BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37400.1
Length=2004
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493718 jgi|Araly1|493718|fgenesh2_kg.7__3151__AT5G37400.1 2536 0.0
Ahg891369 jgi|Araly1|891369|Al_scaffold_0007_3355 811 0.0
Ahg947388 jgi|Araly1|947388|scaffold_703617.1 460 1e-128
> Ahg493718 jgi|Araly1|493718|fgenesh2_kg.7__3151__AT5G37400.1
Length=2013
Score = 2536 bits (1373), Expect = 0.0
Identities = 1812/2020 (90%), Gaps = 46/2020 (2%)
Strand=Plus/Plus
Query 1 ATGGAAGAATCCGATTCCGGTGAAACAGCAACGGCAAAAATTTCGTCTCTTACGTTGAAA 60
|||||||||||||||||||| ||||| |||||||| ||| ||||| |||||||||||||
Sbjct 7 ATGGAAGAATCCGATTCCGGAGAAACTGCAACGGCGAAATTTTCGAATCTTACGTTGAAA 66
Query 61 TCTAGGGCTATACTTGCGACTCCAAGCAACGAAGAAATAGCGATTATCGTCGAACAAGTC 120
|||||||||| |||||||| ||||||||||||||| ||||||| |||||||||||| ||
Sbjct 67 GCTAGGGCTATTCTTGCGACACCAAGCAACGAAGAATTAGCGATGATCGTCGAACAACTC 126
Query 121 TATACACCTCAAGAATCCGACGAACACAAATCAGCGCGAGCTCTGTTCGATTTCTGCGTC 180
|||| ||| |||||||||||||| |||||||||| |||||||||||| |||||||||||
Sbjct 127 TATATGCCTGAAGAATCCGACGAATACAAATCAGCTCGAGCTCTGTTCAATTTCTGCGTC 186
Query 181 TCTACTTTCCCAAATTGCTTAACCCTAAAGCTTCTCACGGTGTATCGATTTTCTTCCGAC 240
||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 187 TCTGGTTTCCCAAATTGCTTAACCCTAAAGCTGCTCATGGTGTATCGATTTTCTTCCGAC 246
Query 241 GACGATTTCCGATTACGATCGATCTGTCTTCTAACTGAAACTCTAAAAGCTCAGCGATTC 300
|| | |||||||||||||||||||| |||| | |||||||||| |||||||||||||||
Sbjct 247 GAGGTTTTCCGATTACGATCGATCTTTCTTATTTCTGAAACTCTCAAAGCTCAGCGATTC 306
Query 301 GAACTCTCTCTTGTCACTCTCCATGAAATCAAACCACTTCTGATTTCTTGCTTGACAATG 360
||||||||||| || |||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 307 GAACTCTCTCTCGTTGCTCTTCATGAAATCAAACCACTTCTGATTTCTTGCTTGACGATG 366
Query 361 CAAAACCCTAAATATTGTGACTCAAAGATTGTGAGAATCA--------TT---G--T--T 405
||||| ||||| | | ||||||||||||||||||||||| || | | |
Sbjct 367 GAAAACGCTAAAAAGTCTGACTCAAAGATTGTGAGAATCATCGTTTCTTTAGGGCTTGAT 426
Query 406 T---CTTTAGTAGCTGATAAAGTTGGTGTCTGGGAAGAGATGAGTGATTGTATACTCTCA 462
| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 427 TGGCCCTTAGTAGCTGATAAAGTTGGCGTCTGGGAAGAGATGAGTGATTGTATACTCTCA 486
Query 463 CTTGTTGTCAATGATCCGATTAGGGCTTTTGAGGTCTTTATCCAATTGCCATCATCACTC 522
