BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37450.1
Length=2808
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493720 jgi|Araly1|493720|fgenesh2_kg.7__3153__AT5G37450.1 2292 0.0
Ahg895520 jgi|Araly1|895520|Al_scaffold_0006_3516 69.4 1e-10
Ahg490098 jgi|Araly1|490098|fgenesh2_kg.6__3232__AT4G04510.1 65.8 2e-09
> Ahg493720 jgi|Araly1|493720|fgenesh2_kg.7__3153__AT5G37450.1
Length=2727
Score = 2292 bits (1241), Expect = 0.0
Identities = 1434/1529 (94%), Gaps = 6/1529 (0%)
Strand=Plus/Plus
Query 1 ATGAAAGAGATGATGGGTGTAGTTGGAATCATTCTGGT-TGTGTCTTCTTGTTGCTTGTC 59
||||||||||||||| ||||||||||| |||||||||| | ||||||||| |||||||||
Sbjct 1 ATGAAAGAGATGATGCGTGTAGTTGGAGTCATTCTGGTCT-TGTCTTCTTCTTGCTTGTC 59
Query 60 TTTGCTGGATGCCCAAGAGATTACTCATCCCACTGATGTTAGTGCTCTGCAGTATGTTCA 119
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 60 TTTGCTGGATGCTCAAGAGATTACTCATCCGACTGATGTTAGTGCTCTGCAGTATGTTCA 119
Query 120 CCGCAAACTAAAGGACCCTCTGAATCATCTTCAAGACTGGAAAAAGACGGATCCATGCGC 179
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CCGCAAACTTAAGGACCCTCTGAATCATCTTCAAGACTGGAAAAAGACGGATCCATGCGC 179
Query 180 CTCTAACTGGACCGGTGTCATCTGCATCCCTGATCCTTCTGATGGCTTTCTTCATGTTAA 239
|||||| ||||||||||| |||||||||||||||||| | ||||||||||||||||||||
Sbjct 180 CTCTAATTGGACCGGTGTTATCTGCATCCCTGATCCTACAGATGGCTTTCTTCATGTTAA 239
Query 240 AGAATTGCTATTAAGTGGAAATCAACTGACAGGATCTTTGCCTCAAGAACTCGGTTCTCT 299
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 AGAGTTGCTATTAAGTGGAAATCAACTGACAGGATCTTTGCCTCAAGAACTTGGTTCTCT 299
Query 300 TTCCAATCTCTTAATCCTTCAGATAGATTACAATGAAATTAGCGGAAAACTTCCAACGTC 359
|||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 300 TTCCAATCTCCGAATCCTTCAGATAGACTACAATGATATTAGCGGAAAACTTCCAACGTC 359
Query 360 CTTGGCAAATTTGAAAAAACTGAAGCATTTTCACATGAACAATAACTCAATCACGGGTCA 419
||||||||| ||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 360 GTTGGCAAATCTGAAAAACCTGAAACATTTTCACATGAACAACAACTCAATCACGGGTCA 419
Query 420 GATTCCGCCCGAGTACTCTACCTTAACCAATGTTCTGCACTTCTTGATGGACAATAACAA 479
|||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 420 GATTCCCCCCGAGTACTCTTCCTTAACCAGTGTTCTGCACTTCTTGATGGACAATAACAA 479
Query 480 GCTAACTGGTAATCTTCCACCGGAGCTCGCTCAGATGCCAAGCTTGAGAATTCTACAATT 539
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 480 GCTAACTGGAAATCTTCCACCGGAGCTCTCTCAGATGCCAAGCTTGAGAATTCTACAATT 539
Query 540 GGACGGTAGCAACTTTGATGGCACAGAGATCCCATCTTCTTACGGATCGATACCAAATCT 599
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GGACGGTAACAACTTCGATGGCACAGAGATCCCATCTTCTTACGGATCGATACCAAATCT 599
Query 600 CGTCAAATTGAGTCTCAGAAACTGCAACCTAGAAGGACCAATTCCTGATTTGAGCAAATC 659
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 600 CGTCAAACTGAGTCTCAGAAACTGCAACCTACAAGGACCAATTCCTGATTTGAGCAAAGC 659
