BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37310.1
Length=2143
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947354 jgi|Araly1|947354|scaffold_703583.1 2981 0.0
Ahg935928 jgi|Araly1|935928|scaffold_500119.1 867 0.0
Ahg911263 jgi|Araly1|911263|Al_scaffold_0001_1517 754 0.0
> Ahg947354 jgi|Araly1|947354|scaffold_703583.1
Length=1826
Score = 2981 bits (1614), Expect = 0.0
Identities = 1756/1826 (96%), Gaps = 3/1826 (0%)
Strand=Plus/Plus
Query 96 tctttctctctAATTTCTAATGGTACTTCTT-CCTTCGATGACGTCGCTTCTTCTGGTGT 154
|||||||||||||| || |||||||| | || | ||||||||||||||||||||| ||||
Sbjct 2 TCTTTCTCTCTAATCTCAAATGGTAC-TATTGCATTCGATGACGTCGCTTCTTCTAGTGT 60
Query 155 TCCTCTTCCTCTACGGCGTTTCTCCGGTTATCTCCGACGGCTCCGATCACCGTTACAAGG 214
|| ||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 61 TCTTCTTCCTCTCCGGCGTTTCTCCGGTTATCTCTGACGGTTCCGATCACCGTTACAAGG 120
Query 215 TCGGTGATGATGTTCCTCTTTACGCTAACAAAGTCGGACCGTTTCATAATCCCAGTGAAA 274
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 TCGGTGATGATGTTCCTCTTTACGCTAACAAAGTCGGTCCGTTTCATAATCCCAGTGAAA 180
Query 275 CATATCGATACTTTGATCTTCCGTTCTGTTCATCAGCTCCTGTTAAGGAGAAGAAGGAGG 334
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 CATATAGATACTTTGATCTTCCGTTCTGTTCATCAGCTCCTGTTAAGGAGAAGAAGGAAG 240
Query 335 CTCTAGGGGAAGTTCTTAATGGAGATCGATTAGTCAGTGCACCTTACAAACTTGAGTTTT 394
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 241 CTCTAGGGGAAGTTCTTAATGGAGATCGGTTAGTCAGTGCACCGTACAAACTTGAGTTTT 300
Query 395 TGGGTGAGAAGAACTCTGAAGTTGCATGTAGAAAGAGGTTGAGTAGAGAAGACGTTGCTA 454
||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 301 TGGGTGAGAAGAATTCTGAAGTTGCATGTAGGAAGAGGTTGAGTAGAGAAGATGTTGCAA 360
Query 455 AGTTTCGTGATGTGATTGCGAAAGATTATTACTTTCAGATGTATTATGATGACTTGCCCA 514
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 361 AGTTTCGTGATGTGATTGCGAAAGACTATTACTTTCAGATGTATTATGATGACTTGCCCA 420
Query 515 TTTGGGGATTCCTTGGAAAAGTTGTCAAGGAGGGAAAGACTGACCCATCTGAGTATAAAT 574
| ||||||||||| || || |||||||| |||||||| ||||| ||||| ||||||||||
Sbjct 421 TCTGGGGATTCCTGGGGAAGGTTGTCAAAGAGGGAAAAACTGATCCATCCGAGTATAAAT 480
Query 575 ATTATCTCTTCAATCATCTGCAGTTTGAGATTTTCTATAATAAGGACCGTGTTATCGAAA 634
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 481 ATTATCTCTTCAATCATCTACAGTTTGAGATTTTCTATAATAAGGACCGTGTTATTGAAA 540
