BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37590.1
Length=1824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330292 jgi|Araly1|330292|fgenesh1_pm.C_scaffold_7002519 1325 0.0
Ahg330293 jgi|Araly1|330293|fgenesh1_pm.C_scaffold_7002520 1027 0.0
Ahg891049 jgi|Araly1|891049|Al_scaffold_0007_3035 169 8e-41
> Ahg330292 jgi|Araly1|330292|fgenesh1_pm.C_scaffold_7002519
Length=816
Score = 1325 bits (717), Expect = 0.0
Identities = 784/817 (96%), Gaps = 2/817 (0%)
Strand=Plus/Plus
Query 919 ATGGCATATATCAGGAGACTGAGATATCTTTCTCAGATATATATACGATCCAATCGTCTG 978
||| |||||||||||||||||||||||||||| ||||| |||||||||||||||| |||
Sbjct 1 ATGACATATATCAGGAGACTGAGATATCTTTCACAGATTTATATACGATCCAATCATCTA 60
Query 979 GCCGAGGCTGAAAAACTTCAAAGGAAATTATTGCACATGATGGAATTATCGAAGGGATGG 1038
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GCCGAGGCTGAAAAACTTCAAAGGAAATTATTGCACATGATGGAATTATCAAAGGGATGG 120
Query 1039 AACTCAATGGAGGCAATAACTGCAGCTGAAGCATTGGCTCTCACTTTACGATTATCTGGG 1098
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 121 AACTCAATGGAGGCAATAACTGCAGCTGAAGCATTAGCACTCACTTTACGATTATCTGGG 180
Query 1099 AAGCTGGGAGAAGCTCTAGAACTTTTTGAAAAGTGTCTCAATGCCCGaaaaaaaTTACTT 1158
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 CAGCTGGGAGAAGCTCTAGAACTTTTTGAAAAGTGTCTCAATGCCCAAAAAAAATTACTT 240
Query 1159 CCAGAAGGACATATCCAGATAGGTGGAAACTTGCTGCACATCGCAAAGACATTTATGCTT 1218
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 CCAGAAGGACATATCCAGATAGGTGGAAACTTTCTGCACATCGCAAAGACATTTATGCTC 300
Query 1219 CAGGCTAGTCAGATGAGAAGAACTGATAACAGTGAAGCTCTATCCAAACTAGAAAAAGCA 1278
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 CAGGCTAGTCAGATGAGAAGAACTGATAAGAGTGAAGCTCTATCCAAACTAGAAAAAGCA 360
Query 1279 AAGAATTATCTTGAAAACTCAGCTAGGATAGC-AAAGGACGTTCTGCATAAGCTTAAAAA 1337
|||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||
Sbjct 361 AAGAATTATCTTGAAAACTCAGCTAGGATAGCGAAA-GACGTTCTGCTTAAGCTTAAAAA 419
Query 1338 CCAAAAGAGCAAAGCGCAGAAAGACGAAAAATCCAGTGCAGCTCTTAGGAATTATGAACA 1397
|||||||| ||||||||||||| ||||||| ||||||| | |||||||||||||||||||
Sbjct 420 CCAAAAGATCAAAGCGCAGAAACACGAAAAGTCCAGTGTAACTCTTAGGAATTATGAACA 479
Query 1398 CGCGGCTTTAGTCATACTGCTGCAATCTCTTGAGAGTCTTGCAGCTTTGGAGATGAGCAA 1457
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGCGGCGTTAGTCATACTGCTGCAATCTCTTGAGAGTCTTGCAGCTTTGGAGATGAGCAA 539
Query 1458 AAATGAGATCCATGAGCCAAAGGAAGAAAATCTGCATGCAGCTGAAGATTCACTTCTCCA 1517
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 540 AAATGAGATCCAGGAGCCAAAGGAAGAAAATCTGCATGTAGCTGAAGATTCACTTCTCCA 599