Query 660 ACTGGTTCTCTATTACTTAGATATTTCCTCCAACAAACTCACAGGAGAAATTCCCAAGAA 719
|| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 ACCGGTACTCTATTACTTAGATATTTCCTCCAACAAACTCACTGGAGAAATTCCCAAGAA 719
Query 720 CAAGTTCTCTGCAAACATCACAACTATAAACTTGTACAACAATTTGCTCAGCGGATCCAT 779
||||||||||||||||||||||||||| || |||||||||||| |||||| ||||||||
Sbjct 720 CAAGTTCTCTGCAAACATCACAACTATTAATTTGTACAACAATATGCTCAATGGATCCAT 779
Query 780 TCCTTCTAATTTTTCAGGCCTTCCACGGTTACAGAGACTGCAAGTGCAGAACAACAACTT 839
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CCCTACAAATTTTTCAGGCCTTCCACGGTTACAGAGACTGCAAGTGCAGAACAACAACTT 839
Query 840 GAGTGGGGAGATTCCTGTGATATGGGAAAATAGGA-TCTTGAAGGCAGAGGAAAAACTTA 898
|||||||||||||||||||||||||| ||||||| | || |||||||||||||||||||
Sbjct 840 AAGTGGGGAGATTCCTGTGATATGGGACAATAGGAGTTTT-AAGGCAGAGGAAAAACTTA 898
Query 899 TCTTGGACTTGAGGAACAACATGTTTTCAAATGTGTCAAGTGTTCTTCTAAACCCTCCCT 958
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 899 TCTTGGACTTGAGGAACAACTTGTTTTCAAATGTGTCAAGCGTTCTTCTAAACCCTCCCT 958
Query 959 CCAATGTCACAGTCAAGCTTTACGGAAACCCGGTTTGTGCAAATGTTAATGCGGGAAAGT 1018
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 959 CCAATGTCACAGTCAAGCTTAACGGAAACCCGGTTTGTGCAAATGTTAATGCGGGTAAGT 1018
Query 1019 TAGCTGATCTCTGTGGTATCTCAACGTTAGAAGTGGAATCTCCCGCAACTTCTTCGGAAA 1078
|||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1019 TAGCTGATCTATGTGGCGTCTCAACGTTAGAAGTGGAATCCCCCGCAACTTCTTCGGAAA 1078
Query 1079 CCATCTCGACGGGAGACTGCAAACGTCAGTCGTGCCCCGTAAGCGAAAACTATGACTACG 1138
|| | | || |||||||||||||| || || |||||||||||||||||||| |||||||
Sbjct 1079 ACACCACCACAGGAGACTGCAAACGCCAATCTTGCCCCGTAAGCGAAAACTACGACTACG 1138
Query 1139 TGATTGGGTCTCCAGTTGCATGTTTCTGCGCTGCACCACTTGGCATTGATCTTCGGCTTA 1198
|||||||| |||||||||||||||| || |||||||||||||| ||||| ||||| ||||
Sbjct 1139 TGATTGGGGCTCCAGTTGCATGTTTTTGTGCTGCACCACTTGGTATTGAACTTCGTCTTA 1198
Query 1199 GGAGTCCAAGTTTCTCGGACTTTCGACCTTACAAAGTCTCCTACATGCTCGATGTAGCAT 1258
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1199 GGAGTCCAAGTTTCTCTGACTTTAGACCTTACAAAGTCTCCTACATGCTCGATGTGGCAT 1258
Query 1259 CCCCGAAAAATCTCGGGATAAACCCGTATCAGATATCTATTGA-TACATTTGCATGGCAG 1317
||||||||||||||||||||||| ||||||||||||||||||| | |||| ||||||||
Sbjct 1259 CCCCGAAAAATCTCGGGATAAACGCGTATCAGATATCTATTGAAT-CATTCGCATGGCAA 1317
Query 1318 TCGGGTCCAAGGCTATTCATGAACATGAAGATTTTCCCTGAGTACAGTGAATTAAACAGT 1377
||||||||||| |||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct 1318 TCGGGTCCAAGACTATCCATGAACATGAAGATTTTTCCGGAGTACAGTGAATTAAACAGT 1377
Query 1378 AAATTCAACAGCACAGAGGTTCAACGTATTGTGGACTTCTTTGCAACTTTCACTCTGAAT 1437
||||| |||| ||||||||||||||||||||||||||||||||||||||| | |||| ||
Sbjct 1378 AAATTTAACACCACAGAGGTTCAACGTATTGTGGACTTCTTTGCAACTTTTAGTCTGGAT 1437
Query 1438 ACTGATGATTCTCTTGGCCCTTATGAGATTATTAGTATCAACACTGGTGCTTACAAAGAC 1497