Query 635 TTATCGTGAGGACAGACCAGAATTTCCTTGTGGACTTGACTGAGGACAAGGAAGTCCAAG 694
|||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 541 TTATTGTGAGAACAGACCAGAATTTCCTCGTGGACTTGACTGAGGACAAGGAAGTCCAAG 600
Query 695 TGGATTTCACATACACAGTTCGATGGAAGGAAACTGAAATTCCATTCGAGAAGAGGATGG 754
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 601 TGGATTTCACATACACAGTTCGATGGAAGGAAACCGAAATCCCATTCGAGAAGAGGATGG 660
Query 755 AGAAATACTCACTGGCTTCATCAATGCCACATCACTTGGAAATCCACTGGTTCTCCATCA 814
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGAAATACTCACTGGCTTCCTCAATGCCACATCACTTGGAAATCCACTGGTTCTCCATCA 720
Query 815 TTAATTCATGTGTCACAGTTCTTCTCTTGACTGGTTTCCTTGCGACGATTCTCATGCGAG 874
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 721 TTAACTCATGTGTCACAGTTCTTCTCTTGACTGGTTTCCTTGCGACGATTCTTATGCGAG 780
Query 875 TCTTGAAGAATGATTTTGTCAAGTATGCACATGATGAAGAGGCAGTTGATGACCAAGAAG 934
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 781 TCTTGAAGAATGATTTTGTCAAGTATGCACATGATGAAGAGGCAGTCGATGACCAAGAAG 840
Query 935 AGACTGGGTGGAAATTGATCCATGGTGATGTATTTAGGTTCCCCAAACACAAATCCCTGC 994
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 841 AGACTGGGTGGAAACTGATCCATGGTGATGTATTTAGGTTCCCCAAACACAAATCCCTAC 900
Query 995 TGGCTGCAGCCCTTGGTTCTGGCACACAATTGTTTACACTAGCTGTTTTCATCTTCATGC 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TGGCTGCAGCCCTTGGTTCTGGCACACAATTGTTTACACTAGCTGTTTTCATCTTCATGC 960
Query 1055 TTGCATTAGTCGGTGTCTTTTATCCCTACAACCGTGGAGCATTGTTTACTGCATTAGTGG 1114
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TTGCGTTAGTTGGTGTCTTTTATCCCTACAACCGTGGAGCATTGTTTACTGCATTAGTGG 1020
Query 1115 TCATATATGCTCTTACTTCAGGGATTGCCGGATATACTGCTGCTTCTTTCTATTGCCAGC 1174
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1021 TCATATATGCACTTACTTCAGGGATTGCCGGCTATACTGCTGCTTCTTTCTATTGCCAGC 1080
Query 1175 TAGAAGGAACTAACTGGGTTAGGAATGTTATACTGACTGGAAGCCTCTTCTGTGGACCTC 1234
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1081 TAGAAGGAACTAATTGGGTTAGGAATGTTATACTGACTGGAAGCCTTTTCTGTGGACCTC 1140
Query 1235 TTTTGATCACGTTCTCCTTCCTTAATACTGTTGCGATTGCTTACCAAGCCACTGCAGCGT 1294
||||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct 1141 TTTTGCTCACTTTCTCCTTTCTTAATACTGTTGCAATTGCTTACCAAGCCACTGCAGCAT 1200
Query 1295 TGCCATTTGGGACAATTGTGGTTATTTTCCTTATATGGGCTCTGGTTACTTCACCATTGT 1354
