BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G37480.1

Length=814
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg891351 jgi|Araly1|891351|Al_scaffold_0007_3337                    440    7e-123


> Ahg891351 jgi|Araly1|891351|Al_scaffold_0007_3337
Length=519

 Score =  440 bits (238),  Expect = 7e-123
 Identities = 400/474 (84%), Gaps = 27/474 (6%)
 Strand=Plus/Plus

Query  219  TTTCTGGAGGTTTTTTGTGAAGTTTCTGGTAAAGACTACCGATTCACAACAGGGACAAAG  278
            |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||||||
Sbjct  49   TTTCTGGAAGTTTTTTGTGAAGTTTCTGGTAAGGAATACCGATTCACAACTGGTACAAAG  108

Query  279  GCGGAGTTTGCTGTCTCTGTGATCAACAGGAAACTTGGTTCGTTGAAACCTCGAGTGA-T  337
            ||| | ||||||||||||||||| |||| ||||||||||||||| |||||| |||| | |
Sbjct  109  GCGAAATTTGCTGTCTCTGTGATTAACAAGAAACTTGGTTCGTTAAAACCTAGAGT-AGT  167

Query  338  -TTACATCGAAGCAGCAAAGGAAGGTGAAGAGCCTATTAGTTTTGGTGATAATGCTAGTC  396
             || ||| ||||||| |||||| ||||||||||| || |||||||||||| ||||| |||
Sbjct  168  GTT-CATTGAAGCAGTAAAGGATGGTGAAGAGCCAATCAGTTTTGGTGATGATGCTTGTC  226

Query  397  TTCTGAATTATGGACTTGGTTGGAAGTTGAAGACAGTTGTTGATGCTGATCTACCTGGAA  456
            || | ||||| |||| ||||||||||||||||||||| |||||| ||||| | |||||||
Sbjct  227  TTGTCAATTACGGACATGGTTGGAAGTTGAAGACAGTGGTTGATTCTGATTTTCCTGGAA  286

Query  457  CGGAGAAAAACAATCGACAACAGCGGTTTTCTTCTGTATTTTCGACGGG-TT---TT---  509
            | ||||||||||||| ||||||||  ||| |||||||| | || | ||| ||   ||   
Sbjct  287  CTGAGAAAAACAATCTACAACAGCACTTTCCTTCTGTAATATCAATGGGTTTCGATTCCA  346

Query  510  --G---CAAA-T--------GATTCAACACCAGAAATCGGAGAGCAAAGTCTGAAATACA  555
              |   |||| |        ||||| | ||||||||| ||||| |||||||| |||||||
Sbjct  347  AAGATTCAAAGTACACAAAGGATTCGAGACCAGAAATTGGAGATCAAAGTCTAAAATACA  406

Query  556  TTGGGAGGATATTTTTTGCATTTGTTTTGATGTTTATTCTTGGTGGCCTCTTCACAGTGG  615
            |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  407  TTGGAAGAATATTTTTTGCATTTGTTTTGATGTTTATTCTTGGTGGCCTCTTCACAGTGG  466

Query  616  CTCTTGAGAACCTTCCTAGA-TTAATATTGCTCTTTAACAACTCTTTCGTGTAA  668
            |||||||||||||||| ||| ||| ||||||||||||| ||||| | | |||||
Sbjct  467  CTCTTGAGAACCTTCCCAGACTTA-TATTGCTCTTTAAAAACTCGTCCATGTAA  519



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30078981513


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5