACTC-G-GA----GAGTACG-AGT--TC 299
| |||| |||||||||| ||||||| |||||| || | || |||| || ||| |
Sbjct 194 GGAGCTCTAGCCTCCGACGCTACTAGGCTAATAATCGGAGATTCCGAGTTCGAAGTAGTT 253
Query 300 GACCCGGTTGATTCCGCCGAGCGAGTTTACTCCGAGCTTCTCAACAAAGTCGAATCGTTC 359
|| ||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||
Sbjct 254 GATACGGTTGATTCCGCTGAGCGAGTTTACTCCGAGCTTCTCTACAAGGTCGAATCGTTC 313
Query 360 GTGTTGAACGATTCTTCGGATGAAATCGATAAGGCTCGGCGTTCTTTTCTTGTGATGTGC 419
||||| ||||| ||||| |||||||||| ||||||||| ||| || |||| |||||||||
Sbjct 314 GTGTTAAACGAATCTTCAGATGAAATCGGTAAGGCTCGCCGTGCTGTTCTGGTGATGTGC 373
Query 420 TTAGCAATCGCGGCTGCTTTTTGGTTCACTTGTTGCAATTTGACCGGGTCGAC-GCAAGG 478
|||||||| ||||||||||||||||||||| | |||||||||||||||||||| | ||||
Sbjct 374 TTAGCAATTGCGGCTGCTTTTTGGTTCACTCGGTGCAATTTGACCGGGTCGACAG-AAGG 432
Query 479 ATCAACAAAATGTTCGTTACCGTTTAG-AGTACCAGAAAGTAAGGAATTGGTTGAATGGG 537
||||||||||||||||||||||||| | |||| |||||||||| ||| | ||||||||||
Sbjct 433 ATCAACAAAATGTTCGTTACCGTTT-GTAGTATCAGAAAGTAAAGAACTAGTTGAATGGG 491
Query 538 AGAACTGGGCTAAGATTCATCTCATGTCTGCAGGTTCTGACTTGCTCGGGAAGTTTTCTA 597
||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||
Sbjct 492 AGAACTGGGCTAAGATTCAGCTCATGTCTGTTGGTTCTGACTTGCTCGGGAAGTTTTTTA 551
Query 598 ATCTCCAGCATTTAGTTTTTGCTAGATTGCTGCTGTTAAAGTTGAAAGATTTGTTGTTTG 657
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 552 ATCTCCAGCATTTAGTTTTTGCTAGAATGCTTCTGTTAAAGTTGAAAGATTTGTTGTTTG 611
Query 658 AGACAAGTGCCTCTGAAACTTTTCAACTT-AGGAGTATTTCATGGTGGCTTGTCAGAGTC 716
|||||| ||| ||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 612 AGACAACTGCAACTGAAACTTTTGAA-TTAAGGAGTATTTCATGGTGGCTTGTCAGAGTT 670
Query 717 TTACTTATTCATCAAAGAGTTCTTCACGAGCCATCTTCATCTTTGTTTGAGATGTTGCAA 776
|||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 671 TTACTTATCCATCAAAGAGTTCTACACGAGCGATCTTCATCTTTGTTTGAGATGTTGCAA 730
Query 777 GTTTACATGGCCGAAGCTCTAGACCATTTTGGAGCATTGGAAAAAGTCGAAAGCTACTGG 836
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 731 GTTTACATGGCCGAAGCTCTAGACCATTTTGGAGCATTGGAAAAAGTAAAAAGCTACTGG 790
Query 837 GGTGCCAAGTTGCTACAAGACGAAGCTTCATCCATCACGTCAATCATCCATCTGGAAGCA 896
||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||
Sbjct 791 GGTGCCAAGTTGCTAGTAGACGAAGCTTCATCCATCACGTCAACCATCCATCTGGAGGCA 850
Query 897 TGTGTACTGCAATATATATATCGAAGGATTGACCCTTTTCGGTTGCAGCTTGAATCTGCT 956
||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||
