BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37490.1
Length=1674
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493725 jgi|Araly1|493725|fgenesh2_kg.7__3158__AT5G37490.1 1936 0.0
> Ahg493725 jgi|Araly1|493725|fgenesh2_kg.7__3158__AT5G37490.1
Length=1642
Score = 1936 bits (1048), Expect = 0.0
Identities = 1306/1430 (91%), Gaps = 19/1430 (1%)
Strand=Plus/Plus
Query 262 AAAACATGGGTTTTTTATGGAGAACGAG---A--T----CTAACGAGAAGAAGATAACTC 312
|||| ||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct 215 AAAAAATGGGTTTTTTATGGAGAACGAGACTACGTGGAGCTAACGAGAAGAAGATAACTC 274
Query 313 CGGTTTTGAGTTGGCCGGAATCAGAACCGGAGTCAGAGATAACAATTCCACCGGAGTTTC 372
|||| | || |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 275 CGGTAATAAGCTGGCCGGAATCAGAACCGGAGTCAGAGATAACAATTCCACCGGAATTTC 334
Query 373 AATGTCCAATCTCGATCGATCTAATGAAAGATCCAGTAATAATCTCAACAGGCATTACTT 432
||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 335 AATGTCCGATCTCAATCGATCTAATGAAAGATCCGGTAATAATCTCAACAGGCATTACTT 394
Query 433 ACGACCGCGTAAGCATCGAAACATGGATCAATTCAGGCAACAAAACATGTCCAGTCACGA 492
||||||||| |||||||||||||||||||| ||| || ||||||||||||||||||||||
Sbjct 395 ACGACCGCGAAAGCATCGAAACATGGATCAGTTCCGGGAACAAAACATGTCCAGTCACGA 454
Query 493 ACACTGTCTTAACCACGTTCGATCAAATCCCAAACCACACGATTCGTAAGATGATTCAAG 552
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 455 ACACTGTCTTAACCACGTTCGATCAAATCCCGAACCACACGATACGTAAGATGATTCAAG 514
Query 553 GATGGTGCGTGGAGAAAGGATCGCCGTTGATTCAACGTATTCCGACGCCACGTGTCCCTT 612
|||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 515 GATGGTGCGTGGAGAAAGGATCACCGTTGATTCAACGTATCCCAACGCCACGTGTCCCTT 574
Query 613 TAATGCCATGTGAGGTCTACGAGATTAGTAGAAAATTATCGTCTGCGACGCGGCGTGGGG 672
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 575 TAATGCCATGTGAGGTCTACGAGATTAGAAGAAAATTATCCTCTGCGACGCGGCGTGGGG 634
Query 673 ATTACGAGAAATGTGGGGTGATTATTGAGAAGATTAAGAAGTTAGGGGATGAGAGTGAGA 732
|||||||||| ||||||| |||||||| |||||||||||| |||||||| ||||||||||
Sbjct 635 ATTACGAGAAGTGTGGGGAGATTATTGCGAAGATTAAGAAATTAGGGGACGAGAGTGAGA 694
Query 733 AAAATCGAAAGTGTGTTAATGAAAACAGCGTCGGATGGGTTCTTTGTGATTGTTTCGACA 792
||||||| ||||||||||| |||||| | ||||||| |||||||||||||||||||| |
Sbjct 695 AAAATCGGAAGTGTGTTAACGAAAACGGTGTCGGATTTGTTCTTTGTGATTGTTTCGAGA 754
Query 793 AGTTCTCGGGAGATGAGAAATTAACGTTTATGTTGAATGAGATTTTGTCTTTGCTGACGT 852
|||||||||||||||||||||||||| |||||||||| |||||||||||| |||||| ||
Sbjct 755 AGTTCTCGGGAGATGAGAAATTAACGATTATGTTGAAGGAGATTTTGTCTCTGCTGATGT 814
Query 853 GGATGTTTCCGATTGGTTTAGAGGGTATTTCGAAACTCGCGTCTGCGACAT-CATTTCGT 911
||||| |||||||||| | ||||||||||||||||||||||||||| | | | |||| |
Sbjct 815 GGATGATTCCGATTGGGTCGGAGGGTATTTCGAAACTCGCGTCTGCGTC-TGCGTTTCAT 873
Query 912 TGCGTGGCGGGTTTGTTGAAGAGTACGGATGATTCCGTTCGTCAAAACGCCGCGTTTATT 971
||||| |||||||||||||||||||||| ||| |||||||||||||||| |||||| ||
Sbjct 874 TGCGTTGCGGGTTTGTTGAAGAGTACGGGCGATACCGTTCGTCAAAACGCTGCGTTT-TT 932
Query 972 -ATGAAGGAGATTCTCTCATTAGACGAAACGCGAGTTCACTCGTTTGCGGTTGAGAACGG 1030
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 933 GATGAAGGAGATTCTCTCATTAGACGAAACGCGAGTTCACGCGTTTGCGGTTGAGAACGG 992
Query 1031 AGTCGCCGAAGCGTTAGTAAAGTTGATTCGCGATTCGGTTTCGTCTAGTTCAACAAAATC 1090
