BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37370.1
Length=1490
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947365 jgi|Araly1|947365|scaffold_703594.1 1814 0.0
> Ahg947365 jgi|Araly1|947365|scaffold_703594.1
Length=1228
Score = 1814 bits (982), Expect = 0.0
Identities = 1143/1216 (94%), Gaps = 30/1216 (2%)
Strand=Plus/Plus
Query 142 ATAAAACATGGCGGAGATACAGTCAAATGGAAGGGCATATGAGTCATTATTGGAAAAGGT 201
|||||||||||||||||||||| | ||||| ||||| |||||||||||||||||||||||
Sbjct 14 ATAAAACATGGCGGAGATACAGACGAATGGGAGGGCGTATGAGTCATTATTGGAAAAGGT 73
Query 202 TCTTTCAATGAACATTCTTTCTTCTGACTATTTTAAAGAGCTCTATGGTTTAAAGACTTA 261
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 74 TCTTTCAATGAACATTCTTTCTTCTGACTATTTCAAAGAGCTCTATGGTTTAAAGACTTA 133
Query 262 TCATGAGGTAATTGATGAAATCTACAACCAAGTTAATCATGTGGAGCCGTGGATGGGTGG 321
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 TCATGAGGTTATTGATGAAATCTACAACCAAGTTAATCATGTGGAGCCGTGGATGGGTGG 193
Query 322 GAATTGCCGTGGTCCTTCAACAGCGTATTGTCTTCTCTACAAATTCTTTACCATGAAACT 381
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 AAACTGCCGCGGTCCTTCAACAGCGTATTGTCTTCTCTACAAATTCTTTACCATGAAACT 253
Query 382 TACAGTGAAGCAGATGCATGGACTGTTAAAGCACACAGATTCTCCTTATATTAGAGCGGT 441
||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 254 TACCGTGAAGCAGATGCATGGGTTGTTGAAGCACACAGATTCTCCTTATATTAGAGCGGT 313
Query 442 TGGATTCCTATATTTAAGATATGTTGCAGATGCAAAGACGTTGTGGACATGGTATGAACC 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 314 TGGATTCCTATATTTAAGATATGTTGCAGATGCAAAGACGTTGTGGACATGGTATGAGCC 373
Query 502 ATACATTAAAGATGATGAGGAGTTTTCACCAGGATCAAATGGACGGATGACGACAATGGG 561
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 374 ATACATTAAAGATGATGAGGAGTTTTCACCTGGATCAAATGGACGGATGACGACAATGGG 433
Query 562 TGTTTATGTACGTGATTTGCTGCTTGGACTGTACTACTTTGATACTTTGTTTCCTCGTAT 621
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 434 TGTTTATGTACGTGATTTGCTGCTTGGACTGTACTACTTTGATACTCTGTTTCCTCGTAT 493
Query 622 ACCTGTTCCTGTCATGCGCCAGATTGTATCAAACCTTGAGAAGATGAATTTACCAACTAA 681
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 ACCTGTTCCCGTGATGCGCCAGATTGTATCAAACCTTGAGAAGATGAATTTACCAACTAA 553
Query 682 ACCTTCTGGTTCAACCGGAGACATGACCCGTGGCTCAGAAGACACTGCCCGTCGTCCACC 741
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 ACCTTCTGGATCAACCGGAGACATGACCCGTGGCTCAGAAGACACTGCCCGTCGTCCACC 613
Query 742 ATCAGTAAAAGCATCCCTCTCTGTTTCATTTGGTCAGCGTGCACCTCATCGTGCTTCCAC 801
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 614 ATCAGTAAAAGCATCCCTCTCTGTATCATTTGGTCAGCGTGCACCTCATCGTGCTTCCAC 673
Query 802 CAGAGGCTCTTCTCCTGTTCGCCGTCCTCCACCGACTGGTTATGACAGAAATGGAGGCGA 861
||||||||| ||||| |||||||||||||||| | |||||||||||||||||||||||||
Sbjct 674 CAGAGGCTCCTCTCCGGTTCGCCGTCCTCCACTGTCTGGTTATGACAGAAATGGAGGCGA 733
Query 862 TGAAGTACAACAGCGGTCCCCACGTAGAAGCCAGAGCCGAGACTATTATTCTGACagaga 921
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 734 TGAAGTAAAACAGCGGTCCCCACGTAGAAGCCAGAGCCGAGACTATTATTCTGATAGAGA 793
Query 922 ctcagatagacaacgggaaagagagagggagaaagaccgcgaaag--a--gaga--g-g- 973
|||||||||||| ||||| |||||||||||||||||||||||||| | |||| | |
Sbjct 794 CTCAGATAGACAGCGGGAGAGAGAGAGGGAGAAAGACCGCGAAAGGGACAGAGACAGAGA 853
Query 974 --gggag-gg-a------tagatacagagaaagggaaagggaTTATGGTAATGATAGGAG 1023
||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 CAGGGAGAGGGAGAGAGATAGATACAGAGAAAGGGAAAGGGATTATGGTAATGATAGGAG 913
Query 1024 ATCAAGGCGTGACTATGATAGTAGAAGCAGGCGCAATGATTATGAGGACGACAGAAGTAG 1083
||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||
Sbjct 914 ATCAAGGCGTGACTATGATAGTAGAAGCAAACGCAATGATTATGAGGATGATAGAAGCAG 973
Query 1084 ACATGACCGGAGAAGCAGGAGCAGAAGCAGAAGTAGGAGCAGGAGTGTGCAGATTGAGCG 1143
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 ACATAACCGGAGAAGCAGGAGCAGAAGCAGAAGTAGGAGCAGGAGTGTGCAGATTGAGCG 1033
Query 1144 TGAACCGACTCCTAAAAGAGATAGTAGCAACAAAGAGAAATCGGCGGTGACAGTGAACAG 1203
|||||| ||||||| | |||||| |||||||| || ||||| ||||||||
Sbjct 1034 TGAACCAACTCCTA---G---------CAACAAGGAGAAATCTGCTGTGACTGTGAACAG 1081
Query 1204 CAATCTCGCAAAGCTAAAAGATTTGTATGGAGACGCAAGTAGTCAGAAAAGGGATGAAGG 1263
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1082 CAATCTCGCAAAGCTAAAAGATTTGTATGGAGACGCGAGTAGTCAGAAAAGGGATGAAGG 1141
Query 1264 ATTTGGAACAAGGAAAGATTCAAGTTCAGAAGAAGTGATAAAGCTTGGTGGTTCCTCTTG 1323
|||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1142 ATTTGGAACAAGGAGAGATTCAAGTTCAGAAGAAGTGATAAAGCTTGGTGGCTCTTCTTG 1201
Query 1324 GAGGTGAAAAAACAAA 1339
||||||||||||||||
Sbjct 1202 GAGGTGAAAAAACAAA 1217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55764118680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5