BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37540.1
Length=1597
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493732 jgi|Araly1|493732|fgenesh2_kg.7__3165__AT5G37540.1 2435 0.0
Ahg908102 jgi|Araly1|908102|Al_scaffold_0002_1183 558 4e-158
> Ahg493732 jgi|Araly1|493732|fgenesh2_kg.7__3165__AT5G37540.1
Length=1589
Score = 2435 bits (1318), Expect = 0.0
Identities = 1507/1596 (94%), Gaps = 21/1596 (1%)
Strand=Plus/Plus
Query 1 CTCACTCACTCTCACTCACa-aaaaaaaaTGTCTAC-CATTTCAAAACctctcttcttaa 58
||||||||||||||||| || ||||||||||||| | |||||||||||||||||||||||
Sbjct 1 CTCACTCACTCTCACTCTCACAAAAAAAATGTCT-CACATTTCAAAACCTCTCTTCTTAA 59
Query 59 aacttctctata---tcttcttcttcttctgctactcagtttctctctcatggtcttcgt 115
|||||||||||| ||||||||||||||||| ||||||||||| | |||||||| ||||
Sbjct 60 AACTTCTCTATATCTTCTTCTTCTTCTTCTGCAACTCAGTTTCTTTATCATGGTCGTCGT 119
Query 116 ctctttctctccactttcctctcacatctcttcgtctcactccaaccacaaactcctcct 175
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTCTTTCTCTCCATTTTCCTCTCACATCTCTTCGTCTCACTCCAACCACAAACTCCTCCT 179
Query 176 ccttCAAAACCTCCCTCCTTTCTCGCCGGAACCCATCTCCGCCGTCGTCTCCGTACACTT 235
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 180 CCTTCAAAACCTCCCTCCTCTCTCGCCGGAACCCATCTCCGTCGTCGTCTCCGTACACTT 239
Query 236 TCCGATCAAACATCAAATACTCAATGGCTCTAATCCTCTCTCTTCCCATAGGAACACCAT 295
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCCGATCAAACTTCAAATACTCAATGGCTCTAATCCTCTCTCTTCCCATAGGAACACCAT 299
Query 296 CTCAGTCACAAGAGCTAGTTCTTGACACCGGAAGCCAACTCTCATGGATCCAATGCCATC 355
|||| || ||||||||||||||||| |||||||||||||||||||||||||| || || |
Sbjct 300 CTCAATCTCAAGAGCTAGTTCTTGATACCGGAAGCCAACTCTCATGGATCCAGTGTCACC 359
Query 356 CCAAGAAAATCAAGAAACCACTTCCTCCTCCAACGACGTCGTTTGATCCTTCTTTATCTT 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CCAAGAAAATCAAGAAACCACTTCCTCCTCCAACGACGTCGTTTGATCCTTCTTTATCTT 419
Query 416 CATCGTTCTCCGACCTACCTTGCTCTCATCCTCTTTGTAAACCTA-GAATTCCCGATTTT 474
|||||||||||||| |||||||||| ||||||||||||||||| | ||||||||||||||
Sbjct 420 CATCGTTCTCCGACTTACCTTGCTCACATCCTCTTTGTAAACC-ACGAATTCCCGATTTT 478
Query 475 ACCCTTCCCACGTCTTGTGACTCGAACCGTCTCTGTCACTACTCTTACTTCTACGCTGAT 534
||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 479 ACCCTCCCCACTTCTTGTGACTCAAACCGTCTCTGTCACTACTCATACTTCTACGCTGAT 538
Query 535 GGAACCTTCGCCGAGGGCAATCTCGTTAAAGAAAAATTCACTTTCTCAAATTCCCAAACT 594
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 539 GGAACCTTCGCTGAGGGCAATCTCGTCAAAGAAAAATTCACTTTCTCAAACTCCCAAACT 598
