BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37550.1
Length=968
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493733 jgi|Araly1|493733|fgenesh2_kg.7__3166__AT5G37550.1 1203 0.0
> Ahg493733 jgi|Araly1|493733|fgenesh2_kg.7__3166__AT5G37550.1
Length=855
Score = 1203 bits (651), Expect = 0.0
Identities = 799/869 (92%), Gaps = 16/869 (2%)
Strand=Plus/Plus
Query 2 TTTCTAAGCATTTCCCTCTATTAACGTGTCCACTCCAAATTCCACAAACCCAAAAAACAT 61
||||| ||| || | |||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1 TTTCTTAGCCTTGCACTCTATTAACGTGTCCCCTCCAAATTCCACAAACCCAAAAAAGAT 60
Query 62 TATAATCAATGAAC--GATGCTTCCATTCGCCAACTACTACATTTCAACACCAATTATGT 119
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 TATAATCAATGAACTATATGCTTCCGTTCGCCAACTACTACATTTCAACACCAATTATGT 120
Query 120 CCGAGAAGAAGAGCATCACCAGAAGCCGTAACAATAGTAGAAAGAAGAGATGGTCACCGA 179
|||||||||| | | ||||||||||| |||||||||| ||||||||||||||| ||||||
Sbjct 121 CCGAGAAGAAAAACTTCACCAGAAGCAGTAACAATAGGAGAAAGAAGAGATGGACACCGA 180
Query 180 CGCTCTTTGCCggaggaggaggaggaagaggaggaggaggagATGATGAGCTGGCGACAG 239
| ||||| ||||||| |||||| | ||||| ||| |||||||||||||||||||||||
Sbjct 181 CACTCTTCACCGGAGGCGGAGGA-G--GAGGAAGAGCAGGAGATGATGAGCTGGCGACAG 237
Query 240 TGAAAGCTGCGGCGTGGGCTTGGTACCAAAGACACGAAGGAAAGCCGATGATGAGAGAGT 299
|||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 238 TGAAAGCTGCTGCGTGGGCTTGGTACCAAAGACACGAAGGAAAACCAATGATGAGAGAGT 297
Query 300 TCGATCTCTCGAAAAGAGCCATAAGAACACCTCGACCTTCGCGGTATAAGCTCGAGGCCA 359
|||||||| | | |||||||| |||||||||||||||||| |||||||||||||| ||||
Sbjct 298 TCGATCTCACTACAAGAGCCACAAGAACACCTCGACCTTCCCGGTATAAGCTCGAAGCCA 357
Query 360 ACAAGACCATGATCCTCTCCGAGAATAAGGTTTCTAAACCACACTCTAATCATTTTTTGC 419
||||| |||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 358 GCAAGAACATGATCCTCTCTGAGAATAAGGTTTCAAAACCACACTCTAATCATTTGATGC 417
Query 420 GTGGAGATCAAGAAACCAAGTTGTCTAGTCTTCTTGATTCTTATGAGATCAAGAGCATCT 479
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 418 GTGGAGATCAAGAAACCAAGTTCTCTAGTCTTCTTGACCCTTATGAGATCAAGAGCATCT 477
Query 480 CTAAGAGGATTGATGAGGGTTCGTTACCAACTATTGGTTTCTGGAATGATCATGGTCAAC 539
||||||| ||||| ||||||||||||||||||| || |||| |||||| ||||||||| |
Sbjct 478 CTAAGAGAATTGACGAGGGTTCGTTACCAACTAGTGTTTTCCGGAATGGTCATGGTCATC 537
Query 540 ATTATGATCATAATATGTTGCAGAAGAAGCTTGAATATGATAGTAAGCAAGAGAATGGGT 599
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 538 ATTATGATCATAATATGTTGCAGAAGAAGCTTGAATATGATAGTAAGAAAGAGAATGGGT 597
Query 600 TGGTGaaaaaaaTGAGCATTAGAAATTTGTGGAAAGGAATGATTATGATGGCTCCAAGGA 659
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 598 TGGTGAAAAAAATGAGCATTAGAAATTTGTGGAAAGGAATGATTCTGATGGCTCCAAGGA 657
Query 660 CGGTTTGTGGAAGAAGTGATGACGTGGATCTTGGGGCATATCATCGGGTTGGTCCAAGAA 719
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 658 CGGTTTGTGGAAGAAGTGATGATGTGGATCTTGGGGCATATC---GGGTTGGTCCAAGAA 714
Query 720 CAAAGAAGGTTGCACCGACGAGTGTCAATATGCGTACCGGCCGACGCTAACTCTATGTCT 779
|| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 715 CAGAGAAGGTTGCACCGACGAGTGTCAATATGCGAACCGGCCGTCGCTAACTCTAT---- 770
Query 780 CTATAGTATCTACTCTCTAGTTATTAAGGAGCTAAAATATGTGTTTAGACATTATTAATG 839
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 --A--GTCTCTACTCTCTAGTTATTAAGGAGCTAAAATATGTGTTTAGACATTATTAATG 826
Query 840 CTAAAAGGACTTCTTTTCCACAATATTAA 868
|||||||||||||||||||| || |||||
Sbjct 827 CTAAAAGGACTTCTTTTCCATAACATTAA 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35949910731
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5