BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37170.1
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353659 jgi|Araly1|353659|fgenesh1_pg.C_scaffold_7000832 867 0.0
> Ahg353659 jgi|Araly1|353659|fgenesh1_pg.C_scaffold_7000832
Length=1020
Score = 867 bits (469), Expect = 0.0
Identities = 616/686 (90%), Gaps = 13/686 (2%)
Strand=Plus/Plus
Query 327 GGACACATCTGAAGGATGTG--A-TACACGAAGAAAAAGATGCATTCAGTTCTGCCCATG 383
|||||||||||||||||||| | |||| |||||||||||||||||||| ||||||||||
Sbjct 341 GGACACATCTGAAGGATGTGATATTACAAGAAGAAAAAGATGCATTCAGCTCTGCCCATG 400
Query 384 GCATGGGACTCTACGAATACGTT--GTACGGACGAACAATTCGCTGCTATATTTAACCAG 441
|||| |||||| ||||||| || || ||||||||||||||||| ||| || ||||||
Sbjct 401 ACATGAGACTCTTCGAATACATTGGGT-TGGACGAACAATTCGCTGGTATGTTAAACCAG 459
Query 442 GCAATGTCAGATTCCTCTACCATGATCATGACGAAGATTTTAGAAGTTTACAAAGGATTA 501
||||||||||| || |||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 460 GCAATGTCAGAATCTTCTACCATGATCATGAAGAAGATTTTCGAAGTTTACAAAGGATTC 519
Query 502 AAAGATGTAAATACTTTAGTTGATATTGGAGGAGGACTTGGCACCATTCTAAATCTTGTC 561
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 520 AAAGATGTAAATACTTTAGTTGATATTGGGGGAGGACTTGGCACCATTCTAAATCTTGTC 579
Query 562 ATTTCGTCCAAGTATCCTCAAATTAAGGGTATCAATTTCGATCTAGCCGCAGTTTTAGCC 621
| | |||||||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 580 A---CTTCCAAGTATCCTCAAATTAAGGGTATCAATTTCGATCTAGCCACGGTATTAGCT 636
Query 622 ACTGCTCC-TTCTTATCCCGGAGTTGAGCATGTACCCGGAGATATGTTTATAGACGTTCC 680
| |||||| || |||| | ||||| ||||||||| | ||||||||||||||||| |||||
Sbjct 637 AATGCTCCATT-TTATTCAGGAGTGGAGCATGTATCGGGAGATATGTTTATAGAAGTTCC 695
Query 681 AAAAGGAGATGCAATCTTCATGAGGCGGATATTACGTGACTGGAACGACAAAGATTGTGT 740
||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||
Sbjct 696 AAAAGGAGATGCAATCTTCATGAAATGGATATTACATGACTGGAACGACGAAGATTGTGT 755
Query 741 AAAGATAT-TAACAAATTGTTGGAAGAGTCTTCCGGAAAAGGGAAAAGTTATAATAGTTG 799
|||||| | ||| ||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 756 AAAGAT-TCTAAAAAACTGTTGGAAGAGTCTTCCGGAAAAGGGAAAAGTGATAATAGTTG 814
Query 800 ACATGGTTGCACCATCAGAACCAAAGAGTGACGACATTTTCTCTAAGGTTGTCTTTGGTA 859
| |||||| |||||||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct 815 ATATGGTTACACCATCAGAACCAAAGAGTGACGACCTTTTCTCTAACATCGTCTTTGGTA 874
Query 860 CGGACATGTTGATGTTAACACAATGTTCGTGTGGTAAAGTGAGGTCTTTTGCTCAGTTTG 919
|||||||||| |||| |||||||||||| |||||||||||| ||||||| |||||||||
Sbjct 875 TGGACATGTTGGTGTTGACACAATGTTCGGGTGGTAAAGTGAAGTCTTTTTCTCAGTTTG 934
Query 920 AAGCTTTAGCCTCTGCTTCAGGTTTTCATAAATGTGAAGTAAGTGGTCTTGCTTATACAT 979
||||||||||||||||||| || |||| |||||||||| | |||| ||||||||||||||
Sbjct 935 AAGCTTTAGCCTCTGCTTCGGGGTTTCTTAAATGTGAAATCAGTGCTCTTGCTTATACAT 994
Query 980 ATTCTGTTATCGAATTCCACAAATAG 1005
||| |||||||||| ||||||| |||
Sbjct 995 ATTATGTTATCGAAATCCACAAGTAG 1020
Score = 274 bits (148), Expect = 9e-73
Identities = 177/191 (93%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 139 GGCGTATGGCTCTCGCCTTCCGAGATAGCTTTTGGTCTCCCTACCAAGCCTACCAACCCA 198
||||||||||||||| |||| |||||||||||||||||||||||||| || |||||||||
Sbjct 61 GGCGTATGGCTCTCGTCTTCGGAGATAGCTTTTGGTCTCCCTACCAAACCCACCAACCCA 120
Query 199 GAGGCACCGATGTTGATAGACCGTATGTTACGGTTACTCGTCAGCCACTCGATCTTGAAA 258
||||| || || ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGGCGCCAATTTTGCTAGACCGTATGTTACGGTTACTCGTCAGCCACTCGATCTTGAAA 180
Query 259 TGTCGTTTAGTTGAAACCGGAGAAAACAATCGAACCG-AAAGTACCCAAAGGGTATATGC 317
|||||| |||||||||||||||||||| ||| ||||| |||| |||||||||||||||||
Sbjct 181 TGTCGTATAGTTGAAACCGGAGAAAACGATCTAACCGGAAAG-ACCCAAAGGGTATATGC 239
Query 318 AGCGGAACCGG 328
||| |||||||
Sbjct 240 AGCCGAACCGG 250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37360458660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5