Query 595 ACCCCTCCTTTGATTCTTGGTTGTGCTAAAGAGTCAACTGACGAGAAGGGTATTTTGGGA 654
|||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 599 ACCCCTCCATTGATTCTTGGTTGCGCTAAAGAGTCAACAGACGAGAAGGGTATTTTGGGA 658
Query 655 ATGAATCTTGGTCGTCTTTCTTTTATCTCACAAGCAAAGATTTCTAAATTCTCTTACTGT 714
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 659 ATGAATCTTGGTCGTCTTTCTTTTATCTCACAAGCAAAGATATCTAAATTCTCTTATTGT 718
Query 715 ATCCCAACCCGGTCAAACCGTCCCGGTTTAGCCTCAACCGGCTCGTTTTACCTCGGAGAT 774
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 719 ATCCCAACCCGGTCAAACCGTCCCGGTTTAGCCTCAACCGGTTCATTTTACCTCGGAGAT 778
Query 775 AACCCGAATTCTCGTGGTTTCAAATACGTTTCTCTTTTGACTTTTCCTCAAAGTCAACGC 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AACCCGAATTCTCGTGGTTTCAAATACGTTTCTCTTTTGACTTTTCCTCAAAGTCAACGC 838
Query 835 ATGCCGAATCTAGACCCTTTAGCTTACACTGTACCATTACAAGGTATCAGAATCGGACAA 894
||||||||||| |||||| |||||||||| ||||| || | ||||||||||||||||||
Sbjct 839 ATGCCGAATCTTGACCCTCTAGCTTACACAGTACCTTTGCTTGGTATCAGAATCGGACAA 898
Query 895 AAGAGACTCAACATACCCGGTTCTGTTTTTAGACCCGATGCAGGTGGGTCGGGTCAAACC 954
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 899 AAGAGACTCAACATACCCGGTTCTGTTTTTAGACCCGATGCAGGCGGGTCGGGTCAAACC 958
Query 955 ATGGTTGATTCGGGTTCTGAATTTACTCACTTAGTCGACGTGGCGTATGATAAAGTCAAA 1014
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ATGGTGGATTCGGGTTCAGAATTTACTCACTTAGTCGACGTGGCGTATGATAAAGTCAAA 1018
Query 1015 GAAGAAATAGTGAGGCTTGTGGGATCAAGATTAAAGAAAGGTTACGTGTACGGTTCGACA 1074
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1019 GAAGAAATAGTGAGGCTTGTGGGGTCAAGATTAAAGAAAGGTTACGTGTACGGTTCAACA 1078
Query 1075 GCTGACATGTGTTTTGATGGTAACCATTCGATGGAGATCGGACGGTTGATAGGCGATCTT 1134
|||||||||||||| ||||| |||||| |||||| |||||||||||||||||||||||||
Sbjct 1079 GCTGACATGTGTTTCGATGGAAACCATCCGATGGTGATCGGACGGTTGATAGGCGATCTT 1138
Query 1135 GTGTTTGAGTTTGGGAGAGGTGTTGAGATACTCGTTGAGAAACAAAGCCTTTTGGTTAAC 1194
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1139 GTGTTTGAGTTTGGGAGAGGTGTTGAGATACTCGTTGAGAAACAAAGGCTTTTGGTTAAC 1198
Query 1195 GTAGGAGGTGGGATTCACTGTGTTGGAATCGGACGGTCAAGCATGCTTGGTGCAGCTAGT 1254
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1199 GTTGGAGGTGGGATTCACTGTGTTGGAATCGGACGGTCAAGTATGCTTGGTGCAGCTAGT 1258
Query 1255 AATATAATCGGGAACGTTCATCAGCAAAATCTTTGGGTTGAGTTTGATGT-GACCAATAG 1313
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1259 AATATAATCGGGAACGTTCATCAGCAAAATCTTTGGGTTGAGTTTGATGTAG-CCAATAG 1317