Sbjct 851 TGTGTACTGCAATATATATATGGAAGGATTGATCCTGCTCGGTTGCAGCTTGAATCTGCT 910
Query 957 AAAGCAGCAGCAGGGCTAGAGTTCTCTGTTACTGGGGCTCTGGGATTTCGTACTATTCAC 1016
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 911 AAAGCAGCAGCAGGGCTAGAGTTCTCTGTTACCGGGGCTCTTGGATTTCGTACTATTCAC 970
Query 1017 CAAGTAG-TGCCAAAGGCACAGATGGTATTGGTAGCCAATACTAGCTCATCCAATGGGGC 1075
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 CAAGTAGAT-CCAAAGGCACAGATGGTATTGGTAGCCAATACTAGCTCATCCAATGGGGA 1029
Query 1076 TGTGAGGTTGGCCTCTGAGAAAGCTGATGTTGGACCTTATGGAGCTTGGGAAGGTGAAAC 1135
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
Sbjct 1030 TGTGAGGTTGGCCTCTGAGAAAGCTGATGTTGGACCTTATGAAGCTTGGGGAGGTGAAGC 1089
Query 1136 ACCTCAAGTGTTTATGACTCCCAAACTAGTGAACAACGAGAGTGAAGCTGGCACAGATTC 1195
|||| |||| | |||||||||||||||||| |||||||||||||||||||| | ||||||
Sbjct 1090 ACCTGAAGTATATATGACTCCCAAACTAGTAAACAACGAGAGTGAAGCTGGGAAAGATTC 1149
Query 1196 AGTGCCCTTAAAACCAGTTGAACAGGCATTGATTTTGGCCCAGTGCCTTCTAATTGAAAG 1255
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 TGTGCCCTTAAAACCAGTTGAACAGGCATTGATTTTGGCCCAGTGCCTTCTAATTGAAAG 1209
Query 1256 GGGTAGTCGGCACGATGCA-ATGCAAAGTTGGGATATGGCTCCATATATTGAGGCAATTG 1314
||||||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct 1210 GGGTAGTAGGCACGATG-AGATGCAAAGATGGGATATGGCTCCATATATTGAGGCAATTG 1268
Query 1315 ATTCTCAAAAGTCAAC-CTATTTTGTTCTACGGTGTTTTTGTGACTTATTGCGTGTTCGA 1373
|||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1269 ATTCTCAAAAGTCAACAC-ATTTTGTTCTACGGTGTTTTTGTGACTTATTACGTGTTCGA 1327
Query 1374 TGGGAATCATCTCGATATCGTAC-AAGGGAACGCGCCCGGGATATGATGGATAAGCTGGT 1432
||||||||| || || |||||| ||||| |||||||| ||| ||||||||||| ||||
Sbjct 1328 TGGGAATCAACTAGAGGTCGTACAAAGGG-ACGCGCCCTGGAGATGATGGATAAATTGGT 1386
Query 1433 TGGAGCTATTAGCAAGAGCGATCCTGGAGTATCAAATCGGATCCCTTTATGCTATGCAGT 1492
||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1387 TGGAGCTATTAACAAGAGCGATCCTGGAGTATCAAACCGTATCCCTTTATGCTATGCAGT 1446
Query 1493 GTATCTTCCTACTATTCCTGCTTTGAGAAAGGAATATGGTGAGCTTCTGGTGAGTTGTGG 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1447 CCATCTTCCTACTATTCCTGCTTTGAGAAAGGAATATGGTGAGCTTCTGGTGAGTTGCGG 1506
Query 1553 TTAT-GTTGGGGAAGCAATCACAATATTTGAGAGCCTGGAATTGTGGGATAATCTAATTT 1611
|| | |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1507 TT-TGGTTGGGGAAGCAATCACAATATTTGAGAGCCTGGAACTGTGGGATAATCTAATCT 1565