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1201 TGCCATTTGGGACAATTGTTGTTATTTTCCTTATATGGGCACTGGTTACTTCACCATTGT 1260
Query 1355 TAATATTAGGAGGTATTGCTGGGAAGAACAGAAAATCCGAGTTTCAAGCTCCTTGTCGTA 1414
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TAATACTGGGAGGTATTGCTGGGAAGAACAGAAAATCCGAGTTTCAAGCTCCTTGTCGTA 1320
Query 1415 CCACAAAATATCCAAGAGAGATCCCACCAATGCGTTGGTACCGGAGAACACTTCCGCAGA 1474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 CCACAAAATATCCAAGAGAGATCCCACCAATGCGTTGGTACCGGAGAACACTTCCGCAGA 1380
Query 1475 TGGCTATGGCTGGTTTTTTACCGTTCAGTGCCATTTACATCGAGCTTTACTACATATTTG 1534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TGGCTATGGCTGGTTTTTTACCGTTCAGTGCCATTTACATCGAGCTTTACTACATATTTG 1440
Query 1535 CCAGTGTTTGGGGTCACAGAATATACACCATCTATAGTATTCTGTCTATCGTCTTCCTTA 1594
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1441 CCAGTGTTTGGGGTCACAGAATATACACCATCTATAGTATTCTGTCTATTGTCTTCCTTA 1500
Query 1595 TTCTCGTTATAGTCACTGCTTTTATCACGGTTGCATTAACGTACTTCCAACTTGCTGCTG 1654
||||||| |||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 1501 TTCTCGTCATAGTCACTGCTTTCATCACGGTTGCATTGACATACTTCCAACTTGCTGCTG 1560
Query 1655 AAGACCATGAGTGGTGGTGGAGATCATTGCTATGCGGTGGATCAACGGGCTTATTCATAT 1714
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1561 AAGACCATGAGTGGTGGTGGAGATCATTGCTATGTGGTGGATCAACGGGCTTATTCATAT 1620
Query 1715 ATGCCTACTGCTTGTATTACTACTATGCACGATCAGATATGTCAGGGTTCATGCAGACTT 1774
| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1621 ACGCCTACTGCTTGTATTACTACTATGCACGGTCGGATATGTCAGGGTTCATGCAGACTT 1680
Query 1775 CCTTCTTCTTTGGCTACATGGCTTGCATCTGCTACGGATTCTTCCTCATGCTCGGGACAA 1834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 CCTTCTTCTTTGGCTACATGGCTTGCATCTGCTACGGATTCTTCCTCATGCTCGGGACAA 1740
Query 1835 TCGGATTCTGTGCTTCCCTTCTCTTTGTTCGTCACATTTACCGCTCAATCAAGTGCGAGT 1894
|||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1741 TCGGATTCCGTGCTTCCCTTCTCTTTGTCCGTCACATTTACCGCTCGATCAAGTGCGAGT 1800
Query 1895 AAAACTTG-AAGATTCTTCACTCCCT 1919
|||||||| |||||||||||||||||
Sbjct 1801 AAAACTTGGAAGATTCTTCACTCCCT 1826
> Ahg935928 jgi|Araly1|935928|scaffold_500119.1
Length=1822
Score = 867 bits (469), Expect = 0.0
Identities = 1347/1762 (76%), Gaps = 96/1762 (5%)
Strand=Plus/Plus
