BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37520.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330287 jgi|Araly1|330287|fgenesh1_pm.C_scaffold_7002514 739 0.0
> Ahg330287 jgi|Araly1|330287|fgenesh1_pm.C_scaffold_7002514
Length=1206
Score = 739 bits (400), Expect = 0.0
Identities = 466/498 (94%), Gaps = 4/498 (1%)
Strand=Plus/Plus
Query 103 GCAGGTCAAAATCAGTGTTATAACAGCTTGTGTCCGGCTGGAATCATTTTGGTCCGTTCA 162
|||||| ||||| |||||||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct 709 GCAGGTAAAAATGAGTGTTATAACAGCATGTGTCCAGCTGGGATCATTTTGGTCCGTTCA 768
Query 163 GATATTCCTCTTGGTGGGCTTCGAGGTCCTCCTGGTGTCCGTGGTTCTACACAAATAGT- 221
|||||||||||||||| ||||||||||||||||||||| ||||| |||| |||| || |
Sbjct 769 GATATTCCTCTTGGTGTGCTTCGAGGTCCTCCTGGTGTTCGTGGCTCTAAACAAGTA-TC 827
Query 222 ATATGATACATATGGATTACTCAAGGACAAAGCAAATGGTAATTGGTGGCTCGAGTTTGG 281
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 828 ATATGATACATATGGATTACTAAAGGATAAAGCAAATGGTAATTGGTGGCTCGAGTTTGG 887
Query 282 AGGAATACAAATTGGGTTTTGGCCAGCAAACATATTTCAACAGAGTTTGGCTAACAGTGT 341
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
Sbjct 888 AGGAATACAAATTGGGTTTTGGCCAGCAAATATATTTCAACAGAGTTTGGGTAACAGTAT 947
Query 342 CGAGTGGGGAGGAGAAGTATATAGCGCATCTCTGCCGGGTCCTCGTATGGGAAATGGTTA 401
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 948 CGAGTGGGGAGGAGAAGTATATAGTGCATCTCTGCCGGGTCCTCGTATGGGAAATGGTTA 1007
Query 402 TTTTCCATTGTTAGATCCAG-TGGACGATGCACATGTGTGTAATATAACTTTAGTTGATG 460
||||||||||||||||||| | ||||||||||||| |||||||||||| ||||||||
Sbjct 1008 TTTTCCATTGTTAGATCCATATT-ACGATGCACATGTATGTAATATAACTACAGTTGATG 1066
Query 461 AGAATTTTAAGGTTGATAAGATGGTAAAAAATATAGAGACATTCTCGGATAACAATCATA 520
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1067 AGAATTTTAATATTGATAGGATGGTAAAAAATATAGAGACATTCTCGGATAACAATCGTA 1126
Query 521 GTTATAAAGTATACGAGGATTTAGATTCAGGACTACCGGTTGGACATATCATATATTTTG 580
||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1127 GTTATAAAGTAAACGAGGATTTAGATTCAGGATTACCGGTCGGACATATCATATATTTTG 1186
Query 581 GAGGTCCTGGAAAGATGT 598
||||||||||||||||||
Sbjct 1187 GAGGTCCTGGAAAGATGT 1204
Score = 152 bits (82), Expect = 3e-36
Identities = 96/103 (93%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 1 ATGGCTATTTCTGTACATGATCCTGAAGTTAGATCTCCGCAATTTAGTTCTTCTCGTATG 60
|||| ||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||
Sbjct 553 ATGGTTATTTCTGTACATGATCCTGAAGTTAGATATCCGCAGTTTAGTTCTGCTCGTATG 612
Query 61 CACGTTCAGATTGGAGACGATTTTATTCAAGCTGGATGGACTG 103
||| ||||||||||||| ||||||||||||| |||||||||||
Sbjct 613 CACTTTCAGATTGGAGATGATTTTATTCAAGTTGGATGGACTG 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21977619264
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5