BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37160.1
Length=2616
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493692 jgi|Araly1|493692|fgenesh2_kg.7__3125__AT5G37160.1 3251 0.0
Ahg891304 jgi|Araly1|891304|Al_scaffold_0007_3290 1173 0.0
Ahg947346 jgi|Araly1|947346|scaffold_703575.1 1053 0.0
Ahg355656 jgi|Araly1|355656|fgenesh1_pg.C_scaffold_7002829 915 0.0
> Ahg493692 jgi|Araly1|493692|fgenesh2_kg.7__3125__AT5G37160.1
Length=2604
Score = 3251 bits (1760), Expect = 0.0
Identities = 2345/2621 (89%), Gaps = 66/2621 (3%)
Strand=Plus/Plus
Query 1 ATGGACACTAAAGAGATACGAAAGCTCTTGGaaaaaaaCGAGCAAACAAGTCTTTTCGCT 60
||||| | ||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1 ATGGATAATAAAGAGATACGAAAGCTCTTGGAAAATAACGAGCAAACAAGTCTGTTCGCT 60
Query 61 AGACTATGTTCTTGGTC-ACTCAAAGATATCCTCAACGAAGATCTCTCCAAGGAAAAGAT 119
||| ||||||||||||| | |||||||||| |||||||||||||||| ||| |||||| |
Sbjct 61 AGAGTATGTTCTTGGTCTA-TCAAAGATATTCTCAACGAAGATCTCTACAAAGAAAAGTT 119
Query 120 AATGACAATACCAGACAGATTTAGTTCCGTTGATGAATACTCTCAGTGTTTTGTTCCTCA 179
|| ||||||||||||||||||||||| || |||||||||| ||||||||||||||||||
Sbjct 120 AAAAACAATACCAGACAGATTTAGTTCTGTCGATGAATACTTTCAGTGTTTTGTTCCTCA 179
Query 180 TTTACTCGAGGAAACACGAACTGAGTTGTTCTCGAGCTTCAGATCTTTATCGAAATCTCC 239
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||
Sbjct 180 TTTACTCGAGGAAACACGAACCGAGTTGTTCTCGAGCTTCATATCTTTATCGAAAGCTCC 239
Query 240 TGTCTCACGAATACTTTCTGTGGAGACAAAAG-TGAT-TGAATATAGTGGAAGGTCATCG 297
|||| |||||||||||||| ||||| |||| | || ||||| ||||||||||||||||
Sbjct 240 CGTCTGTCGAATACTTTCTGTTGAGAC-AAAGAT-ATATGAATTTAGTGGAAGGTCATCG 297
Query 298 ATCAAG-TGGTTCCATGATATTAAATTAATGGATTATGCAGACGATAAAAACGAAATA-T 355
|||||| | |||||||||||||||||||||||||||||||||||| |||| |||| | |
Sbjct 298 ATCAAGAT-GTTCCATGATATTAAATTAATGGATTATGCAGACGACAAAAGTGAAA-AGT 355
Query 356 ATGAGCCAAAGTGTGGAGATATTATTGCACTGAGTCCTCTGAGTTTGACAGAAGAAAGGC 415
| |||||||||||||||||||| |||||| |||||||||||||||||||||| ||||| |
Sbjct 356 ACGAGCCAAAGTGTGGAGATATAATTGCATTGAGTCCTCTGAGTTTGACAGAGGAAAGAC 415
Query 416 CAAGAATCGATGACTTGGATCCTTTACTTCTAGGTTACGTTTTCTCTGTGTATGGTGATT 475
||||||| ||| ||||| |||||||||||||||||||||| |||||||||| ||||||||
Sbjct 416 CAAGAATTGATTACTTGAATCCTTTACTTCTAGGTTACGTCTTCTCTGTGTTTGGTGATT 475
Query 476 CTAAAATCTCTGTTCACTTCTCTAGATCCATTTCTCAGAGTGAGAAACATACATTTTGCA 535
||||||||||||||||||||||||||| || |||||||||||||||||| ||||| ||
Sbjct 476 ATAAAATCTCTGTTCACTTCTCTAGATCAATCTCTCAGAGTGAGAAACATTCATTTCGCT 535
Query 536 CAGGTGTTTTTCTCATTAATATAACCACAAACACTCGAATTTGGAACGCTTTACACAAGG 595
| ||| | |||||||| | | ||||||||||||||||||||||||||||||| ||||| |
Sbjct 536 CTGGTATATTTCTCATGACTTTAACCACAAACACTCGAATTTGGAACGCTTTGCACAACG 595
Query 596 ATGCTGCCGATTCCACTCTGATCCAGAGTGTCCTTCAGGAAGATGCTTCGGCTACAGAAC 655
| | ||||||||| |||| | | | | | | ||| | | ||||||||||
Sbjct 596 AAGTTGCCGATTCTACTC---T--A-A---T-C--C----AGA-G--T--GCTACAGAAC 634
Query 656 AATGTTTTTCTTGTGAAAATGATGTTGATGGTTCTGATTCTGACCGTGTTGTCGATATAA 715
|||| |||||||||| |||||||| ||||||||||||||||||| ||||| | |||| ||
Sbjct 635 AATGCTTTTCTTGTGGAAATGATGATGATGGTTCTGATTCTGACAGTGTTTTGGATAGAA 694
Query 716 TACGTTCAGCAAAACTGAACTCTTCCCAAGAAGCTGCGATTTTGGGTTTCCTTAAGACAA 775