Query 187 TCCGACGGCTCCGATCACCGTTACAAGGTCGGTGA-TGATGTTCCTCTTTACGCTAACAA 245
||||| | ||| || ||||||||||||| ||| || | |||||||| ||||| |||||
Sbjct 90 TCCGATGCCTCAGACCACCGTTACAAGGACGGCGACT-CCGTTCCTCTCTACGCCAACAA 148
Query 246 AGTCGGACCGTTTCATAATCCCAGTGAAACATATCGATACTTT-GATCTTCCGTTCTGTT 304
|||||| |||||||| ||||||||||| || ||||| || ||| ||||| || || || |
Sbjct 149 AGTCGGTCCGTTTCACAATCCCAGTGAGACGTATCGCTA-TTTCGATCTCCCATTTTG-T 206
Query 305 CA-T-CAGCTCCTGTTAAGGAGAAGAAGGAGGCTCTAGGGGAAGTTCTT-AATGGAGAT- 360
| | ||| ||| || || |||||||| ||||| || || ||| || ||||| |||
Sbjct 207 -ATTCCAGAGGGTGTGAAAGATAAGAAGGAAGCTCTTGGTGAGGTT-TTGAATGGGGATA 264
Query 361 CGATTAGTCAGTGCACCTTACAAACTTGAGTTTTTG-G-GTGAG-AAGAACTCTGAAG-T 416
| || || ||||| || ||||| ||| | ||| | | | ||| ||| |||| || | |
Sbjct 265 GGCTT-GTTAGTGCTCCATACAAGCTT-AACTTTAGAGAG-GAGAAAG-ACTCAGATGTT 320
Query 417 TGCATGTAGAAAG-AGGTTGAGTAGAGAAGACGTTGCTA-AGTTTCG-TGATG-TGATTG 472
| | || ||||| || || || |||||||| || | | ||||||| || | || |||
Sbjct 321 TAC-TGCCGAAAGAAGCTT-AGCAGAGAAGAAGTCG-AACAGTTTCGAAGA-GCTG-TTG 375
Query 473 CGAAAGATTATTACTTTCAGATGTATTATGATGACTTGCCCATTTGGGGATTCCTTGGAA 532
|||||||||||||||||||||||||||||||| ||||| || ||||||||| ||||||
Sbjct 376 AAAAAGATTATTACTTTCAGATGTATTATGATGATTTGCCTATCTGGGGATTCATTGGAA 435
Query 533 AAGTTGTCAAGGAG-GGAAAGACTGA-CCCATCTGAGTAT-AAATATTAT-CTCTTCAAT 588
| |||| ||| ||| | ||| |||| || | | |||| | ||||||| | |||| |||
Sbjct 436 AGGTTGACAAAGAGAGCAAA-TCTGATCCGAGC-GAGT-TCAAATATT-TCCTCTACAAG 491
Query 589 CATC-TGCAGTTTGAGATTTTCTATAATAAGGACCGTGTTATCGAAAT-TATCG-TGAGG 645
|| | | || ||||||||||| ||||| ||||| | || || ||||| || | | ||
Sbjct 492 CA-CATCCAATTTGAGATTTTGTATAACAAGGATAGAGTGATTGAAATCAAT-GCT-AGA 548
Query 646 ACAGA-CCAGAATTTC-CTTGTGGA-CTTGACTGAGGACAAGGAAGTCCAAG-TGGA-TT 700
| || || | ||| |||||||| ||| |||||||| ||||||||| | | | || ||
Sbjct 549 ATGGATCC-TCA-TTCGCTTGTGGATCTT-ACTGAGGATAAGGAAGTCGATGCT-GAGTT 604
Query 701 TCACATACACAGTTCGATGGAAGGAAACTGAAATTCCATTCGAGAAGAGGATGGAGAA-- 758
| | ||||| || ||||||||||||||| | ||| || ||||| || ||||| ||
Sbjct 605 T-ATGTACACTGTGAAATGGAAGGAAACTGAGACTCCTTTTGAGAAAAGAATGGACAAGT 663
Query 759 ATACTCACTGGCTTCATCAATGCCACATCACTTGGAAATCCACTGGTTCTCCATCATTAA 818
|| || | || |||| || | |||||||||||||||||||||||||||||||| |||||
