BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37380.1
Length=1862
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493716 jgi|Araly1|493716|fgenesh2_kg.7__3149__AT5G37380.4 1127 0.0
> Ahg493716 jgi|Araly1|493716|fgenesh2_kg.7__3149__AT5G37380.4
Length=1545
Score = 1127 bits (610), Expect = 0.0
Identities = 822/917 (90%), Gaps = 44/917 (5%)
Strand=Plus/Plus
Query 823 CCCAGAAGACCAATCCGCCTGCCCAGAAGACCAATCCGCCAGCCCAGAAGAACAATCCTC 882
|||||| || ||||| ||| |||||||||| ||||||||| ||||||||||||||||| |
Sbjct 644 CCCAGAGGAACAATCAGCCAGCCCAGAAGAACAATCCGCCGGCCCAGAAGAACAATCCGC 703
Query 883 CGACCCAAAAGAACAATCCGCAAAAGCCAGTTGGTACTACACAGAAAACAGGAC-GTACT 941
||||||| ||||||||||| |||||||||||||||| ||||||||||||||||| | ||
Sbjct 704 CGACCCAGAAGAACAATCCACAAAAGCCAGTTGGTAATACACAGAAAACAGGACAG-ACG 762
Query 942 GATA-ATCACACAACAACACCAAACTCATTTACTGCATCTGGGTCATCAGACCAATCAAA 1000
|| | |||||||||||||||||| |||||| ||||||||| |||||||||||||||||
Sbjct 763 GA-ACATCACACAACAACACCAAGTTCATTTGCTGCATCTGCATCATCAGACCAATCAAA 821
Query 1001 GTCGAATACTTTCTGGACAGTCTGCAGGAGATGCATGATGCAGTACGAGTATCTAAGAGT 1060
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 822 GTCGAATACTTTCTGGACAGTCTGCAGGAGATGCATGATGCAGTACGAGTATCTAAGATT 881
Query 1061 TTATGTCAACTGTAACCTTCGGTGTCCTAATTGTCTACAGTCCTATTTGGCAGTAGAAGT 1120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 882 TTATGTCAACTGTAACCTTCGGTGTCCTAATTGTCTACAGTCGTATTTGGCAGTAGAAGT 941
Query 1121 CCCTAAACCAGGTATTTCAAGCCGTTGGAGTAGTTGCAGCCG--T----------CT--A 1166
||||||||||||||| ||||||||||||||||||| |||||| | || |
Sbjct 942 CCCTAAACCAGGTATATCAAGCCGTTGGAGTAGTTTCAGCCGTCTAAAGCGAAACCTGGA 1001
Query 1167 ----AAGTCAGCTGCAAACCACAATACTACTTCAGGTTTATTTAATAACTCCAAGTGGAC 1222
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1002 TCCGAAGTCAGCTGCGAACCACAACACTACTTCAGGTTTATTTAATAACTCCAAGTGGAC 1061
Query 1223 ATTCTCAAGAACCAGCAGTGCAGCTCATGCTGCAAGTGTGGTTCAACATGCTTATGAGAA 1282
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1062 ATTCTCAAGAACCAGCAGTGCAGCTCATGCTGCTAGTGTGGTTCAACAGGCTTATGAGAA 1121
Query 1283 GGTAAAGAAAGATCGCGAGCAGGCGAAAGCAACCGCGAGAAGAGAAAAGAAGAATGCCAA 1342
||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1122 GGTCAAGAAAGAACGCGAGCAGGCGAAAGCAACCGCGAGAAGAGAAAAGAAGAACGCCAA 1181
Query 1343 AAGAAAGAGCACAACTGATTCGTCTGCTTCTGGTAGTTCGCTTAAAAAGAGGAAAGTTTG 1402
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1182 AAGGAAGAGCACAACTGATTCGTCTGCTTCTGGTAGTTCGCTTAAAAAAAGGAAAGTTCG 1241
Query 1403 TTTAGAAACTGATATCGGTTGCTCTAGTGGAAGAGAGGTCACTTACCGTGTGACTGGTGA 1462
| ||||| |||| | ||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 1242 TGGAGAAAATGATGTTGGTTGCTCTGGTGGAAGAAAGGTCACTTACTGTGTGACTGGTGA 1301
Query 1463 AAACGGAAAAAACATGGGAAAGTTAGAACATGGAACCAAAGAGAG-TGCGGACAAGTTGT 1521
|| ||||||||||||| ||||||||||||||| |||||||||||| | |||||||||| |
Sbjct 1302 AACCGGAAAAAACATGAGAAAGTTAGAACATGAAACCAAAGAGAGAT-CGGACAAGTTCT 1360
Query 1522 CTCTTAGAAGAACCCAGAGAAAGATTAGCAAGGAGAATGTTACAAGAGAGGTAAAGTCGC 1581
||| |||||||||||||||||| |||||||||||| |||| | ||| | |||
Sbjct 1361 CTCCTAGAAGAACCCAGAGAAATATTAGCAAGGAGGATGT-A-AAG-----T-----CGC 1408
Query 1582 GTTAGCATTCTGACCCCGTTGAGTGAGGTTTAAGTTATGCAGGCATAATT-T-ATTGATG 1639