Query 1314 GAGAGTTGGTTTTAGTAAAGCTGAGTGTAG-A--TTATTGCCGTGAGTAGGTGAATATTC 1370
|||||||||||||||||||||||||||||| | || | |||||||| |||||||||||
Sbjct 1318 GAGAGTTGGTTTTAGTAAAGCTGAGTGTAGCAGATTGTCGCCGTGAGAAGGTGAATATT- 1376
Query 1371 T-TCTACGGTCGTGCGTATTAGTTTTG-AGTTGTATCTCATTATGATGATCGTTGGATGT 1428
| || |||||||||||||| |||||| |||||| | | |||||||||||||||||||||
Sbjct 1377 TGTCCACGGTCGTGCGTATG-GTTTTGGAGTTGTGTATGATTATGATGATCGTTGGATGT 1435
Query 1429 TTGATCGAATGGTGTATAGGAAATCTGGGATTTTTGTGGGTCCC-GTAGAAGGACAACTG 1487
||||||| | |||||||| ||| ||||||||||| ||||||||| ||||||||||| |||
Sbjct 1436 TTGATCGGACGGTGTATATGAA-TCTGGGATTTT-GTGGGTCCCTGTAGAAGGACATCTG 1493
Query 1488 TCTGAAGCAAACTTCTCAATCTTTATTA-GGCTCTGGAACTATGTATAAATGTTTGTACT 1546
|| |||||||| |||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1494 TCAGAAGCAAAGTTCTGAATCTTTATTAAGGCTCTGGAACTATGTATAAATGAATGTACT 1553
Query 1547 ATGATAATTAAAAGCTTGTATATTAAATGGTTAATA 1582
||||||||||||||||||||||||| ||||||||||
Sbjct 1554 ATGATAATTAAAAGCTTGTATATTATATGGTTAATA 1589
> Ahg908102 jgi|Araly1|908102|Al_scaffold_0002_1183
Length=975
Score = 558 bits (302), Expect = 4e-158
Identities = 632/781 (81%), Gaps = 63/781 (8%)
Strand=Plus/Plus
Query 71 tcttcttcttcttctgctactca-gtttctctctcatggtcttcgtctctttctctccac 129
||||||||||| ||| | ||| | || ||||||||| | | || || || ||||||
Sbjct 32 TCTTCTTCTTCCTCTTCAACT-ATGTATCTCTCTCA---AC--C-TCACTCTCCCTCCAC 84
Query 130 tttcctctcacatctct-tcgtctcactccaaccacaaactcctc-ctc-cttCAAAACC 186
| || ||||||||||| || | || | || |||||||||| ||| | | ||||| |||
Sbjct 85 CTCCCACTCACATCTCTCTC-TATCTCCCCCACCACAAACT-CTCAC-CGCTTCACCACC 141
Query 187 TCCCTCCTTTCTCGCCGG--AA-CCCATCTCCGCCGTCGT-CTCCGTAC-ACTTTCCGAT 241
|| |||| |||| |||| || |||||||||| |||| | | || ||| || |||||||
Sbjct 142 TCTCTCC--TCTC-CCGGAAAACCCCATCTCCGTCGTC-TCCACCTTACAAC-TTCCGAT 196
Query 242 CAAACA-TCAAATACTCAATGGCTCTAATCCTCTCTCTTCCCATAGGAACACCATCTC-A 299
| || | ||||||||||||||||| ||||| |||| || ||||||||||||||| | | |
Sbjct 197 C-AAGATTCAAATACTCAATGGCTTTAATCATCTCACTCCCCATAGGAACACCACCACAA 255
Query 300 GTCACAAGAGCTAGTTCTTGACACCGGAAGCCAACTCTCATGGATCCAATGCCATCCCAA 359
| | ||| | | |||||||| |||||||||||||| || ||||||||||| ||| |
Sbjct 256 G-CTCAACAAATGGTTCTTGATACCGGAAGCCAACTTTCTTGGATCCAATGTCAT--C-- 310
Query 360 GAAAATCAAGAAACCACTTCCTCC---TCC-AACGACGTCGTTTGATCCTTCT-TTATCT 414
| | || ||| |||||||| || || || || |||||||| ||| || |||
Sbjct 311 G----T-AA-AAA--GCTTCCTCCAAAACCTAA-AACATCTTTTGATCCATCTCTT-TCT 360
