BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37180.1
Length=2511
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493691 jgi|Araly1|493691|fgenesh2_kg.7__3124__AT5G37180.1 3886 0.0
> Ahg493691 jgi|Araly1|493691|fgenesh2_kg.7__3124__AT5G37180.1
Length=2514
Score = 3886 bits (2104), Expect = 0.0
Identities = 2386/2522 (95%), Gaps = 19/2522 (1%)
Strand=Plus/Plus
Query 1 ATGGAAATGACATCTGGATCGTTAGGCAATGGGATCCCAGAAGCGATGGGACAAAACCGC 60
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGGAAATGCCATCTGGATCGTTAGGCAATGGGATCCCAGAAGCGATCGGACAAAACCGT 60
Query 61 GGGAATATTAAACGTTGCCTCGAGAAGTATATTGAGAATGGCAGAAGGGTGATGAAATTG 120
||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 GGGAACATAAAACGTTGCCTCGAGAAGTACATTGAGAATGGCAGAAGGGTGATGAAATTG 120
Query 121 AACGAGTTGATGGATGAAATGGAAATTGTTATCAATGATGTAACA-CAACGAAGGCGAGT 179
||||||||||||||||| ||||| ||||||||||||||||||| | ||||||||||||||
Sbjct 121 AACGAGTTGATGGATGAGATGGAGATTGTTATCAATGATGTAA-AGCAACGAAGGCGAGT 179
Query 180 CATGGAAGGCGATCTTGGCAAGATCTTGTGCTTCACTCA-G--GCAGTGGTAATTCCTCC 236
||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||
Sbjct 180 CATGGAAGGCGATCTAGGCAAGATCTTGTGCTTCACTCAGGAAGCAGTGGTAATTCCTCC 239
Query 237 GAACGTAGCGTTCGCAGTAAGAGGAACCCCGGGAAAT-TGGCAATACGTGAAAGTTAACT 295
|| ||||| || || |||||||||| |||||| ||| ||||||||| |||||||||||
Sbjct 240 AAATGTAGCATTTGCGGTAAGAGGAAACCCGGG-AATATGGCAATACACGAAAGTTAACT 298
Query 296 CTTCCAATCTCTCGGTAGAAGCTCTATCGAGCACGCAATATCTCAAACTTAAAGAGTTTC 355
|||||||||| || || ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 299 CTTCCAATCTTTCCGTGGAAGCTCTATCGAGCACACAATATCTCAAACTCAAAGAGTTTC 358
Query 356 TCTTCGACGAGAATTGGGCAAACGATGAAAATGCATTGGAGGTTGATTTTGGAGCGCTGG 415
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 359 TCTTTGACGAGAATTGGGCAAACGATGAAAATGCATTGGAGGTTGATTTTGGAGCGTTGG 418
Query 416 ATTTCACTCTTCCTTGGCTTTCGTTGTCATCTTCAATAGGAAACGGCCTGAGTTTTGTGT 475
|||||||||||||||||||||| ||| ||||||| |||||||||||| | ||||||||||
Sbjct 419 ATTTCACTCTTCCTTGGCTTTCATTGCCATCTTCCATAGGAAACGGCGTCAGTTTTGTGT 478
Query 476 CCTCGAAGCTCGGAGGGCGTTTAAACGATAACCCGCAATCTCTCGTGGACTACTTGTTGT 535
|||| ||||||||| | |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 479 CCTCAAAGCTCGGAAGCCGTTTAAACGATAACCCGCAGTCTCTCGTGGACTACTTGTTGT 538
Query 536 CACTTGAGCATCAAGGAGAGAAGCTTATGATGAATGAGACTCTTAACACGGCTAGAAAGC 595
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 539 CACTTGAGCATCAAGGAGAGAAGCTTATGATGAATGAGACTCTAAACACGGCTAGAAAGC 598
Query 596 TTGAGATGAGTTTGATTTTGGCAGATGTTTTCCTATCGGAGCTGCCTAAGGACACACCTT 655
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 599 TTGAGATGAGTTTGATTTTGGCTGATGTTTTCCTATCGGAGCTACCTAAGGACACACCTT 658
Query 656 TCCAAGCCTTTGAACTCAGGTTTAAGGAATGTGGTTTTGAGAAAGGATGGGGAGAAAGCG 715
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 659 TCCAAGCCTTTGAACTCAGGTTTAAGGAATGGGGTTTTGAGAAAGGATGGGGAGAAAGCG 718
Query 716 CAGGGAGAGTAAAGGAGACAATGAGAATCTTGTCGGAGATTCTTCAAGCCCCTGATCCTC 775
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 719 CAGGGAGAGTTAAGGAGACAATGAGAATTTTGTCGGAGATTCTTCAAGCCCCTGATCCTC 778
