BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G37590.1 Length=1824 Score E Sequences producing significant alignments: (Bits) Value Ahg330292 jgi|Araly1|330292|fgenesh1_pm.C_scaffold_7002519 1325 0.0 Ahg330293 jgi|Araly1|330293|fgenesh1_pm.C_scaffold_7002520 1027 0.0 Ahg891049 jgi|Araly1|891049|Al_scaffold_0007_3035 169 8e-41 > Ahg330292 jgi|Araly1|330292|fgenesh1_pm.C_scaffold_7002519 Length=816 Score = 1325 bits (717), Expect = 0.0 Identities = 784/817 (96%), Gaps = 2/817 (0%) Strand=Plus/Plus Query 919 ATGGCATATATCAGGAGACTGAGATATCTTTCTCAGATATATATACGATCCAATCGTCTG 978 ||| |||||||||||||||||||||||||||| ||||| |||||||||||||||| ||| Sbjct 1 ATGACATATATCAGGAGACTGAGATATCTTTCACAGATTTATATACGATCCAATCATCTA 60 Query 979 GCCGAGGCTGAAAAACTTCAAAGGAAATTATTGCACATGATGGAATTATCGAAGGGATGG 1038 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 61 GCCGAGGCTGAAAAACTTCAAAGGAAATTATTGCACATGATGGAATTATCAAAGGGATGG 120 Query 1039 AACTCAATGGAGGCAATAACTGCAGCTGAAGCATTGGCTCTCACTTTACGATTATCTGGG 1098 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 121 AACTCAATGGAGGCAATAACTGCAGCTGAAGCATTAGCACTCACTTTACGATTATCTGGG 180 Query 1099 AAGCTGGGAGAAGCTCTAGAACTTTTTGAAAAGTGTCTCAATGCCCGaaaaaaaTTACTT 1158 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 181 CAGCTGGGAGAAGCTCTAGAACTTTTTGAAAAGTGTCTCAATGCCCAAAAAAAATTACTT 240 Query 1159 CCAGAAGGACATATCCAGATAGGTGGAAACTTGCTGCACATCGCAAAGACATTTATGCTT 1218 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 241 CCAGAAGGACATATCCAGATAGGTGGAAACTTTCTGCACATCGCAAAGACATTTATGCTC 300 Query 1219 CAGGCTAGTCAGATGAGAAGAACTGATAACAGTGAAGCTCTATCCAAACTAGAAAAAGCA 1278 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 301 CAGGCTAGTCAGATGAGAAGAACTGATAAGAGTGAAGCTCTATCCAAACTAGAAAAAGCA 360 Query 1279 AAGAATTATCTTGAAAACTCAGCTAGGATAGC-AAAGGACGTTCTGCATAAGCTTAAAAA 1337 |||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||| Sbjct 361 AAGAATTATCTTGAAAACTCAGCTAGGATAGCGAAA-GACGTTCTGCTTAAGCTTAAAAA 419 Query 1338 CCAAAAGAGCAAAGCGCAGAAAGACGAAAAATCCAGTGCAGCTCTTAGGAATTATGAACA 1397 |||||||| ||||||||||||| ||||||| ||||||| | ||||||||||||||||||| Sbjct 420 CCAAAAGATCAAAGCGCAGAAACACGAAAAGTCCAGTGTAACTCTTAGGAATTATGAACA 479 Query 1398 CGCGGCTTTAGTCATACTGCTGCAATCTCTTGAGAGTCTTGCAGCTTTGGAGATGAGCAA 1457 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TGCGGCGTTAGTCATACTGCTGCAATCTCTTGAGAGTCTTGCAGCTTTGGAGATGAGCAA 539 Query 1458 AAATGAGATCCATGAGCCAAAGGAAGAAAATCTGCATGCAGCTGAAGATTCACTTCTCCA 1517 |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 540 