| ||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||
Sbjct 695 TTCGTTCAGCAAAACTGAACTCTTCCCAAGAAGCTGCAATTTTTGGTTGCCTTAAGACAA 754
Query 776 GGAATTGTAAACACAAGGAGAGTGTGAAACTGATATGGGGACCTCCTGGTACAGGC-AAA 834
|||||||||| |||||| ||||||||||||||||||||||||||||||| | || |||
Sbjct 755 GGAATTGTAATCACAAGAAGAGTGTGAAACTGATATGGGGACCTCCTGG---A-GCAAAA 810
Query 835 ACA-AAGACGGTCGCGACACTTCTCTCTACTCTTATGCAACTAAAGTGCAAAACAGTTGT 893
||| |||| || |||| ||||||||| ||||||| |||||||||||||||||||||||
Sbjct 811 ACACAAGA-TATCACGACTCTTCTCTCTGCTCTTATCCAACTAAAGTGCAAAACAGTTGT 869
Query 894 ATGTGCTCCTACAAACACAACTATTGTAGCAGTAGCGTCAAGGTTATTATCTTTATCTAA 953
|||||||||||||||||| ||||||| ||||| || || |||||||| ||||||||||
Sbjct 870 GTGTGCTCCTACAAACACAGCTATTGTTGCAGTTGCATCGAGGTTATTGGCTTTATCTAA 929
Query 954 GGAAACAATTGTGTGTGCTCCAACCAACTCGGCTATCGCAGAAGTAGTATCAAGGTTCGA 1013
||||||||||||||||||||| || ||||| ||||| || ||||| ||||||||||||
Sbjct 930 GGAAACAATTGTGTGTGCTCCTACAAACTCTGCTATTGCTGAAGTGGTATCAAGGTTC-- 987
Query 1014 ATTCTCTACCTTATTCTATGGAACTTCTATATTAGAACGTACCACTTACGGTATGGGGAA 1073
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 --TC-GT-CCTTATTCTATGGAACTTCTATATTAGAACGTACCACTTACGGTATGGGGAA 1043
Query 1074 TATAGTTCTATCTGGAAACCGCGAGAGAATGGGAATTACGAGCAATAAAGTTCTTCTCAA 1133
||||||||||||||| |||||||| |||||||| |||| || ||||||||||||||||||
Sbjct 1044 TATAGTTCTATCTGGTAACCGCGAAAGAATGGGGATTAAGAACAATAAAGTTCTTCTCAA 1103
Query 1134 TGTGTTTTTTAATGACCGCGTTAGTAAACTTGGTAGACTGTTTTTATCTACTTGTGGATG 1193
||||||||| ||||| || |||||||||||||| ||||| ||||| ||||| ||||||||
Sbjct 1104 TGTGTTTTTCAATGATCGTGTTAGTAAACTTGGCAGACTCTTTTTGTCTACATGTGGATG 1163
Query 1194 GAAGAAGAGGTTAGAGTCAATCATAGATTTTCTTGAGAACACAGAGACTAAGTACGAGCA 1253
|||||||||||| |||||| ||||||||||||||||||| |||||| ||||||| |||||
Sbjct 1164 GAAGAAGAGGTTGGAGTCAGTCATAGATTTTCTTGAGAATACAGAGGCTAAGTATGAGCA 1223
Query 1254 ACATGTAAATGAACTAG-AG--CTtgaaagaatgacagaagatgaaaagaa-gaag--g- 1306
||||||| ||||| ||| || ||| | || || ||||| || ||||| |||| |
Sbjct 1224 ACATGTACATGAATTAGAAGAACTTCATAGGATTTTGGAAGAGGAGAAGAAGGAAGATGA 1283
Query 1307 -aagaag-ttg-aa--gagaggacgatgcaagaagTTG---ATATGGCTGATTTGAGCAC 1358
|||||| | || || | || || | |||||| || |||||| ||||||| ||||
Sbjct 1284 AAAGAAGAAAGAAACCGAAAAGAAGAAGGAAGAAGCTGAAAATATGGTTGATTTGTGCAC 1343
Query 1359 TCATCTGCCTAAGTCTTTCATTTCATCTAAAGATGTCAAGAATTTGATAGCAGCCTGCCA 1418
|||||| ||||||||||||||||||||||||||||| |||||| ||||||||||| ||||
Sbjct 1344 TCATCTACCTAAGTCTTTCATTTCATCTAAAGATGTGAAGAATATGATAGCAGCCCGCCA 1403
Query 1419 AGCGCTTCACCGTGTTAGATATTTCTTGCAGGAGAATTCTTCTAGAGATGATTTCAAGAA 1478
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1404 AGCGCTTCACCGTGTTAGAGATTTCTTGCAGGAGAATTCATCTAGAGATGATTTCAAGAA 1463
Query 1479 AGGTGGTTTTAGATTCAATTGCTTCAACAAACTCATCAGTGTTGATGCCCTTCAGGCTCT 1538
|||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 1464 AGGTGGTTTTAGATTCAATTGCTTTAACAAACTCATCAGTGTTGATGCTATTGAGGCTCT 1523
Query 1539 CTGTCTACTTCCAAAATGTTTTGGGATTTTTGGTTTAGCAAATAATGAAGATATTA-GAA 1597
|||||||||||||||||||||||||||||||| |||| |||| |||||||||| | |||
Sbjct 1524 ATGTCTACTTCCAAAATGTTTTGGGATTTTTGGCTTAGAAAATTATGAAGATATCAGGAA 1583