|||| | ||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 487 CTTGCTATCAATGATCCGATTAGGGCTTTTCAGGTCTTTATCCAATTGCCATCGTCACTT 546
Query 523 TACGGAGAATTCATTTACCGGTTTCTGCAGAATTTTCTTGATGAAGTTTACAAGATTTTG 582
|||||||||||| | ||||| ||| |||||| |||||||||||||||||||||| |||||
Sbjct 547 TACGGAGAATTCGTGTACCGATTTTTGCAGAGTTTTCTTGATGAAGTTTACAAGGTTTTG 606
Query 583 CTTCGTCCTGTGGAATATGAAGTTGAAGTTTGGATCTTGGCTTTGAAATCTGCTGTTAAA 642
|||| ||||| ||| ||| |||||||| ||||||||||||||| |||||||||||||||
Sbjct 607 CTTCATCCTGAAGAAGATGGAGTTGAAGATTGGATCTTGGCTTTAAAATCTGCTGTTAAA 666
Query 643 ATGGGGATTTTGCTTATGGATTCAGAAATGAGATTTGATTTGACAAGAGACATTCTTCAC 702
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 667 ATGGGGATTTTGCTTATGGATTCGGAGATGAGATTTGATTTGACAAGAGACATTCTTCAC 726
Query 703 ATTGTTTGGAAATGTTCTCTTGATGTTGTGTGGAAT-GATATGGAAGAAGAGTTTCTGCT 761
||||||||||||| | ||| ||| |||||||| || || || |||||||||||||||||
Sbjct 727 ATTGTTTGGAAATCTGCTCATGACATTGTGTGGCATGGA-ATTGAAGAAGAGTTTCTGCT 785
Query 762 AAATGGACTTGATTCTCTTGAGATTTTCTTGGTGGAAGACGCGAACAAGTTTAAGTGGAA 821
||| |||||| | ||||||||||||||||||| |||||||||| || |||||||||||||
Sbjct 786 AAAAGGACTTAAATCTCTTGAGATTTTCTTGGCGGAAGACGCGTACCAGTTTAAGTGGAA 845
Query 822 TAGTGATCAATGCAGGTTTGTGGCAGAGTTTGCGTTTAAGATTTCAGATATCGGAAAAGA 881
|||||||||||||| ||||||||||||||||||||| | ||||||||| ||||||| |||
Sbjct 846 TAGTGATCAATGCATGTTTGTGGCAGAGTTTGCGTTCAGGATTTCAGAGATCGGAACAGA 905
Query 882 GGCCAAGGAAGTTGCTTGGAAGATCTATCGAATGGTTACAAAGCTGGATAAGTATGTGCA 941
||| |||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 906 GGCTAAGGAAGTTGCTTGGAAGATCTATCGAATGGTTACAAAACTTGACAAGTATGTGCA 965
Query 942 CAATCCAGCTTTCGAA-T--TTAGCCCTTTTCG-CAATGAGAATAAATATCTTGGAGTAG 997
|||||||||||||||| | ||||||| | | | ||||| || |||||||||||||||
Sbjct 966 CAATCCAGCTTTCGAACTCAGCAGCCCTTCT-GACGATGAGGATGAATATCTTGGAGTAG 1024
Query 998 ATGATGTTTGTGACTTAGAAGACATTTTGGATGCTTTATCTCCAGTGGAAATCATGAGAA 1057
|| | || || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 ATTCTCACTGGGATTTGGAAGACATTTTGGATGCTTTATCTCCAGTGGAAATCATGAGAG 1084
Query 1058 AGGTTTCAGTAGGTCAAG-TTCCTAATAGGTTGAGAGAGATAGCTATCACGAGACTTTAT 1116
|||||||| || || ||| || |||||||| ||| |||||||| |||| |||||| ||
