BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37478.1
Length=727
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330283 jgi|Araly1|330283|fgenesh1_pm.C_scaffold_7002510 477 5e-134
> Ahg330283 jgi|Araly1|330283|fgenesh1_pm.C_scaffold_7002510
Length=291
Score = 477 bits (258), Expect = 5e-134
Identities = 281/292 (96%), Gaps = 2/292 (1%)
Strand=Plus/Plus
Query 247 ATGTTCAACTATTCGGTTGCAACTAATTATTACATCCA-GAAACTTCAGAAAAAACAAGA 305
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 1 ATGTTCAACTATTCGGTTGCAACTAATTATTATAT-CATGAAACTTCAGAAAAAACAAGA 59
Query 306 AGAGAGGTTGCAAAAGATGATAGAAGAGGAAGAGATTCGCATGTTGAGGAAGGAAATGGT 365
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 60 AGAAAGGTTGCAAAAGATGATAGAAGAGGAAGAGATTCGTATGTTGAGGAAGGAAATGGT 119
Query 366 TCCAAAAGCTCAATTGATGCCTTTCTTCGACAGACCTTTTCTCCCACAAAGATCGAGCAG 425
||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct 120 TCCAAAAGCTCAATTGATGCCTTTCTTCGACCGACCTTTCCTCCCACAGAGATCGAGCAG 179
Query 426 ACCATTGACGATGCCAAAAGAACCAAGCTTTGGAAACGTAAACAGCACTTGTTGGACTTG 485
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 180 ACCATTGACGATGCCAAAGGAACCAAGCTTTGGAAACGTACACAGCACTTGTTGGACTTG 239
Query 486 TGTTTTCAACAACCAACACTATCTTTACCATATTAACCATGCTCATGCTTAA 537
||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 240 TGTTTTCAACAACCAACACTACCTTTACCATATTAACCATGCTCATGCTTAA 291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26762287734
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5