Query 1598 AGTTTTGTCTACAAAATGCTGACATAATATTCTGCACAGCCTCAAGTGTTGCTAATATCA 1657
| ||||||||||||||||| || ||||| ||||||||||||||||||| || |||||
Sbjct 1584 A-TTTTGTCTACAAAATGCAGATATAATCCTCTGCACAGCCTCAAGTGTGGCCAATATGG 1642
Query 1658 ATCCGGCGAGGATAGGCTCTGTGGACCTTCTTGTGGTAGATGAGACAGCTCAGCTTAAGG 1717
||||| |||||||||||||| |||||||| ||||| |||||| ||||||||||||| |
Sbjct 1643 TTCCGGAAAGGATAGGCTCTGTCGACCTTCTCGTGGTCGATGAGGCAGCTCAGCTTAAAG 1702
Query 1718 AATGTGAATCAGTTGCTGCATTGCAACTTCCTGGACTTTGTCATGCTCTTCTAATAGGAG 1777
|||||||||||||| | ||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1703 AATGTGAATCAGTTACCGCATTGCAACTTCCTGGACTTCGTCATGCGCTTCTAATAGGAG 1762
Query 1778 ATGAGTATCAGTTGCCTGCAATGGTTCATAACGAGGAATGCGATAAGGCGAAATTCGGAA 1837
||||||||||||| |||||||||||||| | | |||||||||| ||||||||||||||||
Sbjct 1763 ATGAGTATCAGTTACCTGCAATGGTTCACAGCAAGGAATGCGAAAAGGCGAAATTCGGAA 1822
Query 1838 GAAGCTTGTTTGAGAGATTGGTTTTGATTGGTCATAGCAAACATTTGCTTAATGTTCAGT 1897
|||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||| |
Sbjct 1823 GAAGCTTGTTCGAGAGATTGGTTTTGATTGGTCATAACAAACATTTGCTAAATGTTCAAT 1882
Query 1898 ATCGAATGCATCCTTCCATTAGTCGTTTCCCTAATAAGGAGTTTTATGGTGGGAGAATCA 1957
|||| ||||||||||| |||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1883 ATCGGATGCATCCTTCGATTAGTTGTTTCCCTAATAAGGAGTTTTATGATGGGAGAATCA 1942
Query 1958 CTGATGC-TGCAAATGTTCAAGAAAGCATTTACGAGAAGAGGTTTCTTCAAGGAAACATG 2016
||||||| | | | |||||||||| |||||||||| ||| |||||||||| ||||| |||
Sbjct 1943 CTGATGCAT-CGATTGTTCAAGAACGCATTTACGAAAAGCGGTTTCTTCAGGGAAAAATG 2001
Query 2017 TTTGGTACTTTCTCATTTATCAATGTGGGACGTGGGAAAGAAGAGTTTGGTGATGGACAT 2076
|||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2002 TTTGGTTCTTTCTCTTTTATCAATGTGGGACGTGGGAAAGAAGAGTTTTGTGATGGACAT 2061
Query 2077 AGTCCCAAAAACATGGTTGAAGTTGCTGTCATTTCCAAAATCATATCCAATCTTTTCAAA 2136
||||| || || |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2062 AGTCCTAAGAATATGGTTGAAGTTGCTGTCATTTCCGAAATCATATCCAATCTTTTCAAA 2121
Query 2137 GTTTCAAGTCAAAGGAAGCAGAAGATGAGTGTAGGAGTTATTTCACCTTACAAGGGACAA 2196
|||||||||| ||| || |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 2122 GTTTCAAGTCTAAGAAACCAGAAGATGAGTGTTGGAGTGATTTCACCTTACAAGGGACAA 2181
Query 2197 GTGAGAGCAATCCAAGAGAGAGTTGGTGATAAGTACAATTCCTTATCAGTTGATCAGCTT 2256
|||||||| |||||||||||| |||||||||||||| ||||||||||| | |||||||
Sbjct 2182 GTGAGAGCTATCCAAGAGAGAATTGGTGATAAGTACGGTTCCTTATCAG--G-TCAGCTT 2238
Query 2257 TTCACTTTGAATGTTCAATCGGTAGATGGGTTTCAAGGAGGAGAAGTAGACGTTATCATC 2316
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 2239 TTCACTTTGAATGTTCAATCGGTAGATGGGTTTCAAGGAGGAGAAGAAGACATTATCATC 2298
Query 2317 ATCTCTACCGTTAGATGTAACGTTAACGGAAACGTGGGATTTCTCAGTAACCGTCAAAGA 2376
||||||||||||||| |||||||||| ||||||||||||||||| ||||||| |||||||
Sbjct 2299 ATCTCTACCGTTAGAAGTAACGTTAATGGAAACGTGGGATTTCTAAGTAACCATCAAAGA 2358
Query 2377 GCTAACGTGGCATTGACTCGTGCAAGACATTGTTTATGGGTGATTGGTAACGGGACCACT 2436
|| || |||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2359 GCCAATGTGGCACTGACTCGTGCAAGACATTGTTTATGGGTGATTGGTAACGAGACCACT 2418
Query 2437 TTGGCTCTAAGTGGTTCCATTTGGGCAGAACTTATAAGTGAGTCTAGGACACGTGGATGC 2496