Sbjct 1085 AGGTTTCATTAAGT-AAGCTTGATAATAGGTCGAGGGAGATAGCAATCATGAGACTCCAT 1143
Query 1117 GAGTTATTTTGTGATCACACTGCTGGGAAAGGGGATATAAGTATTTCAGAGATTAGAGAA 1176
||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||
Sbjct 1144 GAGTTATTTTGTGATCACACTGCTGGGAAAGAGGAAATAAGTGTTTCAGAGATTAGAGAA 1203
Query 1177 ATCCAGCCGTTGCTCATCTCTTGCCTTGCAG-AGATAGGAATTCCTGAGAGCACGTTTAA 1235
|||||||||||||||||||||||||||| || || ||||| |||| ||||||||| | ||
Sbjct 1204 ATCCAGCCGTTGCTCATCTCTTGCCTTGAAGAAG-TAGGAGTTCCCGAGAGCACGATCAA 1262
Query 1236 GATTCTCTGTCAGGTGGTGTTCCATGTTTTACATGAGTTGTCTAGCTACCAAGAGGACAA 1295
||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1263 GATTCTCGGTCAGGTGGTCTTCCATGTTTTACATGAGTTGTCTAGTTACCAAGAGGACAA 1322
Query 1296 CTGGTTTGGTCTATGGGACTACATTGCAACAGAAAGCAAAACAGAGTTCATGAAGACAGT 1355
|||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||| ||
Sbjct 1323 CTGGTTTGGTCTATGGGACTACATTGCAACAGAATGCAAAACAGTGTTCAAGAAGACGGT 1382
Query 1356 TTATATCTTCCAGTGCTTAACAATGCGGCTCGATGATAAAGAGTTTGTGATTCATGCGAT 1415
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1383 TTTTATCTTCCAGTGCTTAACAATGCGGCTTGATGATAAAGAGTTTGTGATTCATGCCAT 1442
Query 1416 TAATAATCTTCTTCCAGAGATTCACAGACACCTAAACCCACCAAGAGACTTGTTGGTAGA 1475
|||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||
Sbjct 1443 TAATAATCTTCTTCCAGAGATTCACAGAAACCTAAACCCACCAAGAGACTTGTCGGAAGA 1502
Query 1476 TGAA-AATTGCTGGGTCTTGGCGTTTACGGGTGCGTTCTGTGCAGCAATTCACTTGATAG 1534
| || ||||| |||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1503 T-AACAATTGTTGGGTCTTAGCGTTTGCGGGTGCGTTCTGTGCAGCAATTCACTTGATAG 1561
Query 1535 AGATCTCAAGTCATGCTCAATACTTGAAGGAGATTGCATATAAGATGATAGATTCAGTGA 1594
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 AGATCTCAAGTCACGCTGAATACTTGAAGGAGATTGCATATAAGATGATAGATTCAGTGA 1621
Query 1595 GGGAGCTTGTGGGAAGAGGAATGGAAGTTGAGCTTGTGAGGAGAGCTTTCATAAATATGG 1654
| || |||||| ||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1622 GAGAAATTGTGGAAAGAGGAATGGAACTTGAGCTAGTGAGGAGAGCTTTCATAAATATGG 1681
Query 1655 AAAGCATTGTGGAGAAACAATATGACTGTTACACTACTAGTGACTACAGATTCGTTAAGG 1714
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1682 AAAGCATTGTGGAGAAACAATATGACTGTTACACTACTAATGACTACAGATTCGTTAAGG 1741