Query 1612 ACTGCTACTG-CTCCATGGGAAAGAAATCAGCGGCTGTAGATCTCATCAATGCACGGCTT 1670
|||||||||| || | |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1566 ACTGCTACTGCCTTC-TGGGAAAGAAATCAGCAGCTGTAGATCTCATCAATGCACGGCTT 1624
Query 1671 CTTGAACGCCCAAATGACCCAAGATTATGGTGTTCATTGGGTGATGTTACGATTTCCGAT 1730
|||||| ||||||||||||||||||||||||||| ||||||||||||| ||| |||
Sbjct 1625 GATGAACGGCCAAATGACCCAAGATTATGGTGTTCACTGGGTGATGTTACTATTAATGAT 1684
Query 1731 TCCTGTTATGAAAAAGCCCTGGAAGTTTCAAATGACAAATCAGTTCGTGCTAAGCGGGCT 1790
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1685 TCCTGTTATGAAAAAGCCCTGGAAGTTTCAAATGATAAGTCAGTTCGTGCTAAGCGGGCT 1744
Query 1791 CTTGCTCGAAGCGCATACAATCGCGGTGATTTTGAGAAGTCGAAGATACTGTGGGAGGCT 1850
||||| || ||||| |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1745 CTTGCACGCAGCGCCTACAATCGGGGTGATTTTGAGAAGTCGAAGATGCTGTGGGAGGCT 1804
Query 1851 GCAATGGCGTTAAATTCTCTGTATTCAGATGGTTGGTTTGCTCTTGGTGCTGCTGCGTTG 1910
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1805 GCAATGGCCTTAAATTCTCTGTACCCAGATGGTTGGTTTGCTCTTGGTGCTGCTGCATTG 1864
Query 1911 AAGGCCAGGGATCTTCAGAAAGCACTGGATGCATTCACTTTAGCTGTTCATCTTGATCCT 1970
|||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1865 AAGGCCAGGGATGTTCAGAAAGCACTGGATGCATTCACTTTTGCTGTTCAACTTGATCCC 1924
Query 1971 GACAATTGGCTGGCTTGGAACAACATTGCTAGTCTGCATATGATTAAGAAAAAGAGCAAA 2030
|||||| || ||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1925 GACAATGGGGAGGCTTGGAACAACATTGCTTGTCTGCATATGATAAAGAAAAAGAGCAAA 1984
Query 2031 GAATCATTCATTGCATTCAAAGAAGTGCTTAAATTAAACCGAGACAGCTGGCAGATATGG 2090
|||||||||||||| |||||||||| |||||||| || ||||| ||||||||||| |||
Sbjct 1985 GAATCATTCATTGCGTTCAAAGAAGCACTTAAATTCAAGCGAGATAGCTGGCAGATGTGG 2044
Query 2091 GAGAATTTCAGCCATGTAGCTATGGATGTGGGAAATACTGATCAGGCCTTTGAAGCTATA 2150
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2045 GAGAATTTCAGTCATGTAGCTATGGATGTGGGAAATATTGATCAGGCCTTTGAAGCTATA 2104
Query 2151 CAACAGATAATGAGATTGACCCAAAACAAGA--GTATCAGTGTTGTTTTATTGGACCGTT 2208
||||||||| ||| | ||| | ||||||||| || | | |||||||||||||||||||
Sbjct 2105 CAACAGATACTGAAAATGAGCAAAAACAAGAGGGT-TGA-TGTTGTTTTATTGGACCGTA 2162
Query 2209 TAATGACAGA-TTTG--GA-A--AA-T-AG---G-AA-T-A---T-ATC-A-T---A-CG 2244
|||||||||| || | | | || | || | || | | | ||| | | | ||
Sbjct 2163 TAATGACAGAGTTAGAAAATAGGAATTCAGCATGTAAGTCATCTTCATCGATTGAAACCG 2222
Query 2245 AATCTTCTTCAAATGAATTAATA-AAGACAAAACCA---A---CAACGACC-G--AAAGA 2294