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 2419 TTGGCTCTAAGTGGTTCGATTTGGGCAGAACTTATAAGTGAGTCGAGGACACGTGGATGC 2478
Query 2497 TTCTACGATGCTGTAGATGATAAGAATCTAAGAGATGCCATGAGTGATGCTTTGCTTGAT 2556
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2479 TTCTACGATGCTGTTGATGATAAGAATCTAAGAGATGCCATGAGTGATGCTTTGCTTGAT 2538
Query 2557 GATGTGTCTTCGAGTTTTGGATCTTTGTCGATTAGGAATGG 2597
|||||||||||||||||||||||||| || |||||||||||
Sbjct 2539 GATGTGTCTTCGAGTTTTGGATCTTTTTCCATTAGGAATGG 2579
> Ahg891304 jgi|Araly1|891304|Al_scaffold_0007_3290
Length=2457
Score = 1173 bits (635), Expect = 0.0
Identities = 1069/1275 (84%), Gaps = 43/1275 (3%)
Strand=Plus/Plus
Query 1340 ATATGGCTGATTTG-AGCACTCATCTGCCTAAGTCTTTCATTTCATCTAAAGATGTCAAG 1398
|||| | ||||||| | ||||||||| || ||||||||| |||| ||| || | || ||
Sbjct 1184 ATATTGTTGATTTGTA-CACTCATCTTCCCAAGTCTTTCGTTTCGTCTGAACAAGTGGAG 1242
Query 1399 AATTTGATAGCAGCCT-GCCAAGCGCTTCACCGTGTTAGATATTTCTTGCAGGAGAATTC 1457
| | || | |||| || | |||| ||||| || || |||||||||||||| |||||||
Sbjct 1243 AGTATGGTCGCAG-CTCGTCAAGTTCTTCAGCGCGTAAGATATTTCTTGCAAGAGAATTT 1301
Query 1458 TTCTAGAGATGATTTCAAGAAAGGTGGTTTTAGATTCAATTGCTTCAACAAACTCATCAG 1517
||||||| ||||| ||||||| || ||||| | ||| ||||||| | ||| |||||
Sbjct 1302 TTCTAGATATGATCTCAAGAAGGGAGGTTTCAAATTTGATTGCTT-TA-AAA-GAATCAG 1358
Query 1518 TGTTGA-TGCCCTTCAGGCTCT-CTGTCTACTTCCAAAATGTTTTGGGATTTTTG-GTT- 1573
|| ||| || | ||||| |||| | || ||||||| || |||||| ||||| | ||
Sbjct 1359 TGCTGATTG-CGTTCAGACTCTAC-GTTTACTTCCGCAACGTTTTGAGATTTCAGACTTG 1416
Query 1574 TAGCAAATAATGAAGATATTAGAAA-GTTTTGTCTACAAAATGCTGACATAATATTCTGC 1632
| | || || |||||| | ||| ||||||||||| ||||| || ||||| ||||||
Sbjct 1417 TTG-GAA-AACAAAGATA-CAAAAACATTTTGTCTACAGAATGCAGATATAATCTTCTGC 1473
Query 1633 ACAGCCTCAAGTGTTGCTAATATCAATCCGGCGAGGATAGGCTCTG-TGGACCTTCTTGT 1691
||||| ||| ||| ||| |||| ||||||| |||| ||| || | | |||||||||||
Sbjct 1474 ACAGCATCAGGTGCTGCGGATATGAATCCGGTAAGGACAGGATC-GATCGACCTTCTTGT 1532
Query 1692 GGTAGATGAGACAGCTCAGCTTAAGGAATGTGAATCAGTTGCTGCATTGCAACTTCCTGG 1751
||| |||||| | ||||||||||| |||||||||||||||||||| ||||||||| ||||
Sbjct 1533 GGTTGATGAGGCGGCTCAGCTTAAAGAATGTGAATCAGTTGCTGCTTTGCAACTTTCTGG 1592
Query 1752 ACTTTGTCATGCTCTTCTAATAGGAGATGAG-TATCAGTTGCCTGCAATGGTTCATAACG 1810
|||| |||||||| |||| |||||||||||| | ||||||||||||||| | | | |
Sbjct 1593 ACTTCGTCATGCTGTTCTTATAGGAGATGAGCT-TCAGTTGCCTGCAAT-GAT-GTGGC- 1648
Query 1811 AGGA-ATGCGATAAGGCGAAATTCGGAAGAAGCTTGTTTGAGAGATTGGTTTTGATTGGT 1869
| || ||| || ||||| ||||||||||| || ||||| ||||| |||||| || |||||
Sbjct 1649 A-GATATGTGAAAAGGCAAAATTCGGAAGCAGTTTGTTCGAGAGGTTGGTTCTGCTTGGT 1707
Query 1870 CATAGCAAACATTTGCTTAATGTTCAGTATCGAATGCATCCTTCCATTAGTCGTTTCCCT 1929
|| | ||| ||||||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 1708 CACAACAAGCATTTGCTTAATGTTCAATACCGAATGCATCCTTCGATTAGTCGTTTCCCT 1767
Query 1930 AATAAGGAGTTTTATGGTGGGAGAATCACTGATGCTGCAAATGTTCAAGAAAGCATTTA- 1988
||||| ||||| |||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 1768 AATAAAGAGTTCTATGGTGGGAAAATCAAAGATGCTGCGAATGTTCAAGAAAGCATTTAT 1827
Query 1989 CGAGAAGAGGTTTCTTCAAGGAAACATGTTTGGTACTTTCTCATTTATCAATGTGGGACG 2048
| | ||||||||||||||||| |||||||||||| ||||||| ||||||||||| ||||
