BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37320.1
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947361 jgi|Araly1|947361|scaffold_703590.1 248 9e-65
Ahg947362 jgi|Araly1|947362|scaffold_703591.1 241 2e-62
> Ahg947361 jgi|Araly1|947361|scaffold_703590.1
Length=263
Score = 248 bits (134), Expect = 9e-65
Identities = 191/218 (88%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 1 ATGGATCAAGGA-TCAGGGAAAACAATGATCAGTGTTCTTCTTGTACATCATGTGGACAA 59
||||||||| | || | ||| | |||||||| ||||||||||| ||||||| |||||||
Sbjct 27 ATGGATCAAATATTC-GAGAATAGAATGATCAATGTTCTTCTTGCACATCATTTGGACAA 85
Query 60 GAAAAACGTTGTCTGGATTCAATCTGGTAGTGACTTCGTTGATTTG-TTCTATAGTTTTC 118
|||||| |||||||||||||||||||||| ||| || ||||||||| || ||||||||||
Sbjct 86 GAAAAAGGTTGTCTGGATTCAATCTGGTAATGATTTTGTTGATTTGCTT-TATAGTTTTC 144
Query 119 TTACCATGCCTTTGGGAACAATTGTGAGATTGCTTGAGCATCACGGAAGATTAAAAGAAA 178
||||||||||||||||||| |||||||| ||||||||| ||||||||| ||||| |||||
Sbjct 145 TTACCATGCCTTTGGGAACCATTGTGAGGTTGCTTGAGAATCACGGAATATTAAGAGAAA 204
Query 179 AGGTCAGCATAGGTTGTTTCAACAACC-TTTATA-AAA 214
| |||||| |||||||| ||||||||| ||| || |||
Sbjct 205 AAGTCAGCGTAGGTTGTCTCAACAACCATTTTTAGAAA 242
> Ahg947362 jgi|Araly1|947362|scaffold_703591.1
Length=448
Score = 241 bits (130), Expect = 2e-62
Identities = 181/206 (88%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 464 GAGAAGAATCTGTAAGCAGATTGGGAGGTAGTTGTGATGATGATGGAGTCTTTGTCCATG 523
||||||||| || |||||||||||||||| || |||| |||||||||||||||||||||
Sbjct 211 GAGAAGAATTTGCAAGCAGATTGGGAGGTTGTAATGATTATGATGGAGTCTTTGTCCATG 270
Query 524 GTGATGGAAATATGGCATTTATGTTGAGTGATGATTTGACAATCGAGAATTTTTCTTGGG 583
||||||||||| | |||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 271 GTGATGGAAATTTTGCATTTGTAATGAGTGATGATTTGATAATCGAGAATTTTTCTTGGG 330
Query 584 ATCTTCCCCGGAAACGTGTCAAGGATTTAGGTTGCGTTAACGTGTTCGATAAGTTAGGG- 642
||||| || ||||| ||||||||||||||| ||||||||||| || ||| |||| ||
Sbjct 331 ATCTTTTCCTGAAACCTGTCAAGGATTTAGGCTGCGTTAACGTTTTAGATGAGTT-GGTA 389
Query 643 GAGGGTGAACCAGAAGTTGGCTTCCG 668
||||||||| ||||| ||||||||||
Sbjct 390 GAGGGTGAAGCAGAAATTGGCTTCCG 415
Score = 220 bits (119), Expect = 2e-56
Identities = 165/187 (88%), Gaps = 4/187 (2%)
Strand=Plus/Plus
Query 1 ATGGATCAAGGA-TCAGGGAAAACAATGATCAGTGTTCTTCTTGTACATCATGTGGACAA 59
||||||||| | || | ||| | |||||||| ||||||||||| ||||||| |||||||
Sbjct 27 ATGGATCAAATATTC-GAGAATAGAATGATCAATGTTCTTCTTGCACATCATTTGGACAA 85
Query 60 GAAAAACGTTGTCTGGATTCAATCTGGTAGTGACTTCGTTGATTTG-TTCTATAGTTTTC 118
|||||| |||||||||||||||||||||| ||| || ||||||||| || ||||||||||
Sbjct 86 GAAAAAGGTTGTCTGGATTCAATCTGGTAATGATTTTGTTGATTTGCTT-TATAGTTTTC 144
Query 119 TTACCATGCCTTTGGGAACAATTGTGAGATTGCTTGAGCATCACGGAAGATTAAAAGAAA 178
||||||||||||||||||| |||||||| ||||||||| ||||||||| ||||| |||||
Sbjct 145 TTACCATGCCTTTGGGAACCATTGTGAGGTTGCTTGAGAATCACGGAATATTAAGAGAAA 204
Query 179 AGGTCAG 185
| |||||
Sbjct 205 AAGTCAG 211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60830121265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5