Query 1715 GTTTGGTTTGGA-AGCTCTATGCAATCAAAGACATCAGCGTGGAAACTCAGTGTGTGTTG 1773
|||||||||||| | |||||||||||||||| ||| ||| |||||||| ||| |||||||
Sbjct 1742 GTTTGGTTTGGAGA-CTCTATGCAATCAAAGGCATGAGCATGGAAACTAAGTCTGTGTTG 1800
Query 1774 TGGAGAATCAACGTGATTCTGGAAAAAGTGCAGGAGGTAAAAGAGCTCCCAAAGAGTGAC 1833
||||||||||| |||| ||||||| | |||||||||||||||| |||||||||||||||
Sbjct 1801 TGGAGAATCAATGTGACTCTGGAAGAGGTGCAGGAGGTAAAAGTGCTCCCAAAGAGTGAG 1860
Query 1834 CTTGATTGGCTGAACCAACCCGAGACTTTAGGCAATTGAGtttttttttttttttCTT-C 1892
|||||||||||||||||||||||||||||||| |||||||||||| ||||||| || | |
Sbjct 1861 CTTGATTGGCTGAACCAACCCGAGACTTTAGGAAATTGAGTTTTTGTTTTTTTGTCATAC 1920
Query 1893 ATAGTTTGGTTTGTGTAGGAGAAGAAAAGAAACCT-ATGTTCCTAACTCTCATATCTACT 1951
| |||||||||||||||||||||||| | | | |||| || || |||| ||||||||
Sbjct 1921 A-AGTTTGGTTTGTGTAGGAGAAGAA--G---CTTTATGTACCGAATTCTCTTATCTACT 1974
Query 1952 GCTTTCTT-G-T--CTACTGTTTTTTGTAAATAGCCCTTA 1987
| |||||| | | ||||||||||| ||||||||||||||
Sbjct 1975 GTTTTCTTTGATGTCTACTGTTTTT-GTAAATAGCCCTTA 2013
> Ahg891369 jgi|Araly1|891369|Al_scaffold_0007_3355
Length=1845
Score = 811 bits (439), Expect = 0.0
Identities = 1433/1891 (76%), Gaps = 155/1891 (8%)
Strand=Plus/Plus
Query 73 CTTGCGACTCCAAGCAACGAAGAAATAGCGATTATCGTCGAACAAGTCTAT-ACACCTCA 131
||||||||||||||| |||||| || | || ||| |||| ||| ||| | |||| | |
Sbjct 19 CTTGCGACTCCAAGCCACGAAGGTTTAACAATGATCATCGATCAACTCT-TCACACGTAA 77
Query 132 AGAATCCGACGAACACAAATCAGCGCG-AGCTCTGTTCGATTTCTGCGTCTCT-ACTTTC 189
| ||||||| ||| ||||| |||| || | |||| | |||||||| ||||||| || |||
Sbjct 78 ACAATCCGAAGAATACAAAACAGCTCGTA-CTCTCTACGATTTCTTCGTCTCTAAC-TTC 135
Query 190 CCAAATTGCTTAACCCTAAAGCTTCTCACGGTGTATCGATT--TTCTTCCGACGACGAT- 246
|||||||||||||||||||||||||||| | | |||| || ||||||||| || | |
Sbjct 136 CCAAATTGCTTAACCCTAAAGCTTCTCAAGATCTATC--TTCATTCTTCCGATGAAG-TC 192
Query 247 -TTCCGATTACGATCGATCTGT--CTTCTAACTGAAACTCTAAAAGCT----CAG--CG- 296
|| || | ||||| |||||| | ||| |||||||||| | | || ||
Sbjct 193 CTTA-GACTCCGATCAATCTGTTACCTCT--CTGAAACTCTCCCCGGTTTAACAAATCGC 249
Query 297 A--TTCGAACTCTCTCTTGTCACTCTCCATGAAATCAAACCACTTCTGATTTCTTGCTTG 354
| ||| ||||||||||| || ||||||||||||||||||| ||| ||||||||||||||
Sbjct 250 AACTTCAAACTCTCTCTTATCGCTCTCCATGAAATCAAACCGCTTTTGATTTCTTGCTTG 309