Sbjct 1828 C-AAAAGAGGTTTCTTCAAGGGAACATGTTTGGTTCTTTCTCTTTTATCAATGTTGGAC- 1885
Query 2049 TGGGA-AAGAAGAGTTTGGTGATGGACATAGTCCCAAAAACATGGTTGAAGTTGCTGTCA 2107
| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1886 TTGGAGAAGAAGAGTTTGGTGATGGACATAGTCCTAAAAACATGGTTGAAGTTGCTGTGA 1945
Query 2108 TTTCCAAAATCATATCCAATCTTTTCAAAGTTTCAAGTCAAAGGAAGCAGAA-GATGAGT 2166
|||| |||||||||| ||||||||||||||||||||| |||| ||| | || ||||||
Sbjct 1946 TTTCTGAAATCATATCAAATCTTTTCAAAGTTTCAAGTGAAAG-AAGAATAAAGATGAGC 2004
Query 2167 GTAGGAGTTATTTCACCTTACAAGGGACAAGTGAGAGCAATCCAAGAGAGAGTTGGTGAT 2226
|| ||||| |||| || ||||| |||||||| |||||||||||||||||| ||
Sbjct 2005 GTTGGAGTGGTTTCTCCATACAAAGGACAAGTCAGAGCAATCCAAGAGAGAACCAAAAAT 2064
Query 2227 AAGTACAATTCCTTATCAGTTGATCAGCTTTTCACTTTGAATGTTCAATCGGTAGATGGG 2286
||||||| || ||||||| ||| |||||||||||||||||||| ||||||||||||
Sbjct 2065 AAGTACAGCTCTTTATCAGGTGA---GCTTTTCACTTTGAATGTTCGGTCGGTAGATGGG 2121
Query 2287 TTTCAAGGAGGAGAAGTAGACGTTATCATCATCTCTACCGTTAGATGTAACGTTAACGGA 2346
|||||||| || |||| ||| |||||||||||||||||||||||| |||||| ||| |||
Sbjct 2122 TTTCAAGGTGGGGAAGAAGATGTTATCATCATCTCTACCGTTAGAAGTAACGGTAATGGA 2181
Query 2347 AACGTGGGATTTCTCAGTAACCGTCAAAGAGCTAACGTGGCA-TTGACTCGTGCAAGACA 2405
|| ||||||||||||| |||||||||||||| || |||||| || ||||| ||||| ||
Sbjct 2182 AAAGTGGGATTTCTCAACAACCGTCAAAGAGCCAATGTGGCACTT-ACTCGAGCAAGGCA 2240
Query 2406 TTGTTTATGGGTGATTGGTAACGGGACCACTTTGGCTCTAAGTGGTTCCATTTGGGC-AG 2464
||||||||||||| ||||||| | ||| |||||||||||||||||||| |||||||| |
Sbjct 2241 TTGTTTATGGGTGGTTGGTAATGAGACAACTTTGGCTCTAAGTGGTTCGATTTGGGCTA- 2299
Query 2465 AACTTATAAGTGAGTCTAGGACACGTGGATGCTTCTACGATGCTG-TAGATGATAAGAAT 2523
|||| |||||||||||||||||||||||||| ||||| |||||| | ||||| ||||||
Sbjct 2300 AACTGATAAGTGAGTCTAGGACACGTGGATGTTTCTATGATGCTACT-GATGAGAAGAAT 2358
Query 2524 CTAAGAGATGCCATGAGTGATGCTTTGCTTGATGATGTGTCTTCGAGTTTTGGATCT-TT 2582
||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| ||
Sbjct 2359 CTAAGAGATTCCATGAGTGATGCTTTGCTTGAGGATGTGTCTTCGAGTTTGGGATCTCTT 2418
Query 2583 GTCGATTAGGAATGG 2597
||||||||||||||
Sbjct 2419 -TCGATTAGGAATGG 2432
> Ahg947346 jgi|Araly1|947346|scaffold_703575.1
Length=2500
Score = 1053 bits (570), Expect = 0.0
Identities = 1024/1236 (83%), Gaps = 59/1236 (5%)
Strand=Plus/Plus
Query 1339 GATATGGCTGATTTGAGCACTCATCTGCCTAAGTCTTTCATTTCATCTAAAGATGTCAAG 1398
||||||| ||||||| |||| ||||||||||||||||| || || ||||| ||||| |||
Sbjct 1212 GATATGGTTGATTTGTGCACCCATCTGCCTAAGTCTTTGATCTCGTCTAATGATGTGAAG 1271
Query 1399 AATTTGATAGCAGCCT-GCCAAGCGCTTCACCGTGTTAGATATTTCTTGCAGGAGAATTC 1457
|| |||||| || || ||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1272 AAAATGATAGAAG-CTCGCCAAGCTCTTCACCGTGTTAGATATTTCTTGCAAGAGAATTC 1330
Query 1458 TTCTAGAG-ATGATTTCAAGAAAGGTGGTTTTAGATTCAATTGCTTCAACAAACTCATCA 1516
||||| | ||||| |||| || | || || ||||| || || ||||||
Sbjct 1331 TTCTA-CGTTTGATTCCAAG-AA-G-GG---AAGTTTCAA-------AA-GAA-TCATCA 1374
Query 1517 GTGTTGA-TGCCCTTCAGGCTCTCTGTCT-ACTTCCAAAATG-TTT-TGG---GATTTTT 1569
||||||| || | |||| ||| | || | | | || ||| | ||| || | ||
Sbjct 1375 GTGTTGATTG-CATTCAAGCTTTAAGTTTGA-TACCGAAACGATTTAAGGTTCCAGAATT 1432