Query 415 TCATCGTTCTCCGAC-CTACCTTGCTCTCATCCTCTTTGTAAACCTAGAATTCCCGATTT 473
|| || |||| | || |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 361 TCTTCTTTCT-CTACTTTACCTTGCTCTCATCCTCTTTGTAAACCAAGAATTCCCGATTT 419
Query 474 TACCCTTCCCACGTCTTGTGACTCGAACC-GTCTCTGTCACTACTCTTACTTCTACGCTG 532
|||||||||||| |||||||||||||||| || | ||||| |||||||||||||||||||
Sbjct 420 TACCCTTCCCACTTCTTGTGACTCGAACCGGT-TATGTCATTACTCTTACTTCTACGCTG 478
Query 533 ATGGAACCTTCGCCGAGGGCAATCTCGTTAAAGAAAAATTCACTTTCTCAAATTCCCAAA 592
||||||||||||| ||||| |||||||| ||||||||| |||||||||||||| || |||
Sbjct 479 ATGGAACCTTCGCTGAGGGTAATCTCGTCAAAGAAAAAATCACTTTCTCAAATACCGAAA 538
Query 593 CTACCCCTCCTTTGATTCTTGGTTGTGCTAAAG-AGTCAACTGACGAGAAGGGTATTTTG 651
||||||||||||||||||||| ||||| || | |||| |||| || | ||||||||||
Sbjct 539 TTACCCCTCCTTTGATTCTTGGATGTGC-AACGGAGTCTTCTGATGATAGGGGTATTTTG 597
Query 652 GGAATGAATCTTGGTCGTCTTTCTTTTATCTCACAAGCAAAGATTTCTAAA-TTCTCTTA 710
|| ||||||| ||||||||| |||||| | || ||||| |||||| | ||| ||||||||
Sbjct 598 GGGATGAATCGTGGTCGTCTCTCTTTTGTTTCTCAAGCTAAGATTAC-AAAGTTCTCTTA 656
Query 711 CTGTATCCCAACCCGG-TCAAACCGTCCCGGTTT-AGCCTC-AACCGGCTCGTTTTACCT 767
|||||||| || |||||||| |||||||| | | || |||||| |||||||||||
Sbjct 657 TTGTATCCCT-CCTAAATCAAACCGGCCCGGTTTTA-C-TCCAACCGGTTCGTTTTACCT 713
Query 768 CGGAGATAACCCGAATTCTCGTGGTTTCAAATACGTTTCTCTT-TTGACTTTTCCTCAAA 826
||||||||||||||||||| || ||||||||||||||| || ||||| |||||| |||
Sbjct 714 CGGAGATAACCCGAATTCTAAAGGATTCAAATACGTTTCT-TTGTTGACATTTCCTGAAA 772
Query 827 G 827
|
Sbjct 773 G 773
Score = 254 bits (137), Expect = 2e-66
Identities = 172/189 (91%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 1156 GTTGAGATACTCGTTGAGAAACAAAGCCTTTTGGTTAACGTAGGAGGTGGGATTCACTGT 1215
||||||||||| ||| |||| | || |||||||||||||||||| |||||||||||||
Sbjct 775 GTTGAGATACTTGTTCCGAAAGAGAGGGTTTTGGTTAACGTAGGAGATGGGATTCACTGT 834
Query 1216 GTTGGAATCGGACGGTCAAGCATGCTTGGTGCAGCTAGTAATATAATCGGGAACGTTCAT 1275
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 835 GTTGGAATCGGACGGTCGAGTATGCTTGGAGCAGCTAGTAATATAATCGGGAACGTTCAT 894
Query 1276 CAGCAAAATCTTTGGGTTGAGTTTGATGTGACCAATAGGAGAGTTGGTTTTAG-TAAAGC 1334
|| ||||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 895 CAACAAAATCTTTGGGTTGAGTTTGATGTGACCAATAGGAGAGTTGGTTTC-GCTAGAGC 953
Query 1335 TGAGTGTAG 1343
||| |||||
Sbjct 954 TGATTGTAG 962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839774895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5