AAATGAGATCCAGGAGCCAAAGGAAGAAAATCTGCATGTAGCTGAAGATTCACTTCTCCA 599 Query 1518 ATGTGTTACAGCTTACAAAGAGTTTGGTTATGGAACTCAGCTGCAAGATTCTTCTGAAGT 1577 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 600 ATGTGTTACAGCTTACAAAGAGTTTGGTTATGGAACTCAGCTGCAAGATTCTTTTGAAGT 659 Query 1578 AAAGTCAGAATACCTTTCGTGTCTTAAGCATCTCTCAGCTTTATTAGCAAAGAAAGAGAC 1637 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 AAAGTCTGAATACCTTTCGTGTCTTAAGCATCTCTCAGCTTTATTAGCAAAGAAAGAGAC 719 Query 1638 GACGCTTAACTCAAAGGCAAGTCCTATTTCTTTACCAGAGCTCAAGGAAGAAATTAAGCG 1697 ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||| Sbjct 720 GACGCTTAACTCAAAGGCAAGTCATATTTCCTTACCAGAGCTCAAGGAAGAAATTAGGCG 779 Query 1698 TATTGACATCGATCTTCGTTCACAAAAGACAGGCTAA 1734 || ||| ||||||||||||||||||||||| |||||| Sbjct 780 TACTGAAATCGATCTTCGTTCACAAAAGACTGGCTAA 816 > Ahg330293 jgi|Araly1|330293|fgenesh1_pm.C_scaffold_7002520 Length=765 Score = 1027 bits (556), Expect = 0.0 Identities = 645/686 (94%), Gaps = 13/686 (2%) Strand=Plus/Plus Query 79 ATGTCTCTGCTTCGAATTTTGTCGACTCTT-TACAAAGGAACTCATCGGACTTCACGTTC 137 |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 1 ATGTCTCTGCTTCGAATTTTGTCGACTCTTCT-CAAAGGAACTCATCGGACTTCACGTTC 59 Query 138 CTTCTCTTCTTCGCGGAATCTGATCTGCACCACTTTCGCTAATCCACTCTCCGGGAAACC 197 ||| |||||||| ||||||| |||||||||||||||||||||| ||||||||||||| || Sbjct 60 CTTTTCTTCTTCCCGGAATCCGATCTGCACCACTTTCGCTAATTCACTCTCCGGGAAGCC 119 Query 198 GA-GGATTTCGTATCAGAATGATTATGGAGGCCATAGAACAAATTTGCATCTCTTGGATT 256 | |||||||||||||||||||||||||||| |||||||| |||||| |||||||||| Sbjct 120 -ACGGATTTCGTATCAGAATGATTATGGAGGACATAGAACGAATTTGAATCTCTTGGAAC 178 Query 257 CTCGGCTTTGGATTATCTTATCTGGACAAGCTGCAATCCTTGGGTTTTGTGGGAACACTG 316 | ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 179 CGCGGCTTTGGATTATCTTTTCTGGTCAAGCTGCAATCCTTGGGTTTTGTGGGAACACTG 238 Query 317 TATTGGCAGAGGATGAGTCTATGAAGTCGAAATCTGGAGATAATATGGATGAGAGTGGCA 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 239 TATTGGCAGAGGATGAGTCTATGAAGTCGAAATCTGGAGATAATATGGATGAGA---G-- 293 Query 377 ATACTGGGCTAGAAAAAATTGAGGACGGGTCGGTTGTATCTAATATACACACATCTAAGT 436 |||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| Sbjct 294 ----TGGGCTAGAAAAAATTGAGGACGGTTCGGTTGTATCGAATATACATACATCTAAGT 349 Query 437 GGAGGGTGTTTACTGATAGTGGAAGAGATTATTTCTTTCAGGGGAAACTCGAGCCGGCTG 496 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 350 GGAGGGTGTTTACTGATAGTGGAAGAGATTATTTCTTTCAGGGGAAACTGGAGCCAGCTG 409 Query 497 AGAGACTTTTCGGTTCGGCAATACAGGAAGCTAAGGAAGGTTTTGGAGAGAAGGATCCAC 556 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 