Query 1570 GGTTTAGCAAAT-AATGAAGATATTA-GAAAGTTTTGTCTACAAAATGCTGACATAATAT 1627
|||| | |||| || |||||||||| |||| || ||||||||||| || || ||||| |
Sbjct 1433 -GTTT-GAAAATGAA-GAAGATATTAGGAAA-TTCTGTCTACAAAACGCGGATATAATCT 1488
Query 1628 TCTGCACAGCCTCAAGTGTTGCTA-ATATCAATCCGGCG--AGGATAGGCTCTGTGGACC 1684
|||| ||||||||| ||| ||| | | || ||| || | |||| ||| ||| ||
Sbjct 1489 TCTGTACAGCCTCAGGTGCTGC-AGAAATGAAT--GGTGAAAGGACAGGAAATGTAGAAT 1545
Query 1685 TTCTTGTGGTAGATGAGACAGCTCAGCTTAAGGAATGTGAATCAGTTGCTGCATTGCAAC 1744
|||||||||| || ||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 TTCTTGTGGTTGACGAGGCGGCTCAGCTTAAGGAATGTGAATCAGTTGCTGCATTGCAAC 1605
Query 1745 TTCCTGGACTTTGTCATGCTCTTCTAATAGGAGATGAGTATCAGTTGCCTGCAATGGTTC 1804
||| ||||| |||||||| ||||| |||||||||||| |||||| |||||||||||||
Sbjct 1606 TTCAGGGACTGCGTCATGCTGTTCTACTAGGAGATGAGTTTCAGTTACCTGCAATGGTTC 1665
Query 1805 ATAACGAGGAATGCGATAAGGCGAAATTCGGAAGAAGCTTGTTTGAGAGATTGGTTTTGA 1864
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1666 ATAACGATGAATGCGAAAAGGCGAAATTCGGAAGAAGCTTGTTTGAGAGATTGGTTAC-A 1724
Query 1865 -TTGGTCATAGCAAACATTTGCTTAATGTTCAGTATCGAATGCATCCTTCCATTAGTCGT 1923
|||||||||||||||| |||||| ||||||| ||||||||||| ||||| |||| | ||
Sbjct 1725 CTTGGTCATAGCAAACACTTGCTTGATGTTCAATATCGAATGCACCCTTCGATTATTAGT 1784
Query 1924 TTCCCTAATAAGGAGTTTTATGGTGGGAGAATCACTGATGCTGCAAATGTTCAAGAAAGC 1983
||||||||||| ||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct 1785 TTCCCTAATAAAGAGTTCTATGGTGGGAGAATCAAAGATGCTGCTAATGTTCAAGAAAGC 1844
Query 1984 ATTTACGAGAAGAGGTTTCTTCAAGGAAACATGTTTGG-TACTTTCTCATTTATCAATGT 2042
|||||||| ||| | | ||||||||||||||||||||| | ||| ||| |||||||||||
Sbjct 1845 ATTTACGAAAAGCGATATCTTCAAGGAAACATGTTTGGCTCCTT-CTCGTTTATCAATGT 1903
Query 2043 GGGACGTGGGAAAGAAGAGTTTGGTGATGGACATAGTCCCAAAAACATGGTTGAAGTTGC 2102
|| | ||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1904 AGGTCATGGAAAAGAAGAGTTTGGTGATGGGCATAGTCCCAAGAACATGGTTGAAGTTGC 1963
Query 2103 TGTCATTTCCAAAATCATATCCAATCTTTTCAAAGTTTCAAGTCAAAGGAAGCAG-AAGA 2161
||| ||||| ||||| |||| ||||||||||||||||||||| |||| ||| | || |
Sbjct 1964 TGTGATTTCTGAAATCCTATCAAATCTTTTCAAAGTTTCAAGTGAAAGAAAG-ATTAATA 2022
Query 2162 TGAGTGTAGGAGTTATTTCACCTTACAAGGGACAAGTGAGAGCAATCCAAGAGAGAGTTG 2221
||||||| ||||| ||| ||||||| || ||||||||||||||||||||||| ||| |
Sbjct 2023 TGAGTGTTGGAGTGATTACACCTTATAAAGGACAAGTGAGAGCAATCCAAGACAGAATCA 2082
Query 2222 GT-GATAAGTACAATTCCTTATCAGTTGATCAGCTTTTCACTTTGAATGTTCAATCGGTA 2280
| |||||||||| ||||||||||| ||| ||||||||| |||||||||| ||||||
Sbjct 2083 -TAGATAAGTACAGTTCCTTATCAGGTGA---GCTTTTCACATTGAATGTTCGGTCGGTA 2138
Query 2281 GATGGGTTTCAAGGAGGAGAAGTAGACGTTATCATCATCTCTACCGTTAGATGTAAC-GT 2339
|||||||||||||| || |||| ||| |||||||||||||| ||||||||| ||||| ||
Sbjct 2139 GATGGGTTTCAAGGTGGTGAAGAAGATGTTATCATCATCTCCACCGTTAGAAGTAACTGT 2198
Query 2340 TAAC-GGAAACGTGGGATTTCTCAGTAACCGTCAAAGAGCTAACGTGGCATTGACTCGTG 2398
||| |||| || |||||||||||||||||||||||||| |||||||| | ||||| |
Sbjct 2199 -AACAGGAAG-GTTGGATTTCTCAGTAACCGTCAAAGAGCCAACGTGGCGCTCACTCGAG 2256
Query 2399 CAAGACATTGTTTATGGGTGATTGGTAACGGGACCACTTTGGCTCTAAGTGGTTCCATTT 2458
| ||||| ||||||||||||||||| || | ||| || | |||| |||||||| ||||
