BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G37250.1 Length=579 Score E Sequences producing significant alignments: (Bits) Value Ahg947329 jgi|Araly1|947329|scaffold_703558.1 704 0.0 > Ahg947329 jgi|Araly1|947329|scaffold_703558.1 Length=665 Score = 704 bits (381), Expect = 0.0 Identities = 519/584 (89%), Gaps = 16/584 (3%) Strand=Plus/Plus Query 5 TCCTACCACAAGATCAAGGGTTTAG-AAACACCGTGTTCGTCAATCTACA-AGATGTGGT 62 ||||||||||| ||| ||||||| | ||||| ||||||||| ||| || | ||||||| Sbjct 64 TCCTACCACAACATCTAGGGTTT-GAAAACAAAGTGTTCGTCTGTCTGCACA-ATGTGGT 121 Query 63 CAACGAGTTAGCTGAAGATCAAAACGGTGTCGTAATGTGTTTGGGAACGTTCGCGGCTCC 122 |||||||||||||||||||||||||||| |||||| || ||||||||||||| ||| ||| Sbjct 122 CAACGAGTTAGCTGAAGATCAAAACGGTATCGTAACGTATTTGGGAACGTTCTCGGATCC 181 Query 123 ACTTATGACTAAAATCGAATTGAAACCATCATGTCTCAGTTCACATCACATCTATCAAGA 182 ||||||| ||| ||||||| |||||||||||||| || |||||||| |||||| |||| | Sbjct 182 ACTTATGTCTAGAATCGAACTGAAACCATCATGTTTCTGTTCACATTACATCTCTCAACA 241 Query 183 CCTTGACGAGTTCATCACACATACTGAGTTTTGTCGATTGTTGAGCGAAAGGATCGTTTT 242 |||||||| |||||||||| || || ||||||||||| ||||||| ||||| |||| ||| Sbjct 242 CCTTGACGTGTTCATCACAAATCCTCAGTTTTGTCGAATGTTGAGTGAAAGAATCGCTTT 301 Query 243 GGATTGTGCTCATATTCCCCAACCTTTTAGTGTGTCCTTATACGTGGAAGTGACAAGAGA 302 ||||||||||| | |||| ||||||||||||||| |||| |||||| |||||| |||||| Sbjct 302 GGATTGTGCTCCTCTTCCTCAACCTTTTAGTGTGACCTTTTACGTGAAAGTGATAAGAGA 361 Query 303 TGTT--A-T---GTT-CTCGTCTATTGCTGTTAGGTCGACAGATACGTTTCAAAGATTGC 355 |||| | | ||| | |||||||||||||| |||||| ||||| |||||||||||||| Sbjct 362 TGTTCGAATTATGTTAC-CGTCTATTGCTGTTCGGTCGAAAGATATGTTTCAAAGATTGC 420 Query 356 TTGAGGAACAAACAATGGAATTGACTGATTTGGGAGATGAAGAAGAAACCACTTGTTCGA 415 |||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 421 TTGAGGAACAAACAGTGGAATTGACTGGTTTGGGAGATGAAGAAGAAACGACTTGTTCGA 480 Query 416 TTTGTTTGGAGGACTTTTCGGAGAGTC-ATGATGATAACATCATTCTGTTACCTGACTGT 474 ||||| ||||||||||||||||||||| | |||||||||||||||||||| ||||||||| Sbjct 481 TTTGTATGGAGGACTTTTCGGAGAGTCGA-GATGATAACATCATTCTGTTGCCTGACTGT 539 Query 475 T-TCCATTTGTTCCATCAAAATTGTATCTTTGAGTGGCTTAAGCGTCAGAGGTCGTGTCC 533 | || ||||||||||||||| |||||||||||||||| ||||||| |||||||||||||| Sbjct 540 TATC-ATTTGTTCCATCAAAGTTGTATCTTTGAGTGGTTTAAGCGACAGAGGTCGTGTCC 598 Query 534 TTTGTGTCGACGAGTACCGTACGAGGAAGATCTTGAAACAGAGT 577 ||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 599 ATTGTGTCGACGAGTACCCTACGAGGAAGATCATGAAACAGAGT 642 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21176351895 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5