|||||||||||||| |||||||||||||| |||||||||||||||||| | |||||||
Sbjct 1409 GTTAGCATTCTGACTTGGTTGAGTGAGGTTTGAGTTATGCAGGCATAATTGTGATTGATG 1468
Query 1640 GATTCTCCAGGCTATAACCAGTCA-TA---TAT-TTT-GTAAGTTGGGTCATTCGGTAAT 1693
|||||||||||||||||||||||| || ||| ||| ||||||||||||||||||||||
Sbjct 1469 GATTCTCCAGGCTATAACCAGTCACTAGGATATATTTTGTAAGTTGGGTCATTCGGTAAT 1528
Query 1694 CTTTTGGTTCTAACATT 1710
||| ||||||||||||
Sbjct 1529 ATTTGGGTTCTAACATT 1545
Score = 913 bits (494), Expect = 0.0
Identities = 545/570 (96%), Gaps = 2/570 (0%)
Strand=Plus/Plus
Query 291 ATGGAGTGCAACAAAGACGAGGCGACGAGGGCGAAAGAAATTGCAGAGAACAAGTTCAAA 350
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 154 ATGGAGTGCAACAAAGACGAGGCGGCAAGGGCGAAAGAAATTGCAGAGAACAAGTTCAAA 213
Query 351 ATGAAAGACATTGCCGGGGCTAAGAAATTTGCCTTGAAAGCTCAAAATCTGTATCCAGAG 410
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 214 ATGAAAGACATTGCTGGGGCCAAGAAATTTGCCTTGAAAGCTCAAAATCTGTATCCAGAG 273
Query 411 ATAGAAGGTGTTTCTCAGATGTTAGCAACCTTGGATGTGTATATCGCTGCAGAAAACAAA 470
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 274 ATAGAAGGTGTTTCTCAGATGTTAGCAACCTTGGATGTGTATATTGCTGCAGAAAACAAA 333
Query 471 GTAAACGAGGATGTCGACTGGTATGGAATACTCAATGCAAGTCCTCGGGATGATGATGAA 530
|||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 334 GTAAACGAGGATGTAGACTGGTATGGAATACTCAATGCAAGTCCGCGCGATGATGATGAA 393
Query 531 ACGTTGAAGAGAAAGTACAGGAAGCTTGCTCTAATGCTTCACCCCGATAAAAACAAGTCT 590
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 394 ACGTTGAAGAGAAAGTACAGGAAGCTTGCTCTAATGCTCCACCCGGATAAAAACAAGTCT 453
Query 591 ATAGGAGCTGAAGGGGCATTCAAACATGTTTCTGAAGCTTGGAAATTCTTGTCAGATAAG 650
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 ATAGGAGCTGAAGGAGCATTCAAACATGTTTCTGAAGCTTGGAAATTCTTGTCAGATAAG 513
Query 651 GAAAAGAGAGCAGCTTATGATCGTAGGAAAAGTTTGCACTCAGTTTATCAGAAGGTCTCA 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 514 GAAAAGAGAGCAGCTTATGATCGTAGGAAAAGTTTGCACTCAGTTTATCAGAAGGTCACA 573
Query 711 GTTTCATCTTCTAATAACGGGTTCTGCAATTTCGCCAAGACTACTTTCACTACAAATGCA 770
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 574 GTTTCGTCTTCTAATAACGGTTTCTGCAATTTCGCCAAGACTACTTTCACTACAAATGCG 633
Query 771 AGGACGACGACCCCGAGAAACAATCCGCCGGCCCAGAAGACCAATCCGCCAGCCCAGAAG 830
||||||||||||| ||| ||||||| ||| |||||||||| ||||||||| |||||||||
Sbjct 634 AGGACGACGACCCAGAGGAACAATCAGCCAGCCCAGAAGAACAATCCGCCGGCCCAGAAG 693
Query 831 ACCAATCCGCCTG-CCCAGAAGACCAATCC 859
| ||||||||| | ||||||||| ||||||
Sbjct 694 AACAATCCGCC-GACCCAGAAGAACAATCC 722
Score = 230 bits (124), Expect = 4e-59
Identities = 135/140 (96%), Gaps = 2/140 (1%)
Strand=Plus/Plus
Query 1 GAAACGCAACTGGTGTGAGTGATTCTAGCGTTTTCTCTCGTCGCATCTTCTCTT-TTCAT 59
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 10 GAAACGCAACTGGTGTGAGTGATTCTAGCGTTTTCTCTCGTCGCATCTTCT-TTCTTCAT 68
Query 60 CTTTGACCCTAAAACTTTGCAAATCTCGAGCTTTCAGGTTTAATCGATTTTGATGTTGTT 119
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 69 CTTTGACCCTAAAACTCTGCAAATCTCGAGTTTTCAGGTTTAATCGATTTTGATGTTGTT 128
Query 120 GCTAATCCCGTAGAAATCAG 139
||||||||||||| ||||||
Sbjct 129 GCTAATCCCGTAGGAATCAG 148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69933689820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5