Sbjct 664 ATGCT-A-TGTCTTCTTCTCTTCCACATCACTTGGAAATCCACTGGTTCTCCATTATTAA 721
Query 819 TTCATGTGTCACAGTTCTTCTCTTGACTGGTTTCCTTGCGACGATTCTC-ATGCGAGT-C 876
|| || || || || || || ||||||||||||||||| || || || ||||| || |
Sbjct 722 CTCCTGCGTTACTGTCCTCCTTTTGACTGGTTTCCTTGCAACCAT-CTTGATGCGGGTTC 780
Query 877 TTGAAGAATGATTTTGTCAAGTATGCACATGATGAAGAGGCAGTTGATGACCAAGAAGAG 936
| ||||||||||| | |||||||| || ||||| || || | |||||| ||||| ||
Sbjct 781 TC-AAGAATGATTTCATGAAGTATGCTCAAGATGAGGAAGCTGCTGATGATCAAGAGGAA 839
Query 937 ACTGGGTGGAAATTGATCCATGGTGATGTATTTAGGTTCCCCAAA-CACAAATCCCTGCT 995
||||| ||||||| || || || ||||| || | ||||| ||| |||||||| || ||
Sbjct 840 ACTGGATGGAAATACATTCACGGAGATGTCTTCCGTTTCCC-AAAGCACAAATCTCT-CT 897
Query 996 G-GCTGCAGCCCTTGGTT-CTGGCACACAATTGTTTACACT-AGCTGTTTTCATCTTCAT 1052
|||||| | || || | || || || ||||| || || | | | ||||| |||||
Sbjct 898 TTGCTGCATCTCTCGGCAGC-GGTACCCAGTTGTTCACTCTGACCA-TCTTCATTTTCAT 955
Query 1053 GCTTGCA-TTAGTCGGTGTCTTTTATCCCTACAACCGTGGAGCATTGTTTACTGCATTAG 1111
|||| || || || || || || ||||| ||||||||||||||| | || || || || |
Sbjct 956 GCTTTCACTT-GTTGGAGTGTTCTATCCATACAACCGTGGAGCACTCTTCACCGCTTTGG 1014
Query 1112 TGGTCATATATGCTCTTACTTCAGGGATTGCCGGATATACTGC-TGCTTCTTTCTATTGC 1170
| || || || ||||| || || || ||||||||||| ||||| | || ||||||| ||
Sbjct 1015 TCGTGATCTACGCTCTCACATCTGGAATTGCCGGATACACTGCCTCCT-CTTTCTACTGT 1073
Query 1171 CAGCTAGAAGGAACTAACTGGGTTAGGAATGTTA-TACTGACTGGAAGCCTCTTCTGTGG 1229
|| || ||||||| || ||||| || ||| || | || || ||| | |||||||||||
Sbjct 1074 CAACTCGAAGGAAAGAATTGGGTGAGAAAT-TTGCTGCTTACGGGAGGTCTCTTCTGTGG 1132
Query 1230 ACCTCTTTTGATCACGTTCTCCTTCCTTAATACTGTTGCGATTGCTTACCAA-GCCACTG 1288
|| || || |||| |||| ||||| || || ||||| ||||| ||| | || ||||
Sbjct 1133 CCCACTATTCCTCACCTTCTGTTTCCTAAACACAGTTGCAATTGCCTAC-AGTGCAACTG 1191
Query 1289 CAGCG-TTGCCATTTGGGACAATTGTGGTTATTTTCCTTATATGGGCTCTGGTTACTTCA 1347
| || || || ||||| || ||||| || || |||| |||||| | || || |||||
Sbjct 1192 CCGCTCTTCCC-TTTGGAACCATTGTAGTGATCGTCCTCATATGGACACTAGTCACTTCG 1250
Query 1348 CCATTG-TTAATATTAGGAGGTATTGCTGGGAAGAACAGAAAATCCGAGTTTCAAGCTCC 1406
|| || || | || || |||||||| || || ||||| ||| | ||||| ||||||||
Sbjct 1251 CCTTTACTTG-TGTTGGGTGGTATTGCCGGTAAAAACAGCAAAGCTGAGTTCCAAGCTCC 1309
Query 1407 TTGTC-GTACCACAAAATATCCAAGAGAGATCCCACCAATGCGTTGGTACCGGAGAAC-A 1464