|| |||||||| ||||||||||| |||||||||||||||||||| |||||||||| ||||
Sbjct 1438 ACCGATGATTCCCTTGGCCCTTACGAGATTATTAGTATCAACACCGGTGCTTACAGAGAC 1497
Query 1498 GGTAATACACATATCTTCTACTCATCTTT 1526
||||||||| |||||||||||||||||||
Sbjct 1498 GGTAATACATATATCTTCTACTCATCTTT 1526
Score = 1784 bits (966), Expect = 0.0
Identities = 1120/1195 (94%), Gaps = 8/1195 (1%)
Strand=Plus/Plus
Query 1618 GTTGGAATCATTATAGGAGCCATTGCTTTCTTCCTTGTATTGTCCTCTCTAGCATTGGTC 1677
|||||||||||| |||||||||||||||| ||| |||||||||||||| |||||||| ||
Sbjct 1537 GTTGGAATCATTTTAGGAGCCATTGCTTTGTTCATTGTATTGTCCTCTGTAGCATTGCTC 1596
Query 1678 TTCTTCATCAAGAGAAGCAAACGAAAGAGAAAAACTAGGGAAGTCGACATGGAACAAGAA 1737
| ||| |||||||||||||||| |||||||||||||| |||||| |||||||||||||||
Sbjct 1597 TGCTTAATCAAGAGAAGCAAACAAAAGAGAAAAACTAAGGAAGTTGACATGGAACAAGAA 1656
Query 1738 CACCC-ACTTCCAAAACCTCCAATGAACATGGAGAGCGTGAAGGGTTACAATTTCACGGA 1796
||||| | |||||||| ||||||| ||||||||||||||||||||||||| | |||||||
Sbjct 1657 CACCCTA-TTCCAAAATCTCCAATTAACATGGAGAGCGTGAAGGGTTACACTCTCACGGA 1715
Query 1797 ACTTGATTCAGCAACAAGCAGTTTCAGTGATCTCTCTCAGATTGGTAGAGGTGGCTATGG 1856
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1716 ACTTGATTCAGCAACAAGCAGTTTCAGTGATCTCTCCCAGATTGGTAGAGGAGGCTATGG 1775
Query 1857 GAAGGTCTACAAAGGCCATTTACCAGGTGGTCTGGTTGTAGCTGTCAAACGTGCAGAGCA 1916
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1776 GAAGGTCTACAAAGGCCATTTACCAGGTGGTCTAGTTGTAGCGGTCAAACGTGCAGAGCA 1835
Query 1917 AGGGTCTCTGCAGGGCCAAAAAGAGTTCTTCACCGAGATCGAGTTGCTTTCCCGGCTACA 1976
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1836 AGGGTCCCTGCAGGGCCAAAAAGAGTTCTTCACCGAGATCGAGTTGCTTTCCCGGCTACA 1895
Query 1977 TCACCGTAACCTTGTTTCTTTGCTTGGCTACTGTGATCAGAAAGGAGAACAGATGTTGGT 2036
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1896 TCACCGAAACCTTGTTTCTTTGCTTGGCTACTGTGATCAGAAAGGAGAACAAATGTTGGT 1955
Query 2037 ATATGAGTACATGCCCAACGGTTCTCTTC-AGGACGCACTCTCTGCGAGGTTTAGACAAC 2095
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1956 GTATGAGTACATGCCCAACGGTTCTCTTCTAG-ACGCACTCTCTGCGAGGTTTAGACAAC 2014
Query 2096 CACTGAGTTTGGCGCTGAGACTGAGAATAGCGCTCGGGTCTGCGAGAGGGATTCTGTATC 2155
| | |||||||||||||||||| |||||||||||||||||||||| |||||| ||||||
Sbjct 2015 CGTTAAGTTTGGCGCTGAGACTGGGAATAGCGCTCGGGTCTGCGAGGGGGATTTTGTATC 2074
Query 2156 TGCACACAGAAGCTGATCCACCAATCATCCATCGAGACATCAAACCAAGCAACATTCTTC 2215
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 2075 TGCACACAGAAGCTGATCCACCAATCATCCATCGAGATATAAAACCAAGCAACATTCTTC 2134
Query 2216 TAGACAGCAAGATGAACCCTAAAGTTGCAGACTTTGGGATCTCAAAGCTCATAGCACTAG 2275
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2135 TAGACAGCAAGATGAATCCTAAAGTTGCAGATTTTGGGATCTCAAAGCTCATAGCACTAG 2194
Query 2276 ATGGTGGAGGAGTGCAAAGGGATCACGTAACTACCATCGTCAAAGGCACTCCTGGATATG 2335