410 AGAGGCTTTTCGGTTCGGCAATACAGGAAGCTAAGGAAGGTTTTGGAGAGAAGGATCCAC 469 Query 557 ATGTTGCATCTGCATGCAACAATCTGGCAGAGTTATATAGAGTCAAGAAAGAATTCGACA 616 ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 470 ATGTTGCATCTGCTTGCAACAATCTGGCAGAGTTATATAGAGTGAAGAAAGAATTCGACA 529 Query 617 AAGCAGAGCCTTTATACCTAGAAGCTGTTAGTATCTTGGAGGAGTTCTACGGTCCTGACG 676 |||||||||| |||||| | ||||||||||||||||||||||| ||||| |||||||| | Sbjct 530 AAGCAGAGCCCTTATACTTGGAAGCTGTTAGTATCTTGGAGGATTTCTATGGTCCTGAAG 589 Query 677 ATGTGCGTGTTGGTGCTACTCTCCACAACCTTGGACAACTCTATCTTGTCCAGCGAAAAC 736 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 590 ATGTGCGTGTCGGTGCTACTCTCCACAACCTTGGACAACTCTATCTTGTCCAGCGAAAAC 649 Query 737 TTGAGGAAGCTCGTGCGTGCTATGAG 762 |||||||||||||||||||||||||| Sbjct 650 TTGAGGAAGCTCGTGCGTGCTATGAG 675 > Ahg891049 jgi|Araly1|891049|Al_scaffold_0007_3035 Length=468 Score = 169 bits (91), Expect = 8e-41 Identities = 115/126 (91%), Gaps = 4/126 (3%) Strand=Plus/Plus Query 290 CAATCC--TTGGGTTTTGTGGGAACACTGTATTGGCAGAGGATGAGTCT-ATGAAGTCGA 346 |||||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||| | Sbjct 12 CAATCCTATTGTGTTTTCTGGGAACACTGTATTGGTAGTGGATGAGTCTAAT-AAGTCAA 70 Query 347 AATCTGGAGATAATATGGATGAGAGTGGCAATACTGGGCTAGAAAAAATTGAGGACGGGT 406 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 71 AATCTGGAGATAATATGGATGAGAGTGGCAATAGTGGGCTAGAAAAAATTGAGGACGGTT 130 Query 407 CGGTTG 412 |||||| Sbjct 131 CGGTTG 136 Score = 158 bits (85), Expect = 2e-37 Identities = 99/106 (93%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 478 GGGAAACTCGAGCCGGCTGAGAGACTTTTCGGTTCGGCAATACAGGAAGCTAAGGAAGGT 537 |||||||| |||||||||||||| ||||||||||||| || ||||||||||||||||||| Sbjct 136 GGGAAACTGGAGCCGGCTGAGAGGCTTTTCGGTTCGGTAAAACAGGAAGCTAAGGAAGGT 195 Query 538 TTTGGAGAGAAGGATCCACATGTTGCATCTGCATGCAACAATCTGG 583 |||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 196 TTTGGAGAGAAGGATCCACATGTTGCCCCTGCATGTAACAATCTGG 241 Score = 119 bits (64), Expect = 8e-26 Identities = 90/101 (89%), Gaps = 7/101 (7%) Strand=Plus/Plus Query 590 TATATAGAGTCAAGAAAGAATTCGACAAAGCAGAGCC-TT-TA--T-A--CCTAGAAGCT 642 ||||||||||||||||||||||||||||||||||||| || || | | |||||||| | Sbjct 364 TATATAGAGTCAAGAAAGAATTCGACAAAGCAGAGCCCTTATACGTTATACCTAGAAGTT 423 Query 643 GTTAGTATCTTGGAGGAGTTCTACGGTCCTGACGATGTGCG 683 ||||||||||||||||| ||||| |||||||| |||||||| Sbjct 424 GTTAGTATCTTGGAGGATTTCTATGGTCCTGAAGATGTGCG 464 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68486260510 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5