Query 355 ACAATGCAAAACCCTA-AATATTGTGACT-CAAAGATTGTGA-GAATCATTGTTTCTTTA 411
||| |||||| || | || || |||| | | || || | | || |||||||||||||
Sbjct 310 ACACGGCAAAATCCAAGAAAAT-GTGA-TACCAAT-TTCTTAAGAGTCATTGTTTCTTTC 366
Query 412 GTAGCTGATAAAGTTG-GTGT-CTG-----GGAAGA-G--ATGAG-TGATTG--TATA-- 456
|||||||| || ||| | || || |||||| | | ||| | | || ||||
Sbjct 367 GTAGCTGAGAATGTTATGAGTTCTTATAATGGAAGATGGGAAGAGCTTAGTGAGTATATA 426
Query 457 CTCTCACTTGTTG--TCAATGATCCGATTAGGGCTTTTGAGGT-CTTTATCCAATTGCCA 513
|| | ||||| | |||| |||||| ||||||| ||| | | ||| ||| ||||||||
Sbjct 427 CTGTTGCTTGT-GAATCAA-GATCCGGTTAGGGCGTTTAAT-TACTTCATCGAATTGCCA 483
Query 514 TCATCACTCTACGGAGAATTCATTTACCGGTTTCT-GCAGAATTTTCTTGATGAAGTTTA 572
| | || ||||| || |||||| ||||||| || | |||| || | ||| ||||| ||
Sbjct 484 T--TG-CTTTACGGGGATTTCATTAACCGGTT-CTTGGAGAAGTTACGTGAGGAAGTGTA 539
Query 573 CAAGATTTTGCTTCGTCCTGTGGAATATGAAGTTGAAGTTTGGATCTTGGCTTTGAAATC 632
||| ||||||||| ||||| | || || ||| |||| ||| | |||||||||| |||
Sbjct 540 TAAGGTTTTGCTTCATCCTGAGAAAGATAAAGAAGAAGAATGGGTTTTGGCTTTGACATC 599
Query 633 TGCTGTTAAAATGGGGATTTTGCTTAT-GGATTCAGAAATGAGATTTGATTTGACAAGAG 691
||||||||||||||||||| | || | |||||| |||| |||||| ||||||| ||||
Sbjct 600 TGCTGTTAAAATGGGGATTGAGATT-TCGGATTCGGAAACGAGATTCGATTTGAGGAGAG 658
Query 692 ACATTCTTCACATTGTT-TGGAAATGTTCTCTTGATGTTGTGTGGAATGAT-ATGGAA-G 748
| |||||||||| |||| || |||| | || |||| ||| |||||| || |||||| |
Sbjct 659 AGATTCTTCACAATGTTATG-AAATCTGCTTTTGAGGTTATGTGGA-TGGGGATGGAAAG 716
Query 749 AAGAGTTTCTGCTAA-ATGGACTTGATTCTCTTGAGATTTTC-TTGGTGGAAGACGCGAA 806
| ||||||||| ||| | || ||| | | | | || | | | ||| | |||| |||||
Sbjct 717 A-GAGTTTCTGATAAGAGGG-CTTCAATATATCGATAAGTACCTTGC-GAAAGAAGCGAA 773
Query 807 CAA-GTTTAAGTGGAATAGTGATCAATGCAGGTTT-GTGGCAGAGTTTGCGTTTAAGATT 864
| || ||| |||| ||| | |||||| ||||| ||||||| |||||||| | |||
Sbjct 774 -ATCGTGTAAATGGAGTAGCAAACAATGC-GGTTTCGTGGCAGCGTTTGCGTATGGGATC 831
Query 865 TCAG-A-TATCGGAA-AAGAGGCCAAGGAAGTTGCTTGGAAGATCTATCG-AATGGTTAC 920
||| | | | |||| || | | ||||||| |||| |||||||| | | |||||||||
Sbjct 832 GCAGGAGT-T-GGAACAA-ATACAAAGGAAGATGCTAAGAAGATCTTT-GTAATGGTTAC 887
Query 921 AAAGCTGGATAAGTATGTGCAC-AATCCAGCTTTCGAATTTAGCCC-TTTT-CGCAATGA 977
|| |||| |||||||| | | ||||| || || ||| | | | |||| || |||
