BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37280.1
Length=651
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947330 jgi|Araly1|947330|scaffold_703559.1 806 0.0
> Ahg947330 jgi|Araly1|947330|scaffold_703559.1
Length=703
Score = 806 bits (436), Expect = 0.0
Identities = 591/664 (89%), Gaps = 17/664 (3%)
Strand=Plus/Plus
Query 1 ATGGAAACCGAAACTTTGAGACTACAAGTGGCTACGAGGATGTCGAAGCTACCTTCGAAT 60
||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||
Sbjct 24 ATGGAAACCGAAACTTTGAGAATACAAGTGGCTACGAGGATGTCGAACCTACCTCCGAAT 83
Query 61 CTAGGGTTCACAAGTGCTGTCCA-AATCGAACTACACGAAGTAATCCATGAGATGCTCGA 119
||||||||||| ||||| || || |||| ||||||||||||| ||| | ||| |||||||
Sbjct 84 CTAGGGTTCACGAGTGCAGT-CATAATCAAACTACACGAAGTGATCGAAGAGTTGCTCGA 142
Query 120 AGATGTTACTGGAACAA--CAC----C--CGT-GGTGGCATCACTGTCGCCAATCTCTCA 170
||||||||||||||||| ||| | ||| |||||||||||||| ||||||||| |
Sbjct 143 AGATGTTACTGGAACAACGCACGTGGCATCGTATGTGGCATCACTGTCTCCAATCTCT-A 201
Query 171 -TGTTCTCCTGAAGCCACGTAGCTTCCTACCAGAACAGCTCTCCCGTCTCCTTCGTCGTC 229
||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||
Sbjct 202 GTGTTCTCCTGAAGCCACGTAGCTTCTTACCAGAAAAGCTCTCTCGTCTCCTTCGTCGTC 261
Query 230 AACTTCACCGTGATACTTCTATTTGTGAATCTTTGGCTGAGAAAATCT-CTTCTCT-TCG 287
||||| ||||||| ||| || ||||||||| ||||||||||||||||| ||| | | |||
Sbjct 262 AACTTAACCGTGAGACTCCTTTTTGTGAATTTTTGGCTGAGAAAATCTCCTT-T-TGTCG 319
Query 288 ATTTTCGCGTGCTAATTACACTCTCTATCAAAGACCTTTTCTCATGACGGTGAAAGTGAG 347
||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| |||||
Sbjct 320 GTTTTCACGTGCTAATTACACTCTTTATCAAAGACCTTTTCTCATGTCGGTGAACGTGAG 379
Query 348 AGTCATCAAAGAGGTTCGGTTTATCGTATCCCCTGTTTCTGCTCCGTCGAGTGGTGCTCC 407
|||| ||||||||||||||||| | | ||| ||||||||||||||| |||| |||||||
Sbjct 380 AGTCGTCAAAGAGGTTCGGTTTGTTTTGTCCTCTGTTTCTGCTCCGTTGAGTTGTGCTCC 439
Query 408 GGTGGATGTGTTTCAGAGATTGCTTGAGGAACAAACTGTGGAACCGTCCATGGATTCCGA 467
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||
Sbjct 440 CGTGGATGTGTTTCAGAGATTGCTTGAGGAACAAACTGTGGAACCGGCCAGGGATTTGGA 499
Query 468 TGAGTCTTGTTCAATCTGTTTTGAGAAGCTGTCTGATTCGTTATCGGAGACTTATCATAA 527
|||||| ||||||||||||||||||||| ||||||| |||| ||||| || | |||||||
Sbjct 500 TGAGTCGTGTTCAATCTGTTTTGAGAAGTTGTCTGAATCGTCATCGGGGAGTCATCATAA 559
Query 528 CAGCATCATTCAGATGCCCAAGTGTTTGCATTCGTTTCATCAAAAATGTATTTTTAAGTG 587
|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 560 CAGCATCATTCAGATGCCTAAGTGTTTGCATTCGTTTCATCAAAACTGTATCTTTGAGTG 619
Query 588 GATTGGTCGTCAAAATTCGTGTCCATTGTGTAGGAGAGTTCCGTTCGAAGAGGATGAAGA 647
| ||| |||||| ||||||||||| |||||| | ||||||||||||||||||||| ||||
Sbjct 620 GCTTGCTCGTCACAATTCGTGTCCCTTGTGTCGCAGAGTTCCGTTCGAAGAGGATCAAGA 679
Query 648 TTAG 651
||||
Sbjct 680 TTAG 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23864946042
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5