BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37360.1
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493710 jgi|Araly1|493710|fgenesh2_kg.7__3143__AT5G37360.1 1788 0.0
> Ahg493710 jgi|Araly1|493710|fgenesh2_kg.7__3143__AT5G37360.1
Length=1261
Score = 1788 bits (968), Expect = 0.0
Identities = 1182/1279 (92%), Gaps = 40/1279 (3%)
Strand=Plus/Plus
Query 1 AAACGATGATGCCTCAAGAAACAGCTTCGACTCTACTACATTCAT-TGTCTAAAAGATCT 59
|||||||||||| |||||||||||||||||||| |||||||||| | ||||||||||||
Sbjct 1 AAACGATGATGCATCAAGAAACAGCTTCGACTC--CTACATTCATCT-TCTAAAAGATCT 57
Query 60 TTCGGTTGTTCACGAATTGTT-TCTGAGTTTGCCCA-AACACA-AACG-AATTGAGGAAA 115
|||| ||||||||||| | || ||||| |||| || |||||| || | |||||| | |
Sbjct 58 TTCGATTGTTCACGAA-TATTATCTGATTTTG-TCATAACACATAAAGAAATTGA--ATA 113
Query 116 ACTGAAAGATGGcttcttgttcttcttcttctattagtctcctccaacctcttcatagtc 175
|||||||||||||||| ||||||||||||| ||||||| || |||||||| || ||||
Sbjct 114 ACTGAAAGATGGCTTC---TTCTTCTTCTTCTCTTAGTCTTCTTCAACCTCTCCACAGTC 170
Query 176 tctcttcttccactcttttcttttctcagccaagttttcatttttcgtcctctctAAAAC 235
|||||||||||||||| |||||||||||||||||||||||||||||||| || || ||||
Sbjct 171 TCTCTTCTTCCACTCTCTTCTTTTCTCAGCCAAGTTTTCATTTTTCGTCATCCCTTAAAC 230
Query 236 CTAATAAGTCCAAAAGGCACAATCTTTCGAAATCCTTGACTCTCCGATTTGCTCTTACGG 295
|| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 231 CTCACAAGTCCAAAAGGCTCAATCTTTCGAAATCCTTGACTCTCCGATTTGCTCTTACGG 290
Query 296 AATCAGATTCTACTAAACCTCTAGAAATAGAAGAACCAAGTTCCAAATCCCTTCTTCTAC 355
|||||||||||||||||||||||| || | |||||||||||||||||||||||| ||||
Sbjct 291 AATCAGATTCTACTAAACCTCTAG-AA-A-CAGAACCAAGTTCCAAATCCCTTCTCCTAC 347
Query 356 AACTCTCTAAGTGTTTTGATCTTCCATCAGATTACTTCCAGCAGCTACCAAATGATCTTC 415
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 AACTATCTAAGTGTTTTGATCTTCCATCAGATTACTTCCAGCAGCTACCAAATGATCTTC 407
Query 416 GTCTCGATTTGAATGATGCGGCTTTTGATCTCTCCAATGGACCTGTCATCGATGAGTGTG 475
||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 408 GTCTCGATTTGAATGATGCTGCTTTTGATCTCTCCAATGGACCCGTTATCGATGAGTGTG 467
Query 476 GTCAAGAGCTTGGGGAGACCTTACTGAATCTGTCTCGTGCTTGGGAACAAGCTGACACAT 535
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 468 GTCAAGAGCTTGGGGAGACCTTACTAAATCTGTCCCGTGCTTGGGAACAAGCTGACACAT 527
Query 536 CAACTTCTCGTAGTTTAGTGGAGAAACTTCCCGAACTGGAAATTTTATTAACAGATGGTG 595
||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||
Sbjct 528 CAACTTCTCGTAGTTTAGTGGAGAAACTTCCCGAAGTGGAAAGTTCATTAACAGATGGTG 587
Query 596 CCAGATCAGCCTTTGGGAAGCGTTTGATATCTGCAGGAAAAAGGTTCCAGGGCATGGGAC 655
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 588 CCAGATCAGCCTTTGGGAGGCGTTTGATATCTGCAGGAAAAAGGTTCCAGGGCATGGGGC 647
Query 656 AATATGCCAAAGGTGAATTACAGAAGATTGCGAAAGCGATGATCACAACTGGAGGGG-TC 714
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 648 AATATGGTAAAGGTGAATTACAGAAGATTGCTAAAGCGATGATCACAACTGGAGGGGTTC 707
Query 715 TTATCTGCAAAAACATCATCTGTTTCAGTCAGCAATGAATCTAAGTCAGGAACAAGGATG 774
|||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 708 -TATCTGCAAATACATCATCTGATTCAGTCAGTAATGAATCTAAGTCAGGAACAAGGATG 766
Query 775 TTTAAGTTTGGGGAGCTTCAAGTTGCTGTGACTCCAGAGAAAGCCTACACCGGAGCTGCC 834
|||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 767 TTTAAGTTTGGGGAGCTTCAGGTTGCTGTGACTCCTCAGAAAGCCTACGCCGGAGCTGCC 826
Query 835 ATTGCGTTCATCTACGGGATACTTTCATGGCAAATCAGTCAAGGGATCCAAAGCATACCA 894
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 ATTGCATTCATCTATGGGATACTTTCATGGCAAATCAGTCAAGGGATCCAAAGCATACCA 886
Query 895 GAGAACTCATTGCAGTATGCAAATGACAATGCATTGCTAATCGGAAAGTCTCTAAGAGGG 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 GAGAACTCATTGCAGTATGCAAATGACAATGCATTGCTAATCGGAAAGTCTCTAAGAGGG 946
Query 955 TCTCTTCTAGCTCTGTTTTATGCGTCAACCGTCTTGTCAGGCTTCACAACAGCTGGGCTT 1014
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 947 TCTCTTCTAGCTTTGTTTTATGCGTCAACCGTCTTGTCAGGCTTCACAACAGTTGGGCTT 1006
Query 1015 ATCCTACTCGCTAAGCAGCTTTCATCAGAAAAAGAGTGAATTCATAATCCTTCAGGGGTG 1074
||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1007 ATCCTACTCGCTAAGGAGCTTTCATCAGAAAAAGAGTGAATTCATAATCCTTCATGTGTG 1066
Query 1075 GTCTCTATTACTCTCATGT--ACAGTGCCAAATATTCAA-ATTTACAATAGTAA-ATTTT 1130
||||||||||||||||||| | ||||||||||||| || ||| ||||||||| ||||
Sbjct 1067 GTCTCTATTACTCTCATGTGTATAGTGCCAAATATTGAATATT--CAATAGTAAGATTTA 1124
Query 1131 TCTACTTTCTCTGTCTATG--CGTTAAACTATGGAA--TGT-G--T-T-GAGTGTATAT- 1180
||||||| ||||||| || ||||||||||||||| ||| | | | ||||||||||
Sbjct 1125 -CTACTTTTTCTGTCTCTGTGCGTTAAACTATGGAACGTGTTGACTGTTGAGTGTATATA 1183
Query 1181 T-CTTATAGAGAAAACGAAATATCTTTGTTATGAATAATTGAAGTTTGC-CAAGCAATGA 1238
| ||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||
Sbjct 1184 TTCTTATAGAGAAAACGAAATATCTTTGTTACGAATAATTGAAGTTT-CTCAAGCAATGC 1242
Query 1239 GAGTGTTTGATGTTTGATG 1257
||| |||||||||||||||
Sbjct 1243 GAGAGTTTGATGTTTGATG 1261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119925412
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5