Sbjct 2257 CTAGACACTGTTTATGGGTGATTGGAAATGAGACAACACTAGCTCGGAGTGGTTCAATTT 2316
Query 2459 GGGCAGAA-CTTATAAGTGAGTCTAGGACACGTGGATGCTTCTACGATGCTGTAGATGAT 2517
|||| ||| ||| |||| || || | || |||| ||||||||| |||||| |||||||
Sbjct 2317 GGGC-GAAACTTGTAAGGGACTCGAAGAGACGTAAATGCTTCTATGATGCTAAAGATGAT 2375
Query 2518 AAGA-ATCTAAGAGATGCCATGAGTGATGCTTTGCT 2552
|||| || | ||||||||||||| ||||||||||||
Sbjct 2376 AAGAGAT-TGAGAGATGCCATGAATGATGCTTTGCT 2410
Score = 219 bits (118), Expect = 1e-55
Identities = 210/255 (82%), Gaps = 4/255 (2%)
Strand=Plus/Plus
Query 702 TGTTGTCGATATAATACGTTCAGCAAAAC-TGAACTCTTCCCAAGAAGCTGCGATTTTGG 760
|||| | |||||||| |||||| | ||| |||||||||||||| || |||| || |||
Sbjct 689 TGTTTTGGATATAATCCGTTCAAC-GAACTTGAACTCTTCCCAAAAATCTGCAATCTTGA 747
Query 761 GTTTCCTTAAGACAAGGAATTGTAAACACAAGGAGAGTGTGAAACTGATATGGGGACCTC 820
| | |||| |||| || || ||||||| ||| | |||||||||||||||||||||||||
Sbjct 748 GCTGCCTTGAGACTAGAAACAGTAAACATAAGAACAGTGTGAAACTGATATGGGGACCTC 807
Query 821 CTGGTACAGGCAAAACAAAGACGGTCGCGACACTTCTCTCTACTCTTATGCAA-CTAAAG 879
|||| |||||||||||||||| ||| |||| ||||||||| | ||| | ||| ||| |
Sbjct 808 CTGGAACAGGCAAAACAAAGATGGTTTCGACTCTTCTCTCTGCCCTTCT-CAAACTACGG 866
Query 880 TGCAAAACAGTTGTATGTGCTCCTACAAACACAACTATTGTAGCAGTAGCGTCAAGGTTA 939
|||||||||||||| |||||||||||||||||| || |||||| |||| | || ||| ||
Sbjct 867 TGCAAAACAGTTGTGTGTGCTCCTACAAACACAGCTGTTGTAGAAGTAACATCGAGGCTA 926
Query 940 TTATCTTTATCTAAG 954
|| ||||||| |||
Sbjct 927 TTGGCTTTATCGAAG 941
> Ahg355656 jgi|Araly1|355656|fgenesh1_pg.C_scaffold_7002829
Length=2487
Score = 915 bits (495), Expect = 0.0
Identities = 805/950 (85%), Gaps = 40/950 (4%)
Strand=Plus/Plus
Query 1342 ATGGCTGATTTG-AGCACTCATCTGCCTAAGTCTTTCATTTCATCTAAAGATGTCAAGAA 1400
|||| ||||||| | ||| ||||| || ||||||| |||||||||| ||||||| |||||
Sbjct 1285 ATGGTTGATTTGTA-CACACATCTTCCCAAGTCTTACATTTCATCTCAAGATGTGAAGAA 1343
Query 1401 TTTGATAGCAGCCT-GCCAAGCGCTTCACCGTGTTAGATATTTCTTGCAGGAGAATTCTT 1459
|||| || || | ||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct 1344 AATGATTGC-TTCTCGTCAAGCTCTTCAACGTGTCAGATATTTCTTGCAGGAGAATTCTT 1402
Query 1460 CTAGAGATGATTTC-AAGAAAGGTGGTTTTAGATTCAATTGCTTCAACAA-ACTCATCAG 1517
|||||| ||||||| ||| |||| ||| | ||| |||||||||| || |||||||||
Sbjct 1403 CTAGAGTTGATTTCAAAG-AAGGAAATTTCAAATTTGATTGCTTCAA-AAGACTCATCAG 1460
Query 1518 TGTTGA-TGCCCTT-CAGGCTCT-CTGTCTACTTCCAAAATGTTTTGGGATTTTTGG--- 1571
|||||| || |||| | |||||| | || ||||||||||| |||||| || | ||
Sbjct 1461 TGTTGATTG-CCTTGC-GGCTCTAC-GTTTACTTCCAAAACGTTTTGAGA-TACCGGACA 1516
Query 1572 T-TTAGCAAATAATGAAGATATTA-GAAAGTTTTGTCTACAAAATGCTG-ACATAATATT 1628
| || | || || |||||||||| |||| ||||| |||||||| || | | ||||| |
Sbjct 1517 TGTT-G-GAA-AACGAAGATATTAGGAAA-TTTTGCCTACAAAACGC-GCATATAATCCT 1571
Query 1629 CTGCACAGCCTCAAGTGTTGCT-AATATCAATCCGGCGAGGATAGGCTCTGTGGACCTTC 1687
|||||| || || ||| |||| || || ||||||| |||| ||| | | || ||||
Sbjct 1572 CTGCACGGCTTCTGGTGCTGCTGAA-ATGAATCCGGAAAGGACAGGAAATATAGAACTTC 1630
Query 1688 TTGTGGTAGATGAGACAGCTCAGCTTAAGGAATGTGAATCAGTTGCTGCATTGCAACTTC 1747
||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1631 TTGTGGTTGATGAGGCCGCTCAGCTTAAGGAATGTGAATCAGTTGCTGCATTGCAACTTA 1690
