BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37475.1
Length=1141
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493723 jgi|Araly1|493723|fgenesh2_kg.7__3156__AT5G37475.1 1578 0.0
> Ahg493723 jgi|Araly1|493723|fgenesh2_kg.7__3156__AT5G37475.1
Length=1037
Score = 1578 bits (854), Expect = 0.0
Identities = 982/1042 (94%), Gaps = 15/1042 (1%)
Strand=Plus/Plus
Query 1 AAGAGAAAAACCTAAAATCCATCTTCGTTGTCGTTTCGTCTGCTTC-ACATCGGAAAG-C 58
||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1 AAGAGAAAACCCTAAAATCCATCTTCGTTGTCGTTCCGTCTGCTTCAACATCGGAAAGTT 60
Query 59 TACATCtttttcgttttttGTGGTGGCGATTTCTATTCTCCGGCTGAAACCTACCTTCAG 118
| || |||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCACCTTTTTCG-TTTTCGTGGTGGCGATTTCTATTCTCCGGCTGAAACCTACCTTCAG 119
Query 119 GATTCAGCCTTTCTCAGGTTTTCAGTTGGATTCAGATAGCAGCTTGTACTTCTTCTAGAT 178
||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 120 GATTCAGCCTTTCTCTGGTTTTCAGTTGGATTCAGATAGCAGCTCATACTTGTTCTAGAT 179
Query 179 AATCGGCGACACATATGGATGATTGGGAGGCCGAGGACTTTCAACCACTTCCCT-CAAAA 237
| |||| ||| |||||||||| |||||||||||||| |||||||||||| ||| |||||
Sbjct 180 ACTCGGTAACAAATATGGATGACTGGGAGGCCGAGGATTTTCAACCACTT-CCTGCAAAA 238
Query 238 GTTGAACTGAAAAGTAACTGGGATGATGAGGATGTGGATGAGAATGATATCAAGGACTCG 297
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GTTGAACTGAAAAGTAATTGGGATGATGAGGATGTGGATGAGAATGATATCAAGGACTCG 298
Query 298 TGGGAGGAGGAAGATGTATCTGCTCCGCCACCTATAGTAAAGCCTGCTTCTGAGAAGGCT 357
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 299 TGGGAGGAGGAAGATGTATCTGCTCCGCCACCTGTAGTAAAGCCTGCTTCTGAGAAGGCT 358
Query 358 CCAAAGAAACCAGCAGTAAAAGCTGTTGAAAAGAAGGTTAAAACTGTTGAAGCTCCGAAA 417
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 359 CCAAAGAAAGCAGCAGTAAAAGCTGTTGAAAAGAAGGTTAAAACTGTTGAAGCTCCAAAA 418
Query 418 GGAACATCAAGGGAAGAACCTCTAGATCCTATTGCTGAGAAACTTCGCATGCAGAGGCTT 477
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGATCATCAAGGGAAGAACCTCTAGATCCTATTGCTGAGAAACTTCGCATGCAGAGGCTC 478
Query 478 GTAGAGGAAGCTGATTACCAATCAACTGCTGAACTCTTTGGAGTAAAGACTGAAGAGAAA 537
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 479 GTGGAGGAAGCTGATTACCAGGCAACTGCTGAACTCTTTGGAGTAAAGACTGAAGAGAAA 538
Query 538 AGCGTCGATATGTTAATTCCGAAGTCTGAAAGCGATTTCTTGGATTATGCTGAGTTGATA 597
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 539 AGCGTCGATATGTTAATTCCTAAGTCTGAAAGCGATTTCTTGGATTATGCTGAGTTGATA 598
Query 598 TCTCAGAGACTTGTACCATTTGAGAAAAGCTTTCACTATATCGGGCTACTCAAAGCAGTG 657
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 599 TCTCAGAGACTTGTACCATTTGAGAAAAGTTTTCACTATATTGGGCTACTCAAAGCAGTG 658
Query 658 ATGAGACTTTCTGTGGCTAATATGAAAGCAGCAGATGTTAAAGACGTTGCTTCGTCCATT 717
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATGAGACTTTCTGTGGCGAATATGAAAGCAGCAGATGTTAAAGACGTTGCTTCGTCCATT 718
Query 718 ACAGCTATAGCAAATGAAAAATTGAAGGCGGAGAAAGAAGCTGCTGCTGGCAAAAAGAAG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ACAGCTATAGCAAATGAAAAATTGAAGGCGGAGAAAGAAGCTGCTGCTGGCAAAAAGAAG 778
Query 778 TCAGGTAAGAAGAAACAACTTCATGTTGATAAGCCTGATGATGATCTTGTTTCGGGTCCT 837
|||||||||||||| ||||||||||| ||||||||||| |||||||||||| |||||||
Sbjct 779 TCAGGTAAGAAGAAGCAACTTCATGTGGATAAGCCTGACGATGATCTTGTTGGGGGTCCT 838
Query 838 TATGATGCCATGGACGATGATGATTTCATGTGAGAAAATGGCAATTTTGGAGATTGCATT 897
|||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 839 TATGATGCTATGGATGATGATGATTTCATGTGAGAAAATGGCA-TTTTGGAGATTGCATT 897
Query 898 TTACCTCCTATAGGATTGTAACTGAGAAGAGGTTTAAATCGTCGGCGGTTTTTTGTTTTG 957
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 898 TCACCTCCTATAGGATTGTAACTGAGAAGAGGTTTAAATCTTCGGCGGTTTTTTGTTTAG 957
Query 958 T-ATA--CTGAATTGCAAAAGTGTTT-TTCTTCT-G-TTTTCTTTGCTCGGTTTGATTT- 1010
| ||| ||||||| ||| |||||| || |||| | |||||| ||||| |||||||||
Sbjct 958 TTATATACTGAATTCCAACAGTGTTCCTT-TTCTCGGTTTTCTGTGCTCAGTTTGATTTG 1016
Query 1011 AAAAATTTGTGTAATAAGATTT 1032
||||||| |||||| |||||||
Sbjct 1017 AAAAATT-GTGTAACAAGATTT 1037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42545175372
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5