Query 1518 ATGTGTTACAGCTTACAAAGAGTTTGGTTATGGAACTCAGCTGCAAGATTCTTCTGAAGT 1577
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 600 ATGTGTTACAGCTTACAAAGAGTTTGGTTATGGAACTCAGCTGCAAGATTCTTTTGAAGT 659
Query 1578 AAAGTCAGAATACCTTTCGTGTCTTAAGCATCTCTCAGCTTTATTAGCAAAGAAAGAGAC 1637
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AAAGTCTGAATACCTTTCGTGTCTTAAGCATCTCTCAGCTTTATTAGCAAAGAAAGAGAC 719
Query 1638 GACGCTTAACTCAAAGGCAAGTCCTATTTCTTTACCAGAGCTCAAGGAAGAAATTAAGCG 1697
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||
Sbjct 720 GACGCTTAACTCAAAGGCAAGTCATATTTCCTTACCAGAGCTCAAGGAAGAAATTAGGCG 779
Query 1698 TATTGACATCGATCTTCGTTCACAAAAGACAGGCTAA 1734
|| ||| ||||||||||||||||||||||| ||||||
Sbjct 780 TACTGAAATCGATCTTCGTTCACAAAAGACTGGCTAA 816
> Ahg330293 jgi|Araly1|330293|fgenesh1_pm.C_scaffold_7002520
Length=765
Score = 1027 bits (556), Expect = 0.0
Identities = 645/686 (94%), Gaps = 13/686 (2%)
Strand=Plus/Plus
Query 79 ATGTCTCTGCTTCGAATTTTGTCGACTCTT-TACAAAGGAACTCATCGGACTTCACGTTC 137
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1 ATGTCTCTGCTTCGAATTTTGTCGACTCTTCT-CAAAGGAACTCATCGGACTTCACGTTC 59
Query 138 CTTCTCTTCTTCGCGGAATCTGATCTGCACCACTTTCGCTAATCCACTCTCCGGGAAACC 197
||| |||||||| ||||||| |||||||||||||||||||||| ||||||||||||| ||
Sbjct 60 CTTTTCTTCTTCCCGGAATCCGATCTGCACCACTTTCGCTAATTCACTCTCCGGGAAGCC 119
Query 198 GA-GGATTTCGTATCAGAATGATTATGGAGGCCATAGAACAAATTTGCATCTCTTGGATT 256
| |||||||||||||||||||||||||||| |||||||| |||||| ||||||||||
Sbjct 120 -ACGGATTTCGTATCAGAATGATTATGGAGGACATAGAACGAATTTGAATCTCTTGGAAC 178
Query 257 CTCGGCTTTGGATTATCTTATCTGGACAAGCTGCAATCCTTGGGTTTTGTGGGAACACTG 316
| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 179 CGCGGCTTTGGATTATCTTTTCTGGTCAAGCTGCAATCCTTGGGTTTTGTGGGAACACTG 238
Query 317 TATTGGCAGAGGATGAGTCTATGAAGTCGAAATCTGGAGATAATATGGATGAGAGTGGCA 376
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 239 TATTGGCAGAGGATGAGTCTATGAAGTCGAAATCTGGAGATAATATGGATGAGA---G-- 293
Query 377 ATACTGGGCTAGAAAAAATTGAGGACGGGTCGGTTGTATCTAATATACACACATCTAAGT 436
|||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 294 ----TGGGCTAGAAAAAATTGAGGACGGTTCGGTTGTATCGAATATACATACATCTAAGT 349
Query 437 GGAGGGTGTTTACTGATAGTGGAAGAGATTATTTCTTTCAGGGGAAACTCGAGCCGGCTG 496
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 350 GGAGGGTGTTTACTGATAGTGGAAGAGATTATTTCTTTCAGGGGAAACTGGAGCCAGCTG 409
Query 497 AGAGACTTTTCGGTTCGGCAATACAGGAAGCTAAGGAAGGTTTTGGAGAGAAGGATCCAC 556