|| |||||||| |||||| | | || ||||||||| | |||| ||| | || |
Sbjct 2223 AAACTTCTTCAGATGAATCAGCAGAA-ACAAAACCATGTACTGCAAC-ACCAGCTGAA-A 2279
Query 2295 CTCTA---CA--TAGAGTTGTTTGGGAAAATTATTCAGCAGATTGTCAAAACAGAAAGTA 2349
||| | || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2280 CTCAACGCCAGCTAGAGTTGCTTGGGAAAATTATTCAGCAGATTGTCAAAACAGAAAGTA 2339
Query 2350 CATTTGAAAACTGGGGATTATACGCAAGATGGAGTAGAATCAATGGAGATCTTACGATAT 2409
||| ||||| |||||||||||| |||||||||||||||||||| |||||||||| | |||
Sbjct 2340 CATCTGAAATCTGGGGATTATATGCAAGATGGAGTAGAATCAAAGGAGATCTTATGGTAT 2399
Query 2410 GTAGCGAGGCACTGTTAAAACAAGTGCGATCATATCTGGGGGT-AGAAATGTGGAAAGAC 2468
| ||||||||||||||||| |||||||||||||||| ||| | |||| | |||||||||
Sbjct 2400 GCAGCGAGGCACTGTTAAAGCAAGTGCGATCATATC-AGGGATCAGAAGTTTGGAAAGAC 2458
Query 2469 AAAGAGCGTTTCAAGAAGTTTGCAAGAGCATCATTGGAACTTTGTAGAGTGTACATAGAG 2528
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 2459 AAAGAGCGTTTCAAGAATTTTGCAAGAGCATCATTGGAACTTTGTAGAGTGTACATGGAG 2518
Query 2529 ATCTCAGCGTCTGTAGAAAGCAAACGAGAACTGTTTAGTGCTGAGATGCATTTGAAGAAC 2588
||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2519 ATCTCAGTGTCCACAGGAAGCAAACGAGAACTGTTTAGTGCTGAGATGCATTTGAAGAAC 2578
Query 2589 ACAATCAAACAAGCTAGAAAGAGCTT-TGGTGAGACTGAAGAATTGAAGGAGCTTGAAAG 2647
|||||||||||||||| || |||||| | | || ||||||||||||||||| ||||||||
Sbjct 2579 ACAATCAAACAAGCTACAATGAGCTTCTTG-GACACTGAAGAATTGAAGGAACTTGAAAG 2637
Query 2648 TTGCCTTGAGGAGGTCAGAAATGTTACGCAGAAGT-T--TGAAGGGACTACAAACATTAA 2704
||||||||||||||| |||||||| | ||||||| | ||||| ||||| ||| | ||
Sbjct 2638 TTGCCTTGAGGAGGTGAGAAATGTAATGCAGAAGAGTGATGAAGAGACTAGAAATACAAA 2697
Query 2705 AACATAAAAGAA 2716
|| || ||||||
Sbjct 2698 AATATGAAAGAA 2709
> Ahg893637 jgi|Araly1|893637|Al_scaffold_0006_1633
Length=2616
Score = 2765 bits (1497), Expect = 0.0
Identities = 1794/1934 (93%), Gaps = 34/1934 (2%)
Strand=Plus/Plus
Query 78 ATGGTCGGCGGGGAAGTTAAAATTCTTCGCGGGTACGAACTCCGTCTCATCCGGTGCACC 137
||||| | ||| |||||| ||| ||||| || || || ||||||||| |||||||||||
Sbjct 1 ATGGTTGACGGCGAAGTTGAAACCCTTCGAGGTTATGAGCTCCGTCTCCTCCGGTGCACC 60
Query 138 GTCTCTTTGCCACTATCAGATCCTCCTCTCGATGAATCCCAACCCGGAACCCATCCACAC 197
|||||||| ||| | ||||||| |||||| |||||||| |||| |||||||||
Sbjct 61 GTCTCTTTAACACAACCAGATCCCCCTCTC---GAATCCCAGTTCGGAGTTCATCCACAC 117
Query 198 GACTCTCTTATAAAGTCCCTTTTGTCTTCAATCGAGGCTGGGAACTATCTTGAAGCTTTA 257
||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||| ||
