BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37530.1
Length=1547
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947402 jgi|Araly1|947402|scaffold_703631.1 2285 0.0
> Ahg947402 jgi|Araly1|947402|scaffold_703631.1
Length=1414
Score = 2285 bits (1237), Expect = 0.0
Identities = 1340/1390 (96%), Gaps = 5/1390 (0%)
Strand=Plus/Plus
Query 1 GAGAAATCAAACGGTAATGGAGGAGAAATCAAAGTATCTAAGTCTCGTCGGAGCCGGAGC 60
||| ||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 6 GAGTAATTAAACGGTAATGGAGGAGAAATTAAAGTATCTGAGTCTCGTCGGAGCCGGAGC 65
Query 61 TCTT-ATCGGATCCATCTCCACCGTCGCTCTCCTTAAACTTCTCTCCAGGAGTTCATTGA 119
| || |||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 66 T-TTAATCGGATCCATCTCCACCGTCGCTCTCCTTAAACTTCTCTCCAGGACTTCACTGA 124
Query 120 AGCAGCTTAATGAAAACCCAGAAACTAATTTCTTAGCAGGAAATGGTATTGAATCTGAAA 179
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 125 AGCAGCTTAAAGAAAACCCAGAAACTAATTTCTT---AGGAAATGGTATTGAATCTGAAA 181
Query 180 CAAGACCAGATACTGTAGCAAATGGTCAAGATCTTTTGAAAGATGAAATTGTTTCTGAAC 239
||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 182 CAAGACCAGTTACTGTAGCAGTTGGTCAGGATCTTTTGAAAGATGAAATTGTTTCTGAAC 241
Query 240 ATTTAACCAGGAATATACAGTTTTTCGGTCTTGAATCGCAGCATAAAGTAACTGGATCAT 299
||||||| |||||||| ||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 242 ATTTAACTAGGAATATCCAGTTTTTCGGTCTTGAGTCGCAGCGTAAAGTAACTGGATCAT 301
Query 300 ATGTTGTGGTTATTGGACTTGGAGGTGTAGGGAGTCATGCTGCATCTATGCTCTTGAGGT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 ATGTTGTGGTTATTGGACTTGGAGGTGTAGGGAGTCATGCTGCATCTATGCTCTTGAGGT 361
Query 360 CAGGTGTTGGCAAGCTTCTCCTTGTTGACTTTGATCAGGTGTCACTATCATCATTAAATC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 CAGGTGTTGGCAAGCTTCTCCTTGTTGACTTTGATCAGGTGTCACTATCATCATTAAATC 421
Query 420 GACACGCTGTTGCAACACGAGCAGATGTTGGTATTCCGAAAGCTATGTGTCTCAAGAAGC 479
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 422 GACACGCTGTTGCAACACGAGCAGATGTTGGTATTCCGAAAGCTATATGTCTCAAGAAGC 481
Query 480 ATTTCTCTTCAATCTTTCCTGAATGCCATATAGAAGCCAAGGTGATGCTGTATGACTCAT 539
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 482 ATTTCTCTTCAATCTTTCCTGAATGCCGTATAGAAGCCAAGGTGATGCTGTATGACTCAT 541
Query 540 CATCTGAAGAAGAAATTCTTTCAGGCAAGCCAGATTTCGTTCTGGACTGCATTGACAACA 599
|||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||
Sbjct 542 CATCTGAAGAAGAAATTCTTTCAGGCAACCCAGGTTTTGTTCTGGACTGCATTGACAACA 601
Query 600 TCGATACAAAGGTGGGACTTTTGGCTGCATGTGTTAAGAGGGGTTTGAAAGTTCTGAGTG 659
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 602 TCGATACAAAGGTGGGACTTTTGGCTGCATGCGTTAAGAGGGGTTTGAAAGTTCTGAGTG 661
Query 660 CAACTGGTGCTGGGGCTAGAGCTGACCCAACAAGAATCAGAGTGGCTGATATAAGAGAGT 719
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 CAACTGGTGCAGGTGCTAGAGCTGACCCAACAAGAATCAGAGTGGCTGATATAAGAGAGT 721
Query 720 CAACAATTGACCCGTTATCTCGATCTGTAAGACACAGATTGAGGAGAAAACACGGCATTG 779
||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 722 CAACAATTGACCCATTATCTCGATCTGTAAGACACAGATTAAGGAGAGAACACGGCATTG 781
Query 780 AAGGAGGCATTCCTGTTGTATTTTCCCTGGAAAAACCAAAAGCAAAGCTGCTTCCCTTTG 839
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 782 AAGGAGGCATTCCTGTTGTGTTTTCCCTGGAAAAACCAAAAGCAAAGCTGCTTCCATTTA 841
Query 840 AGGGGACAAATGGAGAAGACGAGAATCCTTTAGATTATCAAGTTGTTCCTGGCTTTCGTG 899
||||| ||||||| |||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 842 AGGGGCCAAATGGGGAAGACGAGAATCCTTCAGATTATCAAGTAGTTCCTGGCTTTCGTG 901
Query 900 TTCGGATAATTCCTGTTCTCGGAACCATCCCGGCTATATTTGGACAAATTATGGCCTCCT 959
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 902 TTCGGATAATTCCTGTTCTCGGAACCATCCCGGCTATTTTTGGACAAATCATGGCCTCCT 961
Query 960 ATGTTATAACACAACTTGCAGGTGTGCAAGTTCAGATGGAGCCTATAGTGAATCTAGATT 1019
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 962 ATGTTATAACACAACTTGCAGGTGTGCAAGTTCAGATGGAGCCAATAGTGAATCTAGATT 1021
Query 1020 TGGATCATTACCGATTGCTTCATCAACGCCTTATTGAGCATGAGGAGACAGTTTATGGCA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 TGGATCATTACCGATTGCTTCATCAACGCCTTATTGAGCATGAGGAGACAGTTTATGGCA 1081
Query 1080 CATCTGCTGAAGTCGAGGTGGATGTTGAGGAAGTGATGTACATAGTGAAAGAGTTGTGGC 1139
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 CATCTGCAGAAGTCGAGGTGGATGTTGAGGAAGTGATGTACATAGTGAAAGAGTTGTGGC 1141
Query 1140 ACGGACGAAGTGCTAGAGATGAGACTGCAAAAGATGTTGGCAGAGGGATGTGGCGAGCCA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 ACGGACGAAGTGCTAGAGATGAGACTGCAAAAGATGTTGGCAGAGGGATGTGGCGAGCCA 1201
Query 1200 TGAATGAGTTGATGCTCGTAAGATGGGATGCAAAAAAGCCAGCAACAGTCTCAAACTTGG 1259
||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1202 TGAATGAGTTGATGCTCATAAGATGGGATGCAAAGAAGCCAGCAACAGTCTCGAACTTGA 1261
Query 1260 TTCTTTTGAAGTTCAAAGAGGCGGATGAACATGAGACTAAGACTCTTGAGGAAGTGAAGG 1319
||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1262 TTCTTTTGAAGTTTAAAGAGGCGGATGAACACGAGGCTAAGACTCTTGAGGAAGTGAAGG 1321
Query 1320 AAAGTGAAACAGAGTTCTTTGAAAGAGTTTCATGCGTACTGAAGAAGGCAGAGCTTGATT 1379
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1322 AAAGTGAAACAGAGTTCTTTGAAAGAGTTTCATGCATACTGAAGAAGGCAGAGCTTGATT 1381
Query 1380 TCTACGGCTA 1389
||||||||||
Sbjct 1382 TCTACGGCTA 1391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57935262645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5