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 AGAGGCTTTTCGGTTCGGCAATACAGGAAGCTAAGGAAGGTTTTGGAGAGAAGGATCCAC 469
Query 557 ATGTTGCATCTGCATGCAACAATCTGGCAGAGTTATATAGAGTCAAGAAAGAATTCGACA 616
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 470 ATGTTGCATCTGCTTGCAACAATCTGGCAGAGTTATATAGAGTGAAGAAAGAATTCGACA 529
Query 617 AAGCAGAGCCTTTATACCTAGAAGCTGTTAGTATCTTGGAGGAGTTCTACGGTCCTGACG 676
|||||||||| |||||| | ||||||||||||||||||||||| ||||| |||||||| |
Sbjct 530 AAGCAGAGCCCTTATACTTGGAAGCTGTTAGTATCTTGGAGGATTTCTATGGTCCTGAAG 589
Query 677 ATGTGCGTGTTGGTGCTACTCTCCACAACCTTGGACAACTCTATCTTGTCCAGCGAAAAC 736
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 ATGTGCGTGTCGGTGCTACTCTCCACAACCTTGGACAACTCTATCTTGTCCAGCGAAAAC 649
Query 737 TTGAGGAAGCTCGTGCGTGCTATGAG 762
||||||||||||||||||||||||||
Sbjct 650 TTGAGGAAGCTCGTGCGTGCTATGAG 675
> Ahg891049 jgi|Araly1|891049|Al_scaffold_0007_3035
Length=468
Score = 169 bits (91), Expect = 8e-41
Identities = 115/126 (91%), Gaps = 4/126 (3%)
Strand=Plus/Plus
Query 290 CAATCC--TTGGGTTTTGTGGGAACACTGTATTGGCAGAGGATGAGTCT-ATGAAGTCGA 346
|||||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||| |
Sbjct 12 CAATCCTATTGTGTTTTCTGGGAACACTGTATTGGTAGTGGATGAGTCTAAT-AAGTCAA 70
Query 347 AATCTGGAGATAATATGGATGAGAGTGGCAATACTGGGCTAGAAAAAATTGAGGACGGGT 406
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 71 AATCTGGAGATAATATGGATGAGAGTGGCAATAGTGGGCTAGAAAAAATTGAGGACGGTT 130
Query 407 CGGTTG 412
||||||
Sbjct 131 CGGTTG 136
Score = 158 bits (85), Expect = 2e-37
Identities = 99/106 (93%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 478 GGGAAACTCGAGCCGGCTGAGAGACTTTTCGGTTCGGCAATACAGGAAGCTAAGGAAGGT 537
|||||||| |||||||||||||| ||||||||||||| || |||||||||||||||||||
Sbjct 136 GGGAAACTGGAGCCGGCTGAGAGGCTTTTCGGTTCGGTAAAACAGGAAGCTAAGGAAGGT 195
Query 538 TTTGGAGAGAAGGATCCACATGTTGCATCTGCATGCAACAATCTGG 583
|||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 196 TTTGGAGAGAAGGATCCACATGTTGCCCCTGCATGTAACAATCTGG 241
Score = 119 bits (64), Expect = 8e-26
Identities = 90/101 (89%), Gaps = 7/101 (7%)
Strand=Plus/Plus
Query 590 TATATAGAGTCAAGAAAGAATTCGACAAAGCAGAGCC-TT-TA--T-A--CCTAGAAGCT 642
||||||||||||||||||||||||||||||||||||| || || | | |||||||| |
Sbjct 364 TATATAGAGTCAAGAAAGAATTCGACAAAGCAGAGCCCTTATACGTTATACCTAGAAGTT 423
Query 643 GTTAGTATCTTGGAGGAGTTCTACGGTCCTGACGATGTGCG 683
||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 424 GTTAGTATCTTGGAGGATTTCTATGGTCCTGAAGATGTGCG 464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68486260510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5