||| | ||||| || ||||| | |||||||| ||| | | |||||| |||| | |
Sbjct 1310 A-GTCCGCACCACTAAGTATCCTCGGGAGATCCCGCCACTCCCATGGTACAGGAGTGCTA 1368
Query 1465 CTTCCGCAGATGGCTATGGCTGGTTTT-TTACCGTTCAGTGCCATTTACATCGAGCTTTA 1523
| || |||||||| ||||| || ||| || || ||||||||||| ||||||||||| ||
Sbjct 1369 -TACCTCAGATGGCCATGGCCGGATTTCTT-CCTTTCAGTGCCATCTACATCGAGCTATA 1426
Query 1524 CTACATATTTGCCAGTGTTTGGGGTCA-CAGAATATACACCATCTATAGTATTCTGT-CT 1581
||||| ||||||||||||||||| || | | || |||||||| || || || || | |
Sbjct 1427 TTACATCTTTGCCAGTGTTTGGGGCCATC-GTATCTACACCATTTACAGCATCCTCTTC- 1484
Query 1582 ATCGTCTTCCTTATTCTCGTT-ATAGTCACTGCTTTTATCACGGTTGCA-TTAACGTACT 1639
||||||||| | || || ||| || |||||||||||||| || ||||| ||| | ||||
Sbjct 1485 ATCGTCTTCATCATCCT-GTTGATCGTCACTGCTTTTATAACAGTTGCCCTTA-CTTACT 1542
Query 1640 TCCAACTTGCTGCTGAAGACCATGAGTGGTGGTGGAGATCATTGCTATGCGGTGGATCAA 1699
||||||| ||||||||||| ||||| ||||||||||||||||| ||||| |||||||| |
Sbjct 1543 TCCAACTCGCTGCTGAAGATCATGAATGGTGGTGGAGATCATTCCTATGTGGTGGATCGA 1602
Query 1700 CGGG-CTTATTCATATATGCCTACTGCTTGTATTACTACTATGCACGATCAGATATGTCA 1758
| || || ||||| || || |||||||| || || ||||| ||| ||||||| |||||
Sbjct 1603 CTGGTCTG-TTCATCTACGCATACTGCTTATACTATTACTACGCAAGATCAGACATGTCC 1661
Query 1759 GGGTTCATGCAGACTTCCTTCTTCTTTGGCTACATGGCTTGCATCTGCTACGGATTCTTC 1818
|| |||||||| || ||||||||||| || |||||||||||||| || ||||| ||||||
Sbjct 1662 GGTTTCATGCAAACATCCTTCTTCTTCGGTTACATGGCTTGCATTTGTTACGGTTTCTTC 1721
Query 1819 CTCATGCTCGGGACAATCGGATTCTGTGCTTCCCTTCTCTTTGTTCGTCACATTTACCGC 1878
|||||||| || || | || ||| | ||| | || ||||| || || |||||||||||
Sbjct 1722 CTCATGCTTGGAACTGTTGGCTTCCGCGCTGCTCTCCTCTTCGTCCGCCACATTTACCGG 1781
Query 1879 TCAATCAAGTGCGAGTAAAACT 1900
|| || || |||||||||||||
Sbjct 1782 TCGATTAAATGCGAGTAAAACT 1803
> Ahg911263 jgi|Araly1|911263|Al_scaffold_0001_1517
Length=1599
Score = 754 bits (408), Expect = 0.0
Identities = 1032/1329 (78%), Gaps = 59/1329 (4%)
Strand=Plus/Plus
Query 598 TTTGAGATTTTCTATAATAAGGACCGTGTTATCGAAATTATCGTG--AGGACAGA-CCAG 654
||||||||| | || || ||||||||||| || || || | ||| |||| || ||
Sbjct 232 TTTGAGATTCTATACAACAAGGACCGTGTGATTGAGATCA--GTGCCAGGATGGATCC-T 288
Query 655 AATTTC-CTTGTGGACT-TGACTGAGGACAAGGAAGTCCAAGTGGA-TTTCACATACACA 711
| ||| |||||||| | | ||||||||||||||||| | | || ||| | |||| |