Sbjct 118 GACTCTCTTATAACGTCCCTTTTGTCTTCAATCGAGGCTGGAAACTATCTTGGAGCCCTA 177
Query 258 GCCTCCGAAGCTACTAATCTAATACTC-G-GA----GAGTACGA---GTTCGACCCGGTT 308
|||||||| |||||||| ||||||||| | || |||| ||| | ||||| |||||
Sbjct 178 GCCTCCGACGCTACTAAGCTAATACTCGGCGATTCCGAGTTCGACCTGGTCGACTCGGTT 237
Query 309 GATTCCGCCGAGCGAGTTTACTCCGAGCTTCTCAACAAAGTCGAATCGTTCGTGTTGAAC 368
|||||||| || |||||||| ||| |||||||| |||| ||||||||||||||| |||||
Sbjct 238 GATTCCGCTGAACGAGTTTATTCCCAGCTTCTCGACAAGGTCGAATCGTTCGTGGTGAAC 297
Query 369 GATTCTTCGGATGAAATCGATAAGGCTCGGCGTTCTTTTCTTGTGATGTGCTTAGCAATC 428
||||| || ||||||||||| |||||||| ||| || |||| ||||||||||||||||||
Sbjct 298 GATTCGTCAGATGAAATCGACAAGGCTCGCCGTGCTGTTCTGGTGATGTGCTTAGCAATC 357
Query 429 GCGGCTGCTTTTTGGTTCACTTGTTGCAATTTGACCGGGTCGACGCAAGGATCAACAAAA 488
||||||||||| ||||||||| | ||||||||||||||||||||| |||||||||| |||
Sbjct 358 GCGGCTGCTTTGTGGTTCACTCGGTGCAATTTGACCGGGTCGACGGAAGGATCAAC-AAA 416
Query 489 TGTTCGT-TACCGTTTAGAGTACCAGAAAGTAAGGAATTGGTTGAATGGGAGAACTGGGC 547
||| | |||||||| | | || | | || ||||||||||||||||||||
Sbjct 417 --TTC-TGTACCGTTT--A--A--AG--A-T------TTAGTTGAATGGGAGAACTGGGC 458
Query 548 TAAGATTCATCTCATGTCTGCAGGTTCTGACTTGCTCGGGAAGTTTTCTAATCTCCAGCA 607
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 459 TAAGATTCAGCTCATGTCTGCAGGTTCTGACTTGCTCGGGAAGTTTTCTAATCTCCAACA 518
Query 608 TTTAGTTTTTGCTAGATTGCTGCTGTTAAAGTTGAAAGATTTGTTGTTTGAGACAAGTGC 667
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 519 TTTAGTTTTTGCTAGATTGCTTCTGTTAAAGTTGAAAGATTTGTTGTTTGAGACAACTGC 578
Query 668 CTCTGAAACTTTTCAACTT-AGGAGTATTTCATGGTGGCTTGTCAGAGTCTTACTTATTC 726
||||||||||| || || ||||||||||||||||||||||||||||| |||||||| |
Sbjct 579 AACTGAAACTTTTGAA-TTAAGGAGTATTTCATGGTGGCTTGTCAGAGTTTTACTTATCC 637
Query 727 ATCAAAGAGTTCTTCACGAGCCATCTTCATCTTTGTTTGAGATGTTGCAAGTTTACATGG 786
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 638 ATCAAAGAGTTCTACACGAGCGATCTTCATCTTTGTTTGAGATGTTGCAAGTTTACATGG 697
Query 787 CCGAAGCTCTAGACCATTTTGGAGCATTGGAAAAAGTCGAAAGCTACTGGGGTGCCAAGT 846
||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||
Sbjct 698 CCGAAGCTCTAGACCATTTTGGAGCATTGGAAAAAGTAAAAAGTTACTGGGGTTCCAAGT 757
Query 847 TGCTACAAGACGAAGCTTCATCCATCACGTCAATCATCCATCTGGAAGCATGTGTACTGC 906
| ||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 758 TACTAGAAGACGAAGCTTCATCCATTACGTCAACCATCCATCTGGAAGCATGTGTACTGC 817