||||| || |||||||| ||||||||||||||||||||||||||||| | ||||| ||
Sbjct 993 TGTCGCGGAGGCGTTAGTGAAGTTGATTCGCGATTCGGTTTCGTCTAGCGCGACAAACTC 1052
Query 1091 TTCGTTGATAGCGATTTATCAAATGGTGTTGCAAAAGCCTGAAATCGCGTCGGAGTTTCT 1150
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1053 TTCGTTAATAGCGATTTATCAAATGGTGTTGCAAAAGCCTGAGATCGCGTCGGAGTTTCT 1112
Query 1151 CGAAATTGGTTTGGTGAGTATAACGGTGGAGATGATCGTTGATGCCGAGAATAGCGTTTG 1210
|||||| ||| | |||| | ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1113 CGAAATCGGTCTAGTGAATCTAACGGTGGAGATGATCGTTGATGCTGAGAATAGCGTTTG 1172
Query 1211 TGAAAAAGCGTTAGCGGTTCTTGACGCGATTTGCGAAACAGAACATGGTAGAGAGGAAGT 1270
|| ||||||||||| ||||| ||||||||||||||||| ||| | || |||||||||||
Sbjct 1173 CGAGAAAGCGTTAGCAGTTCTAGACGCGATTTGCGAAACCGAAAAAGGGAGAGAGGAAGT 1232
Query 1271 GAGGAAAAATGCGTTGGTGATGCCGCTTTTGGTGAAGAAGATTGCGAAGGTTTCTGAATT 1330
||| ||||| | |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1233 GAGTAAAAACGAGTTGGTGATGCCGCTTTTGGTGAAGAAGATACCGAAGGTTTCTGAATC 1292
Query 1331 AGCGACTAGGAGCTCAATGTCAATGATTTTGAAGCTGTGGAAAACAGGAAACACGGTTGC 1390
|||||||||||||||||||||| |||||||||| |||| ||||||| |||| || ||||
Sbjct 1293 AGCGACTAGGAGCTCAATGTCAGTGATTTTGAAATTGTGTAAAACAGAAAACGCGTTTGC 1352
Query 1391 GGTTGAAGATGCGGTGCGTTTGGGCGCGTTTCAGAAGGTGTTGCTTGTGTTGCAAGTTGG 1450
||||||||| | ||| |||||||| || ||||| ||||||||||||||||| ||||||||
Sbjct 1353 GGTTGAAGAAGTGGTCCGTTTGGGTGCATTTCAAAAGGTGTTGCTTGTGTTACAAGTTGG 1412
Query 1451 GTATGGAGAAGAGACTAAGGAGAAAGCGACAGAGTTGTTGAAGATGATGAATACACAAAT 1510
|||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1413 GTATGGAGAAGAAACTAAGGAGAAAGCAACTGAGTTGTTGAAGATGATGAATACACAAAT 1472
Query 1511 GAAATTGATGAGTGATTGTGTTGATTCTTTAAAAGAGTTTAAGTATATCAAAAAGCCATT 1570
||||||||||| || |||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1473 GAAATTGATGAATGGTTGTGTTGATTCTTTAAAGGAGTTTAAGTATATCAAGAAGCCATT 1532
Query 1571 TTGAC-----ATAAACGACAGATTAGATTTCAACTAATAATAC-AAAAACCTTTGAAAGA 1624
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1533 TTGATGTTTTATAAACGACAGATTAGATTTCAACTAATAATACCAAAAACCTTTGAAAGA 1592
Query 1625 AACATTGAATCTTGGGGATCAAGCAAATATTTTGGGCCCCCAACAATGGT 1674
||||||||||||||||||| | |||||||||||||||| ||||||| |||
Sbjct 1593 AACATTGAATCTTGGGGATTACGCAAATATTTTGGGCCGCCAACAAGGGT 1642
Score = 289 bits (156), Expect = 6e-77
Identities = 192/208 (92%), Gaps = 7/208 (3%)
Strand=Plus/Plus
Query 1 AATCAACTGAAAGTTCTTTTATTCCTTGAAAAATTCAATGGTCAAAAGTTTCCAGTCCCT 60
|||||||||||| ||| |||||||||| |||||||||||||||||||||| || | ||
Sbjct 1 AATCAACTGAAAATTC--TTATTCCTTG-AAAATTCAATGGTCAAAAGTTTTCA-TTTCT 56
Query 61 -AGACCAACACAACTTGCAAATTAGACCTAATTAAACCTTCCTCATTCTCTCTTTTCCCC 119
|||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 57 AAGACCAACCCAGCTTGCAAATTAGACCTAATAAAACCTTCCTCATTCTCTCTTTTCCCC 116
Query 120 TAATTTTGACCAACAAATATTGACTTAGaaaaaaaaaaCCATTACATATAAATATAATCT 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 117 TAATTTTGACCAACAAATATTGACTTAGAAAAAAAAAACCATTACATATAAATAAAATCT 176
Query 180 CATCCCAACCCAA-AATCTTAAAACCCA 206
|||||||||| || |||||| |||||||
Sbjct 177 CATCCCAACC-AACAATCTTTAAACCCA 203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62772723760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5