BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G37240.1 Length=477 Score E Sequences producing significant alignments: (Bits) Value Ahg925001 jgi|Araly1|925001|scaffold_200562.1 84.2 8e-16 > Ahg925001 jgi|Araly1|925001|scaffold_200562.1 Length=964 Score = 84.2 bits (45), Expect = 8e-16 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165 TAATGAGAATGGATTCTTATACTATAGAGACAACTCACTGGGGAGACGATTGGGTAGCCA 224 ||| |||||||||||||||| || |||| ||| ||| |||||||||||||||||||||| Sbjct 88 TAAGGAGAATGGATTCTTATGCTGCAGAGGCAAATCATTGGGGAGACGATTGGGTAGCCA 147 Query 225 AGAGAA 230 |||||| Sbjct 148 AGAGAA 153 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17284481817 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5