Query 1748 CTGGACTTTGTCATGCTC-TTCTAATAGGAGATGAGTATCAGTTGCCTGCAATGGTTCAT 1806
||||| ||| || | || ||||||||||||||| ||| |||||||||||||| |||
Sbjct 1691 AGGGACTGCATCACGC-CATTTTAATAGGAGATGAGTTTCAATTGCCTGCAATGGTACAT 1749
Query 1807 AACGAGGAA-TGCGATAAGGCGAAATTCGGAAGAAGCTTGTTTGAGAGATTGGTTTTGAT 1865
|| ||| | || || ||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1750 AATGAG-ATGTGTGAAAAGGCGAAATTCGGAAGAAGCTTGTTTGAAAGATTGGTTTTGCT 1808
Query 1866 TGGTCATAGCAAACATTTGCTTAATGTTCAGTATCGAATGCATCCTTCCATTAGTCGTTT 1925
|||||||| ||||||||||||| ||||||| ||||||||||||||||| |||||||||||
Sbjct 1809 TGGTCATAACAAACATTTGCTTGATGTTCAATATCGAATGCATCCTTCGATTAGTCGTTT 1868
Query 1926 CCCTAATAAGGAGTTTTATGGTGGGAGAATCACTGATGCTGCAAATGTTCAAGAAAGCAT 1985
||||||||| ||||| |||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1869 CCCTAATAAAGAGTTCTATGGTGGGAGAATCAAAGATGCTGCGAATGTTCAAGAAAGCAT 1928
Query 1986 TTA-CGAGAAGAGGTTTCTTCAAGGAAACATGTTTGGTACTTTCTCATTTATCAATGTGG 2044
|| | | |||||||||||||||||||||||||||||| | ||||| ||||||||||| |
Sbjct 1929 CTATCAA-AAGAGGTTTCTTCAAGGAAACATGTTTGGTTCATTCTCCTTTATCAATGTTG 1987
Query 2045 GACGTGGGAAAGAAGAGTTTGGTGATGGACATAGTCCCAAAAACATGGTTGAAGTTGCTG 2104
||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1988 GACGTGGAAAAGAGGAGTTTGGTGATGGACATAGTCCCAAGAACATGGTTGAAGTTGCTG 2047
Query 2105 TCATTTCCAAAATCATATCCAATCTTTTCAAAGTTTCAAGTCAAAGGAAGCA-GAAGATG 2163
||||||| |||| ||||||||||||||||||||||||||| |||| ||| | |||||||
Sbjct 2048 TCATTTCTGAAATAATATCCAATCTTTTCAAAGTTTCAAGTGAAAG-AAGGATGAAGATG 2106
Query 2164 AGTGTAGGAGTTATTTCACCTTACAAGGGACAAGTGAGAGCAATCCAAGAGAGAGTTGGT 2223
||||| ||||| |||||||||| || ||||||||||||||||||||||||||| | ||
Sbjct 2107 AGTGTTGGAGTGGTTTCACCTTATAAAGGACAAGTGAGAGCAATCCAAGAGAGAATCGGA 2166
Query 2224 GATAAGTACAATTCCTTATCAGTTGATCAGCTTTTCAC-TTTGAATGTTC 2272
|||||||||| ||||||||||| | ||| |||||||| |||||||||||
Sbjct 2167 GATAAGTACAGTTCCTTATCAG--G-TCAACTTTTCACGTTTGAATGTTC 2213
Score = 313 bits (169), Expect = 5e-84
Identities = 241/274 (88%), Gaps = 11/274 (4%)
Strand=Plus/Plus
Query 2351 TGGGATTTCTCAGTAACCGTCAAAGAGCTAACGTGGCATTGACTCGTGCAAGACATTGTT 2410
|||| ||||||||||||||||||||||| ||||||||| ||||||| ||||| |||||||
Sbjct 2217 TGGG-TTTCTCAGTAACCGTCAAAGAGCCAACGTGGCACTGACTCGAGCAAGGCATTGTT 2275
Query 2411 TATGGGTGATTGGTAACGGGACCACTTTGGCTCTAAGTGGTTCCATTTGGGCAGAACTTA 2470
||||||||||||| || | ||||||||| ||| | |||||||| |||||||| || | |
Sbjct 2276 TATGGGTGATTGGAAATGAGACCACTTTAGCTTTGAGTGGTTCGTTTTGGGCAAAAATGA 2335
Query 2471 TAAGTGAGTCTAGGACACGTGGATGCTTCTACGATGCTG-TAGATGATAAGAATCTAAGA 2529
||||||||||||||||||||||||| ||||||||||||| | ||||| ||||||||||||
Sbjct 2336 TAAGTGAGTCTAGGACACGTGGATGTTTCTACGATGCTGCT-GATGAGAAGAATCTAAGA 2394
Query 2530 GATGCCATGAGTGATGCTTTGCTTGATGATGTGTCTTCGAGTTTTGGATCT-TTGTCGAT 2588
|||||||||||||||||||||||||| ||||||||||| |||||||||||| || || ||
Sbjct 2395 GATGCCATGAGTGATGCTTTGCTTGAGGATGTGTCTTCAAGTTTTGGATCTCTT-TCAAT 2453
Query 2589 TAGGA------ATGGGAGAAGAAATGATTGGTAG 2616
|||| ||||||||||||||| |||||||
Sbjct 2454 CAGGAGTGGCTATGGGAGAAGAAATGCTTGGTAG 2487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98653734550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5