Sbjct 289 CA-TTCGCTTGTGGA-TCTCACTGAGGACAAGGAAGTTGATGCAGAGTTT-ATGTACA-A 344
Query 712 GT-TCG-A-TGGAAGGAAACTGAAATTCCATTCGAGAAGAGGATGGAGAAATACTC-ACT 767
| | | | ||||||||||| || | || || ||||| || |||||||| ||||| | |
Sbjct 345 -TGT-GAAGTGGAAGGAAACCGAGACCCCTTTTGAGAAAAGAATGGAGAAGTACTCTA-T 401
Query 768 GGCTTCATCAATGCCACATCACTTGGAAATCCACTGGTTCTCCATCATTAATTCATGTGT 827
| |||| || | |||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 402 GTCTTCTTCTCTTCCACATCACTTGGAAATCCACTGGTTCTCCATTATTAACTCATGTGT 461
Query 828 CACAGTTCTTCTCTTGACTGGTTTCCTTGCGACGATTCTCA-TGCGAGTCTTGAAGAATG 886
||| || ||||| ||| |||| |||||||| || || || | |||||||| | |||||||
Sbjct 462 CACTGTCCTTCTTTTGGCTGGATTCCTTGCAACTAT-CTTAATGCGAGTCCTCAAGAATG 520
Query 887 ATTTTGTCAAGTATGCACATGATGAAGAGGCAGTTGATGACCAAGAAGAGACTGGGTGGA 946
|||| | |||||||| || ||||| || || | |||||| ||||| || ||||| ||||
Sbjct 521 ATTTCATGAAGTATGCTCAAGATGAGGAAGCTGCTGATGATCAAGAGGAAACTGGATGGA 580
Query 947 AATTGATCCATGGTGATGTATTTAGGTTCCCCAAACACAAATCCCTGCTGGCTGCAGCCC 1006
| | |||||||||||||| ||| ||||||| | ||||| || | | || ||| |||
Sbjct 581 AGTACATCCATGGTGATGTGTTTCGGTTCCCTACTCACAATTCTTTATTTGCCGCATCCC 640
Query 1007 TTGGTTCTGGCACACAATTGTTTACACT-AGC-TGTTTTCATCTTCATGCTTGCA-TTAG 1063
| ||| |||||| |||||||| || || | | | ||| || ||||||||||| || |
Sbjct 641 TCGGTAGTGGCACTCAATTGTTCACGCTCACCATATTT--ATTTTCATGCTTGCTCTT-G 697
Query 1064 TCGGTGTCTTTTATCCC-TACAACCGTGGAGCATTGTTTACTGCATTAGTGGTCATATAT 1122
| || || || || ||| |||||||| |||||| | ||||| || || |||||||| ||
Sbjct 698 TTGGAGTGTTCTA-CCCATACAACCGAGGAGCACTCTTTACCGCTTTGGTGGTCATTTAC 756
Query 1123 GCTCTTACTTCAGGGATTGCCGGATATAC-TGCTGCTTCTTTCTATTGCCAGCTAGAAGG 1181
||||| ||||| || ||||||||||| || | | || |||||||| ||||| || |||||
Sbjct 757 GCTCTCACTTCTGGAATTGCCGGATACACATCC-GCCTCTTTCTACTGCCAACTTGAAGG 815
Query 1182 AACTAA-CTGGGTTAGGAA-T-GTTATACTGACTGGAAGCCTCTTCTGTGGACCTCTT-T 1237
|| || |||||| ||||| | |||| || ||||| | |||||||||| || || |
Sbjct 816 AAA-AAGCTGGGTGAGGAACTTGTTA--CTCACTGGGTGTATCTTCTGTGGCCCA-TTAT 871
Query 1238 TGATCACGTTCTCCTTCCTTAATACTGTTGCGATTGCTTAC-CAAGCCACTGCAGCGTTG 1296
| | || || | ||||||||| || || || || | ||| | || ||||| || ||
Sbjct 872 TCCTAACCTTTTGCTTCCTTAACACCGTAGCCATCACCTACACT-GCAACTGCTGCATTA 930
Query 1297 CCATTTGGGACAATTGTGGTTATTTTCCTTATATGGGCTCTGGTTACTTCACCATTGTTA 1356