Query 907 AATATATATATCGAAGGATTGACCCTTTTCGGTTGCAGCTTGAATCTGCTAAAGCAGCAG 966
||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 818 AATATATATATGGAAGGATTGATCCTTCTCGGTTGCAGCTTGAATCTGCTAAAGCAGCAG 877
Query 967 CAGGGCTAGAGTTCTCTGTTACTGGGGCTCTGGGATTTCGTACTATTCACCAAGTAGTGC 1026
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 878 CAGGGCTAGAGTTCTCTGTTACCGGGGCTCTTGGATTTCGTACTATTCACCAAGTAGTAC 937
Query 1027 CAAAGGCACAGATGGTATTGGTAGCCAATACTAGCTCATCCAATGGGGCTGTGAGGTTGG 1086
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 938 CAAAGGCGCAGATGGTATTGGTAGCCAATACTAGCTCATCCAATGGGGATGTGAGGTTGG 997
Query 1087 CCTCTGAGAAAGCTGATGTTGGACCTTATGGAGCTTGGGAAGGTGAAACACCTCAAGTGT 1146
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 998 CCTCTGAGAAAGCTGATGTTGGACCTTATGGAGCTTGGGAAGGTGAAACACCTCAAGTAT 1057
Query 1147 TTATGACTCCCAAACTAGTGAACAACGAGAGTGAAGCTGGCACAGATTCAGTGCCCTTAA 1206
||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||
Sbjct 1058 TTATGACTCCCAAACTAGTGAACAACGAGAGTGAATCTGGCAAAGATTCTGTGCCCTTAA 1117
Query 1207 AACCAGTTGAACAGGCATTGATTTTGGCCCAGTGCCTTCTAATTGAAAGGGGTAGTCGGC 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 AACCAGTTGAACAGGCATTGATTTTGGCCCAGTGCCTTCTAATTGAAAGGGGTAGTCGGC 1177
Query 1267 ACGATGCAATGCAAAGTTGGGATATGGCTCCATATATTGAGGCAATTGATTCTCAAAAGT 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 ACGATGCAATGCAAAGTTGGGATATGGCTCCATATATTGAGGCAATTGATTCTCAAAAGT 1237
Query 1327 CAACCTATTTTGTTCTACGGTGTTTTTGTGACTTATTGCGTGTTCGATGGGAATCATCTC 1386
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 CAACATATTTTGTTCTACGGTGTTTTTGTGACTTATTGCGTGTTCGATGGGAATCATCTC 1297
Query 1387 GATATCGTACAAGGGAACGCGCCCGGGATATGATGGATAAGCTGGTTGGAGCTATTAGCA 1446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 GATATCGTACAAGGGAACGCGCCCGGGATATGATGGATAAGCTGGTTGGAGCTATTAGCA 1357
Query 1447 AGAGCGATCCTGGAGTATCAAATCGGATCCCTTTATGCTATGCAGTGTATCTTCCTACTA 1506
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1358 AGAGCGATCCTGGAGTATCAAATAGGATCCCTTTATGCTATGCAGTGTATCTTCCTACTA 1417
Query 1507 TTCCTGCTTTGAGAAAGGAATATGGTGAGCTTCTGGTGAGTTGTGGTTATGTTGGGGAAG 1566
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1418 TTCCTGCTTTGAGAAAGGAATATGGTGAGCTTCTGGTGAGTTGCGGTTATGCTGGGGAAG 1477
Query 1567 CAATCACAATATTTGAGAGCCTGGAATTGTGGGATAATCTAATTTACTGCTACTGCTCCA 1626
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1478 CAATCACAATATTTGAGAGCCTGGAACTGTGGGATAATCTAATTTACTGCTACTGCTCCA 1537
