BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37290.1
Length=940
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947326 jgi|Araly1|947326|scaffold_703555.1 907 0.0
> Ahg947326 jgi|Araly1|947326|scaffold_703555.1
Length=583
Score = 907 bits (491), Expect = 0.0
Identities = 545/572 (95%), Gaps = 0/572 (0%)
Strand=Plus/Plus
Query 142 AGTGAGAGAATGTTTACAAATAATCAAAGACAAGAAGAACGTACTGGAAAACATGGAACA 201
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 AGTCAGAAAATGTTTACAAATAATCAAAGACAAGAAGAACGTACTGGAAAACATGGAACA 71
Query 202 CCAAGGCTTCAATATCTTCAGGAGCTTGTGAGTCAGTTTCAGAATGCAACTGATGAAGAA 261
||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 72 CCAAGACTTCAATATCTTCAGGAGCTAGTGAGTCAGTTTCAAAATGCAACTGATGAAGAA 131
Query 262 ACAAAGGAGAGAATTGTAGCAAACTTGGCGAATTTTGCATATGACCCTTACAACTACACT 321
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||
Sbjct 132 ACAAAGGAGAGAATTGTAGCAAACTTGGCGAATTTTGCGTATGACCCTTATAACTACGCT 191
Query 322 ATTTTACGTCAGCTAAATGTCTTGGAACTATTCGTAGACTGTATAACAGAGCCAAATGAG 381
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 ATTTTACGGCAGCTAAATGTCTTGGAACTATTCGTAGACTGTATAACAGAGCCAAATGAG 251
Query 382 AAGCTTGTAGAATTTGGGATAGGAGGAATATGCAACGCTTGTGCCGAGCCAAAAAACGTT 441
|||||||| |||||||||||||||||| | |||||||| ||||| ||||||||||| |||
Sbjct 252 AAGCTTGTGGAATTTGGGATAGGAGGATTGTGCAACGCCTGTGCTGAGCCAAAAAATGTT 311
Query 442 GCTACCATTGTCGAGGCTGATGGAATTCCTCTGATAATCAAATCCTTATCAAGCCCTGTC 501
|||||||||||||||| ||||||||||||||| |||||||||| |||||||| |||||
Sbjct 312 GCTACCATTGTCGAGGTTGATGGAATTCCTCTTATAATCAAATGTTTATCAAGTCCTGTA 371
Query 502 CGGAACACTGTGAACTACGCGCTTGGGGCTTTGTATTACATGTGTGACTATAACAGAGCA 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 CGGAACACTGTGAACTACGCGCTTGGGGCTTTGTATTACATGTGTGACTATAACAGAGCA 431
Query 562 ACGAGAGAGGAGATTTTGAGACCAGAAGTGGTGGATCTCATCGAGAGGTACGCAGCGGCT 621
|| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 432 ACAAGAGAGGAGATTTTGAGAGCAGAAGTGGTGGATCTCATAGAGAGGTACGCAGCGGCT 491
Query 622 GAATCTGTCAGTGTAAGCTTTAGTAACTTGGCTAAGGCGTTTCTTGACAAGCATGTTCAT 681
||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 492 GAATCAGTCAGTGTAAGCTTTTGTAACTTGGCTAAGGCGTTTCTTGATAAGCATGTTCAT 551
Query 682 GCAAACACATGAGATTCTTGAATTTTATCTTC 713
||||||||||||||||||||||||||||||||
Sbjct 552 GCAAACACATGAGATTCTTGAATTTTATCTTC 583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34882469055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5