|| ||||| || |||||||| || ||||||||||| |||| || || || || || |
Sbjct 931 CCCTTTGGAACCATTGTGGTGATCGTCCTTATATGGACTCTAGTCACATCGCCTTTACTC 990
Query 1357 ATATTAGGAGGTATTGCTGGG-AAGAACAGAAAATCCGAGTTTCAAGCTCCTTGTCGTAC 1415
| || || |||||||| ||| || ||||| ||| | ||||| ||||| || || |||||
Sbjct 991 GTCTTGGGTGGTATTGC-GGGTAAAAACAGCAAAGCAGAGTTCCAAGCACCATGCCGTAC 1049
Query 1416 CACAAAATATCCAAGAGAGATCCCACCAATGCGTTGGTACCGGAGAAC-ACTTCCGCAGA 1474
|| |||||||| | ||||| |||||| | | ||||||| | || | | |||| ||||
Sbjct 1050 AACCAAATATCCCCGTGAGATTCCACCACTCCCTTGGTACAGAAGTGCTA-TTCCTCAGA 1108
Query 1475 TGGCTATGGCTGGTTTT-TTACCGTTCAGTGCCATTTACATCGAGCTTTACTACATATTT 1533
|||| |||||||||||| || || ||||||||||| || ||||||||||||||||| |||
Sbjct 1109 TGGCCATGGCTGGTTTTCTT-CCTTTCAGTGCCATCTATATCGAGCTTTACTACAT-TTT 1166
Query 1534 -GCCAGTGTTTGGGGTCACAGAATATACACCATCTATAGTATTCTGT-CTATCGTCTTCC 1591
|| ||||| ||||||||| | || ||||||||||| || || || | | || ||||||
Sbjct 1167 CGCTAGTGTCTGGGGTCACCGGATCTACACCATCTACAGCATCCTCTTC-ATTGTCTTCA 1225
Query 1592 TTATTCTCGTTATAGTCACTGCTTTTATCACGGTTGCATTAACGTACTTCCAACTTGCTG 1651
| |||||| | ||||||||||||||||| || ||||| || || ||||||||||| ||||
Sbjct 1226 TCATTCTCATCATAGTCACTGCTTTTATAACCGTTGCCTTGACTTACTTCCAACTCGCTG 1285
Query 1652 CTGAAGACCATGAGTGGTGGTGGAGATCATTGCTATGCGGTGGATCAACGGG-CTTATTC 1710
||||||| || | ||||||||||||||||| || || |||||||| || || || |||
Sbjct 1286 CTGAAGATCACCAATGGTGGTGGAGATCATTCCTTTGTGGTGGATCGACCGGTCTG-TTC 1344
Query 1711 ATATATGCCTACTGCTTGTATTACTACTATGCACGATCAGATATGTCAGGGTTC-ATGCA 1769
|| || || |||||||| || || ||||||||||||||||| ||||| ||||| |||||
Sbjct 1345 ATCTACGCATACTGCTTATACTATTACTATGCACGATCAGACATGTC-GGGTTTTATGCA 1403
Query 1770 GACTTCCTTCTT-CTTTGGCTACATGGCTTGCATCTGCTACGGATTCTTCCTCATGCTCG 1828
|| || || || ||| || |||| ||||||||| ||||||||| ||||| | ||||| |
Sbjct 1404 AACCTCGTTTTTTCTTCGGATACAAGGCTTGCATTTGCTACGGACTCTTCTTAATGCT-G 1462
Query 1829 GGA-CAATCGGATTCTGTGCTTCCCTTCTCTTTGTTCGTCACATTTACCGCTCAATCAAG 1887
||| || |||| ||||||| |||| ||||| || |||||||||||||| || |||||
Sbjct 1463 GGAACAGTCGGCTTCTGTGGAGCCCTCCTCTTCGTCCGTCACATTTACCGGTCGATCAAA 1522
Query 1888 TGCGAGTAA 1896
|||||||||
Sbjct 1523 TGCGAGTAA 1531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80637048665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5