Query 1627 TGGGAAAGAAATCAGCGGCTGTAGATCTCATCAATGCACGGCTTCTTGAACGCCCAAATG 1686
|| ||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||
Sbjct 1538 TGCAAAAGAAATCAGCGGCTGTACATCTCATCAAAGCACGGCTTCATGAACGCCCAAATG 1597
Query 1687 ACCCAAGATTATGGTGTTCATTGGGTGATGTTACGATTTCCGATTCCTGTTATGAAAAAG 1746
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1598 ACCCAAGATTATTGTGTTCATTGGGTGATGTTACGATTAACGATTCCTGTTATGAAAAAG 1657
Query 1747 CCCTGGAAGTTTCAAATGACAAATCAGTTCGTGCTAAGCGGGCTCTTGCTCGAAGCGCAT 1806
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 1658 CCCTGGAAGTTTCAAATGACAAGTCAGTTCGTGCTAAGCGGGCTCTTGCTCGCAGCGCCT 1717
Query 1807 ACAATCGCGGTGATTTTGAGAAGTCGAAGATACTGTGGGAGGCTGCAATGGCGTTAAATT 1866
|||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 1718 ACAATCGCGGTGATTTTGAGAAGTCGAAGATACTGTGGGAGGCTGCAATGTCCTTGAATT 1777
Query 1867 CTCTGTATTCAGATGGTTGGTTTGCTCTTGGTGCTGCTGCGTTGAAGGCCAGGGATCTTC 1926
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1778 CTCTGTATCCAGATGGTTGGTTTGCTCTTGGTACTGCTGCGTTGAAGGCCAGGGATGTTC 1837
Query 1927 AGAAAGCACTGGATGCATTCACTTTAGCTGTTCATCTTGATCCTGACAATTGGCTGGCTT 1986
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1838 AGAAAGCACTGGATGCATTCACTTTCGCTGTTCATCTTGATCCTGACAATTGGCAGGCTT 1897
Query 1987 GGAACAACATTGCT 2000
||||||||||||||
Sbjct 1898 GGAACAACATTGCT 1911
Score = 296 bits (160), Expect = 6e-79
Identities = 208/231 (90%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 2453 AGAAATGTGGAAAGACAAAGAGCGTTTCAAGAAGTTTGCAAGAGCATCATTGGAACTTTG 2512
|||| ||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 2343 AGAAGTGTGGAAAGACGACGACCGTTTCAAGAAGTTTGCAAGAGCATCATTGGAACTTTG 2402
Query 2513 TAGAGTGTACATAGAGATCTCAGCGTCTGT-AGAAAGCAAACGAGAACTGTTTAGTGCTG 2571
|||||||||||| ||||| |||| ||| | || ||||| |||||||||||| |||||||
Sbjct 2403 TAGAGTGTACATGGAGATGTCAGTGTC-GACAGGAAGCAGACGAGAACTGTTGAGTGCTG 2461
Query 2572 AGATGCATTTGAAGAACACAATCAAACAAGCTAGAAAGAGCTTTG-GTGAGACTGAAGAA 2630
||||||||||||||||||||||||||||||||||| ||||||| | || |||| ||||
Sbjct 2462 AGATGCATTTGAAGAACACAATCAAACAAGCTAGAGAGAGCTTCCCG-GATACTGCAGAA 2520
Query 2631 TTGAAGGAGCTTGAAAGTTGCCTTGAGGAGGTCAGAAATGTTACGCAGAAG 2681
||||| |||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 2521 TTGAAAGAGCTTGAAAGTTGCCTTGAGGAGGTGAGAAATGTTATGCAGAAG 2571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108176295800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5