BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37250.1
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947329 jgi|Araly1|947329|scaffold_703558.1 704 0.0
> Ahg947329 jgi|Araly1|947329|scaffold_703558.1
Length=665
Score = 704 bits (381), Expect = 0.0
Identities = 519/584 (89%), Gaps = 16/584 (3%)
Strand=Plus/Plus
Query 5 TCCTACCACAAGATCAAGGGTTTAG-AAACACCGTGTTCGTCAATCTACA-AGATGTGGT 62
||||||||||| ||| ||||||| | ||||| ||||||||| ||| || | |||||||
Sbjct 64 TCCTACCACAACATCTAGGGTTT-GAAAACAAAGTGTTCGTCTGTCTGCACA-ATGTGGT 121
Query 63 CAACGAGTTAGCTGAAGATCAAAACGGTGTCGTAATGTGTTTGGGAACGTTCGCGGCTCC 122
|||||||||||||||||||||||||||| |||||| || ||||||||||||| ||| |||
Sbjct 122 CAACGAGTTAGCTGAAGATCAAAACGGTATCGTAACGTATTTGGGAACGTTCTCGGATCC 181
Query 123 ACTTATGACTAAAATCGAATTGAAACCATCATGTCTCAGTTCACATCACATCTATCAAGA 182
||||||| ||| ||||||| |||||||||||||| || |||||||| |||||| |||| |
Sbjct 182 ACTTATGTCTAGAATCGAACTGAAACCATCATGTTTCTGTTCACATTACATCTCTCAACA 241
Query 183 CCTTGACGAGTTCATCACACATACTGAGTTTTGTCGATTGTTGAGCGAAAGGATCGTTTT 242
|||||||| |||||||||| || || ||||||||||| ||||||| ||||| |||| |||
Sbjct 242 CCTTGACGTGTTCATCACAAATCCTCAGTTTTGTCGAATGTTGAGTGAAAGAATCGCTTT 301
Query 243 GGATTGTGCTCATATTCCCCAACCTTTTAGTGTGTCCTTATACGTGGAAGTGACAAGAGA 302
||||||||||| | |||| ||||||||||||||| |||| |||||| |||||| ||||||
Sbjct 302 GGATTGTGCTCCTCTTCCTCAACCTTTTAGTGTGACCTTTTACGTGAAAGTGATAAGAGA 361
Query 303 TGTT--A-T---GTT-CTCGTCTATTGCTGTTAGGTCGACAGATACGTTTCAAAGATTGC 355
|||| | | ||| | |||||||||||||| |||||| ||||| ||||||||||||||
Sbjct 362 TGTTCGAATTATGTTAC-CGTCTATTGCTGTTCGGTCGAAAGATATGTTTCAAAGATTGC 420
Query 356 TTGAGGAACAAACAATGGAATTGACTGATTTGGGAGATGAAGAAGAAACCACTTGTTCGA 415
|||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 421 TTGAGGAACAAACAGTGGAATTGACTGGTTTGGGAGATGAAGAAGAAACGACTTGTTCGA 480
Query 416 TTTGTTTGGAGGACTTTTCGGAGAGTC-ATGATGATAACATCATTCTGTTACCTGACTGT 474
||||| ||||||||||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 481 TTTGTATGGAGGACTTTTCGGAGAGTCGA-GATGATAACATCATTCTGTTGCCTGACTGT 539
Query 475 T-TCCATTTGTTCCATCAAAATTGTATCTTTGAGTGGCTTAAGCGTCAGAGGTCGTGTCC 533
| || ||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||
Sbjct 540 TATC-ATTTGTTCCATCAAAGTTGTATCTTTGAGTGGTTTAAGCGACAGAGGTCGTGTCC 598
Query 534 TTTGTGTCGACGAGTACCGTACGAGGAAGATCTTGAAACAGAGT 577
||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 599 ATTGTGTCGACGAGTACCCTACGAGGAAGATCATGAAACAGAGT 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21176351895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5