Query 776 AAAACATTGATCGATTCTTCGCAAGGGTTCCTAGAATCTTTAACGTTGTCATCTTCTCGG 835
| |||||||||||||||||||| ||| |||||||||| ||||||||||| ||||||||||
Sbjct 779 ACAACATTGATCGATTCTTCGCTAGGATTCCTAGAATATTTAACGTTGTTATCTTCTCGG 838
Query 836 TTCACGGCTACTTTGGTCAAACCGATGTTCTAGGTTTGCCTGATACTGGCGGTCAAGTCG 895
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 839 TTCACGGCTACTTTGGCCAAACCGATGTTCTTGGTTTGCCTGATACTGGCGGTCAAGTCG 898
Query 896 TTTACATTCTTGACCAAGTTAAAGCCCTTGAAGATGAATTGCTTCAAAGAATTAACTCTC 955
||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 899 TTTACATTCTTGATCAAGTTAAGGCCCTTGAAGATGAATTGCTTCATAGAATCAACTCTC 958
Query 956 AAGGCCTTAATTTCAAACCTCAGATTCTTGTTGTAACACGATTAATCCCAGACGCTaaaa 1015
||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 959 AAGGCCTTAATTTCAAACCTCAGATTCTTGTTGTAACGCGATTAATCCCTGATGCTAAAA 1018
Query 1016 aaaCTAAATGCAACCAAGAGTTGGAACCTATTTTCGGAACGAAATATTCGAATATTCTTC 1075
| ||||||||||||||||| ||||||||||||||||| || ||| |||| ||||||||||
Sbjct 1019 ACACTAAATGCAACCAAGAATTGGAACCTATTTTCGGTACCAAACATTCAAATATTCTTC 1078
Query 1076 GAATTCCATTTGTAACAGAAAATGGGATTTTACGTCGTTGGGTTTCCCGCTTTGATATCT 1135
||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |
Sbjct 1079 GAATTCCATTTGTAACAGAGAATGGAATTTTACGACGTTGGGTTTCCCGCTTTGATATAT 1138
Query 1136 A-CCCATACCTAGAAAGATTCACTAAGGATGCAACAACAAAGATATTGGATATTTTGGAA 1194
| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1139 ATCCC-TACCTAGAAAGATTCACTAAGGATGCAACAACAAAAATATTGGATATTTTGGAA 1197
Query 1195 GGAAAACCTGACCTAATAATCGGGAACTATACGGATGGAAACTTGGTGGCATCACTCATG 1254
||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||
Sbjct 1198 GGAAAACCTGACCTAATCATCGGAAATTATACGGATGGAAACTTAGTGGCATCACTCATG 1257
Query 1255 GCTAATAAGCTTGGAATTACTCAGGCAACTATTGCACATGCCTTGGAGAAGACTAAATAT 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GCTAATAAGCTTGGAATTACTCAGGCAACTATTGCACATGCCTTGGAGAAGACTAAATAT 1317
Query 1315 GAAGATTCAGATATCAAGTGGAAAGAGTTTGATCCTAAATATCATTTCTCATCTCAATTT 1374
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GAAGACTCAGATATCAAATGGAAAGAGTTTGATCCTAAATATCATTTCTCATCTCAATTT 1377
Query 1375 ACGGCAGACTTAATCTCTATGAACTCTGCCGATTTCATCATAGCTAGCACTTATCAAGAA 1434
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1378 ACGGCAGACTTAATCTCTATGAACTCTGCTGATTTCATCATAGCAAGCACTTATCAAGAG 1437
Query 1435 ATTGCTGGAAGCAAAGAGAGGGCTGG-ACAATACGAGAGCCACATGAGCTTCACAGTCCC 1493
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||
Sbjct 1438 ATTGCTGGAAGCAAAGAGAGGG-TGGGACAATACGAGAGCCACATGAGCTTCACACTCCC 1496
Query 1494 GGGGCTATACAGAGTTGTCTCCGGCATTAATGTCTTCGATCCGAGGTTCAACATCGCAGC 1553
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1497 GGGCCTATACAGAGTTGTCTCCGGCATTAATGTCTTTGATCCGAGGTTCAACATCGCAGC 1556
Query 1554 TCCTGGCGCGGATGACT-CTATCTATTTCCCTTTTACCGCACAAGACCGGAGATTCACCA 1612
||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1557 TCCTGGCGCGGATGA-TACTATCTACTTCCCTTTTACCGCACAAGACCGGAGATTCACCA 1615
Query 1613 AGTTCTA-CACTTCCATTGATGAACTCTTGTATAGCCAAAGTGAGAATGACGAACACATC 1671
|||| || | |||||||||| |||||||||| |||||||| ||||||||| ||||||||
Sbjct 1616 AGTTTTATC-CTTCCATTGACGAACTCTTGTTTAGCCAAAATGAGAATGATGAACACATT 1674