Sbjct 888 GAATATGGACAAGTATGTTC-CGAATCCGGCCTT-GAAACTCGAACATTTTTCGGT-TGA 944
Query 978 GAATAAATATCTTGGAGTAGA-TGATGTTTGTGACTTAGAAG-AC-A-TTTTGG-ATGCT 1032
||| || |||||||||| || | || |||| || | | || | |||||| | |
Sbjct 945 TAATCAAGATCTTGGAGTGGAATC-TGACCGTGAATT-GTACTACTACTTTTGGCAA-CG 1001
Query 1033 TTATCTCCAGTGGAAATCATGAGAAAGGTTT-CAGTAGGTCAAGTTCCT-A--ATAGGT- 1087
| | ||||| ||||| || |||| ||| || | || |||| | | ||||||
Sbjct 1002 T-A-CTCCAATGGAAGTCTTGAGTTTC-TTTGCAACA--TCTGGTTC-TGATTATAGGTC 1055
Query 1088 TGAGAGAGATAGCTATCACGAGACTTTATGAGTT-ATTTTGTGATCACACTGCTGGGAAA 1146
| ||||||||||| |||| ||||| ||||| || | |||||||||| ||| | |
Sbjct 1056 T-AGAGAGATAGCAATCAAAAGACTCTATGA-TTCACTTTGTGATCATACTTCAAGCCT- 1112
Query 1147 GGG-GATATAAGTAT-TT-CAGAGATTAGAGAAATCCAGCCGTTGCTCATCTCTTGCCTT 1203
| || ||| | || || ||||||||||||| | ||||| ||||| ||| ||||||||
Sbjct 1113 GTTTGAAATA-G-ATGTTGCAGAGATTAGAGATCTTCAGCCATTGCTTATCACTTGCCTT 1170
Query 1204 GCAG-A-GATAGGAATTCCTGAGAGCACGTTTAAGATTCTCTG-TCAGGTGGTGTTCCAT 1260
|| | || |||||| ||||||| || | |||||||| || |||||||||||||||
Sbjct 1171 A-AGGAAGA-AGGAATGCCTGAGAACATATACAAGATTCT-TGGTCAGGTGGTGTTCCAC 1227
Query 1261 GTTTTACATGAGTTGT-CTAGCTACCAAGAGGACAAC-TGGTTTGGTCTATGGGACTACA 1318
||| || ||| | | | |||| || | ||| | ||||| | |||||||||||| |
Sbjct 1228 GTTGCGCAGGAGACATTC-ACCTACGAAAAAGACC-CGTGGTTCGATCTATGGGACTATA 1285
Query 1319 TTGCAACAGAAAGCAAAACAGAGTTCATGAA-GACAGTTTATATCTTCCAGTGCTTAACA 1377
||| ||||||||||| | ||||||| ||| | | ||||||||||||||||| ||||||
Sbjct 1286 TTGGTTCAGAAAGCAAAGCGGAGTTCAAGAAAG-CGGTTTATATCTTCCAGTGTTTAACA 1344
Query 1378 ATGCGGCTCGA-TGATAAAGAGT-TTGTGATTCATGCGATTAA-TAATCTTCTTCCAGAG 1434
|||||||| || | ||||||| | ||||| ||| |||||| || ||||||||||||||||
Sbjct 1345 ATGCGGCTTGAAT-ATAAAGA-TATTGTGGTTCCTGCGAT-AACTAATCTTCTTCCAGAG 1401
Query 1435 ATTCACAGACACCTAAACCCACCAAGAG-ACTTGTTGGTAGATGAAAATT-GCTGGGTCT 1492
||||||||| |||||| |||||||| || | |||||||| ||| || | | |||||||||
Sbjct 1402 ATTCACAGAAACCTAACCCCACCAA-AGGAGTTGTTGGTTGAT-AACAGTAGCTGGGTCT 1459
Query 1493 TGGCGTTTACGGGTGCGTT-CTGTGCAGCAATTCACTTGATAGAGATCTCAAGTCATGCT 1551
|||||||||||||||| || |||| |||||||||||||| ||||| || ||||||| ||
Sbjct 1460 TGGCGTTTACGGGTGC-TTACTGTTCAGCAATTCACTTGCTAGAGGTCACAAGTCACGCG 1518