||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 2195 ATGGTGGTGGAGTACAAAGGGATCATGTAACTACCATCGTCAAAGGCACCCCTGGATATG 2254
Query 2336 TGGATCCAGAGTATTACTTGAGCCACAGGCTAACAGAAAAGAGTGACGTATACAGCCTCG 2395
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2255 TGGATCCAGAGTACTACTTGAGCCACAGGCTAACAGAGAAGAGTGACGTATACAGCCTCG 2314
Query 2396 GCATTGTCTTTCTCGAAATTCTCACAGGAATGCGCCCAATCTCGCACGGAAGAAACATCG 2455
||||||| ||||| |||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 2315 GCATTGTATTTCTTGAAATTCTTACAGGAATGCGCCCAATATCACACGGAAGAAACATCG 2374
Query 2456 TGCGGGAGGTGAATGAAGCATGCGATGCTGGGATGATGATGTCAGTGATAGACAGGAGCA 2515
||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 2375 TGCGGGAGGTGAATGAAGCGTGCGAAGCTGGGATGATGATGTCGGTGATAGACAGGAGCA 2434
Query 2516 TGGGGCAGTACTCTGAGGAATGCGTCAAGAGATTCATGGAACTAGCCATCAGATGTTGTC 2575
|||||||||||||||||||||| || ||||| ||||||||| ||||||| ||||||||||
Sbjct 2435 TGGGGCAGTACTCTGAGGAATGTGTGAAGAGGTTCATGGAATTAGCCATTAGATGTTGTC 2494
Query 2576 AGGACAACCCAGAAGCGCGTCCGTGGATGCTGGAAATAGTGAGGGAGCTGGAGAATATCT 2635
||||||| |||||||| ||||| ||||||||||||| ||||||||||||||||| ||||
Sbjct 2495 AGGACAATCCAGAAGCACGTCCACGGATGCTGGAAATCGTGAGGGAGCTGGAGAACATCT 2554
Query 2636 ATGGGCTGATTCC-AAAGGAAGAGAAGCCATATTCAAGCCCTTCAGTCCAATCATCTGCT 2694
| | | ||||||| |||| ||||||||||||||||||||||||||||||| || ||| ||
Sbjct 2555 ACGAGATGATTCCGAAAG-AAGAGAAGCCATATTCAAGCCCTTCAGTCCAGTCCTCTACT 2613
Query 2695 TCAGGAATGTCAGGCTTCGCTGTTGCTTCTC-CAAGAAGCAGTTATACTACCTTCTCTGA 2753
|||||||||||||||||||||| |||||| | ||||| ||||||||||||||||||| ||
Sbjct 2614 TCAGGAATGTCAGGCTTCGCTGGTGCTTC-CGCAAGAGGCAGTTATACTACCTTCTCCGA 2672
Query 2754 ATTCACAGCTAACCAACTCGTCAGCGGAGTCATTCCCTCCATCGCACCGCGCTAA 2808
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2673 ATTCACAGGTAACCAACTCGTCAGCGGAGTCATTCCCTCCATCGCACCGCGCTAA 2727
> Ahg895520 jgi|Araly1|895520|Al_scaffold_0006_3516
Length=1977
Score = 69.4 bits (37), Expect = 1e-10
Identities = 50/56 (89%), Gaps = 2/56 (4%)
Strand=Plus/Plus
Query 2201 CAAGCAACATTCTTCTAGACAGC-AAGATGAACCCTAAAGTTGCAGACTTTGGGAT 2255
||||||| || ||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 1403 CAAGCAATATCCTTTTAGAC-GCGGAGATGAACCCTAAAGTTGCAGACTTTGGGAT 1457
> Ahg490098 jgi|Araly1|490098|fgenesh2_kg.6__3232__AT4G04510.1
Length=1985
Score = 65.8 bits (35), Expect = 2e-09
Identities = 58/69 (84%), Gaps = 2/69 (3%)
Strand=Plus/Plus
Query 2188 CGAGACATCAAACCAAGCAACATTCTTCTAGACAGCA-AGATGAACCCTAAAGTTGCAGA 2246
|||||| | || ||||||| || ||| |||| ||| | ||||||||||||||||||||
Sbjct 1387 CGAGACTTGAAGGCAAGCAATATCCTTTTAGA-TGCATATATGAACCCTAAAGTTGCAGA 1445
Query 2247 CTTTGGGAT 2255
|||||||||
Sbjct 1446 CTTTGGGAT 1454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105967061590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5