BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G37240.1

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg925001 jgi|Araly1|925001|scaffold_200562.1                       84.2    8e-16


> Ahg925001 jgi|Araly1|925001|scaffold_200562.1
Length=964

 Score = 84.2 bits (45),  Expect = 8e-16
 Identities = 59/66 (89%), Gaps = 0/66 (0%)
 Strand=Plus/Plus

Query  165  TAATGAGAATGGATTCTTATACTATAGAGACAACTCACTGGGGAGACGATTGGGTAGCCA  224
            ||| |||||||||||||||| ||  |||| ||| ||| ||||||||||||||||||||||
Sbjct  88   TAAGGAGAATGGATTCTTATGCTGCAGAGGCAAATCATTGGGGAGACGATTGGGTAGCCA  147

Query  225  AGAGAA  230
            ||||||
Sbjct  148  AGAGAA  153



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17284481817


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5