Query 1552 CAATAC-TTGAAGGAGATTGCATATAAGATGATAGATTCAGTGAGGGAGCTTGTGGGAAG 1610
|| | || |||||||||||| |||||||||||||||| |||| |||||||||| |||
Sbjct 1519 GGATTCGTT-AAGGAGATTGCACATAAGATGATAGATTCTGTGAAAGAGCTTGTGGAAAG 1577
Query 1611 AGGAATGGAAGTTG-AGCTTGTGAGGAGAGCTTTCATAAATATGGAAAGCATTGTGGAGA 1669
|||||||||||||| | ||||||||||||||||||| | || | ||||| ||||||||||
Sbjct 1578 AGGAATGGAAGTTGGA-CTTGTGAGGAGAGCTTTCAGAGATCTTGAAAGTATTGTGGAGA 1636
Query 1670 AACAATATGACTGTTACACT-ACTAGTGACTACAGATTCGTTAAGGGTTTGGTTTGGAAG 1728
|||||| ||||| |||| | ||| | || ||| ||||| ||||||||||| |||||| |
Sbjct 1637 AACAATGGGACTGGTACA-TGACTCGCGAATACCGATTCCTTAAGGGTTTGCTTTGGAGG 1695
Query 1729 CTCTATGCAATCAAAGACATCAGCGTGGAAACTCAGTGTGTGTTGTGGAGAATCAACGTG 1788
||||| || ||||||| ||| | |||||| | ||| |||||||||||||||||| ||
Sbjct 1696 CTCTACGCGATCAAAGGCATGAAAATGGAAAGTAAGTATGTGTTGTGGAGAATCAATGTT 1755
Query 1789 ATTCTGGAAAA---AGTGCAGGAGG-TA--AAAGAGCTCCCAAAGAGTGACCTTGATTGG 1842
| | | || | |||| | | | |||| ||||||||||||||| ||||||||
Sbjct 1756 AATATTGAGAGGTCAGTGGATAAAAATCTTAAAGTGCTCCCAAAGAGTGAGTTTGATTGG 1815
Query 1843 CTGAACCAACCCGAGACTTTAGGCAA-TTGA 1872
||||||| ||| ||| |||| || || ||||
Sbjct 1816 CTGAACCTACCTGAGCCTTT-GGAAAATTGA 1845
> Ahg947388 jgi|Araly1|947388|scaffold_703617.1
Length=1870
Score = 460 bits (249), Expect = 1e-128
Identities = 636/812 (78%), Gaps = 70/812 (9%)
Strand=Plus/Plus
Query 1090 AGAGAGATAGCTATCACGA-GACTTTATGAGTTAT--TTTGTGATCACACTGCTGGGAAA 1146
|||||||| ||||||| || |||| | |||| | | | |||||||||| | || |
Sbjct 1074 AGAGAGATGGCTATCA-GACGACTCGA--AGTTGTGCTCTCTGATCACACTTCAAAGAGA 1130
Query 1147 GGGGATATA-AGTATTTCAGAGATTAGAGAAATCCAGCCGTTGCTCATCTCTTGCCTT-- 1203
| ||| ||| | | |||||||||| |||||| ||||||| ||||| | ||||||||||
Sbjct 1131 GTGGAAATAGACT-TTTCAGAGATGAGAGAACTCCAGCCATTGCTTAACTCTTGCCTTCG 1189
Query 1204 GCAGAGATAGGAATTC-CTGAGAGCACGTTTAAGATTC-TCTGTCAGGTGGTG-TTCCAT 1260
||| ||| ||||| || | || |||| ||| || | || | || |||||||| | ||
Sbjct 1190 GCA-AGA-AGGAA-TCACAGACAGCATGTTCAA-AGTCTTAGGTGAGGTGGTGAGT-CAC 1244
Query 1261 GTTTTACATGAG-T-TGTCTAGCTACCAAGA-G-GACAACTGGTTTGGTCTATGGGACTA 1316
||| ||||| | | || | | ||||||| | || | |||| || | || | ||||
Sbjct 1245 GTTGCGTATGAGATCT-TCAAAC-ACCAAGATGTTAC-A-TGGTATGCTTTACGCAACTA 1300