Query 1672 GGTTATTTAGTGGACAAGAAGAAACCGATCATTTTCTCAATGGCAAGGCTTGATGTTGTC 1731
|||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1675 GGTTATTTGGTGGATAAGAAGAAACCGATCATCTTCTCAATGGCAAGGCTTGATGTTGT- 1733
Query 1732 AAA-AACCTAACCGGATTAACTGAGTGGTATGCCAAGAACAAGAGGCTACGAGACTTGGT 1790
||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 AAAGAACTTAACGGGATTAACTGAGTGGTATGCCAAGAACAAGAGGCTACGAGACTTGGT 1793
Query 1791 GAACCTCGTGATCGTAGGAGGATTCTTCGACGCTTCTAAGTCTAAAGACAGGGAAGAGAT 1850
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1794 GAACCTCGTGATCGTAGGAGGATTCTTCGACCCTTCCAAGTCTAAAGACAGGGAAGAGAT 1853
Query 1851 CTCAGAGATCAAGAAGATGCATTCTCTGATTGAGAAATACCAACTCAAGGGTCAATTTAG 1910
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1854 CTCAGAGATCAAGAAGATGCATTCTCTGATTGAAAAATACCAACTCAAGGGTCAATTTAG 1913
Query 1911 ATGGATCACAGCTCAAACAGATCGAACAAGAAACGGTGAACTTTACCGATCTATCGCGGA 1970
|||||| ||||||||||||||||||| |||||||||||||||||||||| ||| || ||
Sbjct 1914 ATGGATTGCAGCTCAAACAGATCGAACCAGAAACGGTGAACTTTACCGATGTATTGCAGA 1973
Query 1971 TACAAGAGGTGCTTTTGTGCAGCCTGCACATTATGAAGCCTTTGGTCTTACTGTCATTGA 2030
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1974 TACAAGAGGTGCTTTTGTGCAGCCTGCACATTATGAAGCCTTTGGACTTACTGTCATTGA 2033
Query 2031 AGCCATGAGCTGTGGTTTGGTCACATTCGCCACGAACCAAGGCGGTCCTGCTGAGATTAT 2090
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2034 AGCAATGAGCTGTGGTTTGGTCACATTCGCCACGAACCAAGGCGGTCCTGCGGAGATTAT 2093
Query 2091 TGTGGATGGTGTCTCTGGTTTCCACATTGACCCGAGCAATGGAGAAGAATCAAGTGATAA 2150
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2094 TGTGGATGGTGTCTCTGGATTCCACATTGACCCGAGCAATGGAGAAGAATCAAGTGATAA 2153
Query 2151 GATTGCGGATTTCTTTGAGAAATCCGGTATGGATCCTGATTATTGGAATATGTTTTCGAA 2210
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 2154 GATTGCGGATTTCTTTGAGAAATCCGGTACCGATCTTGATTATTGGAATATGTTTTCGAC 2213
Query 2211 TGAAGGGCTACAACGCATAAACGAATGCTATACATGGAAGATATATGCAAACAAAGTGAT 2270
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2214 TGAAGGGCTGCAACGCATAAACGAATGCTATACATGGAAGATATATGCAAACAAAGTGAT 2273
Query 2271 AAACATGGGGAGTACATATAGCTACTGGAGACATTTGAACAAAGATCAGAAACTGGCCAA 2330
||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||
Sbjct 2274 AAACATGGGGAGTACATATAGCTACTGGAGATATTTGAACAAAGATCAGAAACTTGC-AA 2332
Query 2331 A-CAAAGATATATCCATTCCTTCTACAATCTTCAATACCGAAATTTGGTGAAAACTATAC 2389
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2333 AGCAAAGATATATCCATTCCTTCTACAATCTTCAATACCGAAATTTGGTGAAAAATATAC 2392
Query 2390 CCATATTGAGTGATATTCCTGAGCCTCCTCCTCTTCCTCCAAAGCCTTTGGTGAAACCAT 2449
| ||||||| |||||||||| |||| || |||| ||||||||||||||||||||||||||
Sbjct 2393 CAATATTGAATGATATTCCTCAGCCACCACCTCCTCCTCCAAAGCCTTTGGTGAAACCAT 2452
Query 2450 CAGCATCAAAAGGCTCGAAGCGAACACAGCCGCGATTGAGTTTCAGGTTGTTTGGTGCTT 2509
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 2453 CAGCATCAAAAGGCTCGAGGCGAACACAGTCGCGATTGAGTTTCAGGTTGTTTGGTGCTT 2512
Query 2510 AA 2511
||
Sbjct 2513 AA 2514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94654258825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5