Query 1317 CATTGCAACAGAAAGCAAAACAGAGTTCATGAAGA-CAGTTTATATCTTCCAGTGCTTAA 1375
|||||| | | || ||||||||||||| | ||| | ||||||||||||||||||||||
Sbjct 1301 TATTGCATC-G--AGTAAAACAGAGTTCAAG-AGAGCGGTTTATATCTTCCAGTGCTTAA 1356
Query 1376 CAATGCGGCTCGATGATAAAGAGTTTGTGATTCATGCGATT-AATAATCTTCTTCCAGAG 1434
|||||| ||| || || | |||||| | |||| || |||| || |||||| ||||||
Sbjct 1357 CAATGCCGCTTGAAAATGAGGAGTTTCTCATTCCTGTGATTGAA-GTTCTTCTCCCAGAG 1415
Query 1435 ATTCACAG-AC-A-CCTAAAC-CCACCAAGAGACTTGTTGGTAGATGAA-AATTGCTGGG 1489
| | | || || | || ||| ||||||| ||| |||||||||||| || | ||||||||
Sbjct 1416 A-T-A-AGTACAAGGCT-AACTCCACCAACAGAGTTGTTGGTAGAT-AACAGTTGCTGGG 1470
Query 1490 TCTTGGCGTTTACGGGT-GCGTTCTGTGCAGCAATTCACTTGATAGAGATCTCAAGTCAT 1548
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1471 TCTTGGCGTTTACGGGTGGC-TTCTGTGCAGCAATTCACTTGATAGAGATCTCAAGTCAC 1529
Query 1549 GCTCAATACTTGAAGGAGATTGCATATAAGATGATAGATTCAGTGAGGGAGCTTGTGGGA 1608
||| ||| ||| |||||||||||| ||||||||||||| |||||||| ||||||||| |
Sbjct 1530 GCTGAATCCTTAAAGGAGATTGCACATAAGATGATAGACTCAGTGAGAAAGCTTGTGG-A 1588
Query 1609 A-GAGGAATGGAAGTTG-AGCTTGTGAGGAGAGCTTTCATAAATATGGAAAGCATTGTGG 1666
| ||||||||||||||| | ||||||||||||||||||| | || ||||||||||||||
Sbjct 1589 ACGAGGAATGGAAGTTGGA-CTTGTGAGGAGAGCTTTCAGAGATGTGGAAAGCATTGTGA 1647
Query 1667 AGAAACAATATG--ACTGTTAC-ACTACTAGTGACTACAGATTCGTTAAGGGTTTGGTTT 1723
||||||||| || | || || | ||| || || |||| ||| ||||||||| || |||
Sbjct 1648 AGAAACAAT-TGCGA-TGGTATGA-TACAAGCGAGTACAAATTGGTTAAGGGTCTGCTTT 1704
Query 1724 GGA-AGCTCTATGCAATCAAAGACATCAGCGTGG-AAACTCAG-TGTGTGTTGTGGAGAA 1780
||| | |||||||||||||||| ||| | ||| ||| | | | ||||||||||||||
Sbjct 1705 GGAGA-CTCTATGCAATCAAAGGCATGAAA-TGGGAAAGTAAAAT-TGTGTTGTGGAGAA 1761
Query 1781 TCAACGTGATTCTGGAAA-A--AGT-GCAGGA---GGTAAAAGAGCTCCCAAAGAGTGAC 1833
||||||||||| | || | | ||| | | || ||| |||||||| ||| ||| |||
Sbjct 1762 TCAACGTGATTGTTGAGAGAGGAGTTG-ATGAAATGGTTAAAGAGCTGCCAGAGAATGAG 1820
Query 1834 CTTGATTGGCTGAACCAACCCGAGACTTTAGG 1865
||||||||||||||| || ||| ||| |||
Sbjct 1821 TTTGATTGGCTGAACCTACGTGAGCCTT-AGG 1851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75342504610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5