BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37600.1
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947410 jgi|Araly1|947410|scaffold_703639.1 1954 0.0
Ahg475723 jgi|Araly1|475723|fgenesh2_kg.2__853__AT1G66200.1 1247 0.0
Ahg479266 jgi|Araly1|479266|fgenesh2_kg.3__1967__AT3G17820.1 798 0.0
Ahg488515 jgi|Araly1|488515|fgenesh2_kg.6__1649__AT5G16570.1 754 0.0
> Ahg947410 jgi|Araly1|947410|scaffold_703639.1
Length=1166
Score = 1954 bits (1058), Expect = 0.0
Identities = 1130/1165 (97%), Gaps = 4/1165 (0%)
Strand=Plus/Plus
Query 113 ATCAAAACACGAGACAGATTTGATTCCATTTTTATTACTGTTACTATCATCCAAACCCTT 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCAAAACACGAGACAGATTTGATTCCATTTTTATTACTGTTACTATCATCCAAACCCTT 60
Query 173 GGTATTTGTAGCCATGAGTCTTGTTTCAGATCTCATCAACCTTAACCTCTCAGAC-TCCA 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 61 GGTATTTGTAGCCATGAGTCTTGTTTCAGATCTCATCAACCTTAACCTCTCAGACATC-A 119
Query 232 CTGACAAAATCATTGCTGAATACATATGGGTTGGTGGTTCTGGAATGGACATGAGAAGCA 291
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 120 CTGACAAAATCATTGCTGAATACATATGGGTTGGTGGTTCTGGAATGGATATGAGAAGCA 179
Query 292 AAGCCAGGACTCTACCTGGACCAGTGACTGACCCTTCGCAGCTACCAAAGTGGAACTATG 351
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 180 AAGCCAGGACTCTACCTGGACCAGTGACTGACCCTTCTCAGCTACCAAAGTGGAACTATG 239
Query 352 ATGGTTCAAGCACAGGCCAAGCTCCTGGTGAAGACAGTGAAGTCATCTTATACCCTCAAG 411
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATGGTTCAAGCACTGGTCAAGCTCCTGGTGAAGACAGTGAAGTCATCTTATACCCTCAAG 299
Query 412 CCATATTCAAGGATCCTTTCCGTAGAGGAAACAACATTCTTGTCATGTGCGATGCGTACA 471
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 300 CCATATTCAAGGATCCTTTCCGTAGAGGAAACAACATTCTTGTCATGTGTGATGCTTACA 359
Query 472 CTCCCGCGGGTGAACCAATCCCGACTAACAAAAGACACGCTGCGGCTAAGGTCTTTAGCA 531
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 360 CTCCCGCGGGTGAACCAATCCCGACAAACAAAAGACACGCTGCGGCTAAGGTCTTTAGCC 419
Query 532 ACCCTGATGTTGCAGCTGAAGTGCCATGGTATGGTATTGAGCAAGAATACACTTTACTCC 591
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 420 ACCCTGATGTTGCAGCTGAAGTGCCATGGTATGGTATTGAGCAAGAGTACACTTTACTTC 479
Query 592 AGAAAGATGTGAAGTGGCCTGTTGGTTGGCCTATTGGTGGTTATCCCGGCCCTCAGGGAC 651
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 480 AGAAAGATGTGAAGTGGCCAGTTGGTTGGCCTATTGGCGGTTATCCCGGCCCTCAGGGAC 539
Query 652 CGTACTATTGCGGTATTGGAGCAGACAAATCTTTTGGCAGAGATGTTGTTGATTCTCACT 711
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 540 CGTACTATTGCGGTATTGGAGCAGACAAATCTTTTGGGAGAGATGTTGTTGATTCTCACT 599
Query 712 ACAAGGCCTGCTTATACGCTGGGATCAACATTAGTGGCATCAATGGAGAAGTCATGCCGG 771
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 600 ACAAGGCCTGCTTATACGCTGGTATCAACATTAGTGGTATCAATGGAGAAGTCATGCCGG 659
Query 772 GTCAGTGGGAGTTCCAGGTCGGTCCAGCTGTTGGTATCTCGGCTGCTGATGAAATTTGGG 831
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 660 GTCAGTGGGAGTTCCAGGTCGGTCCAGCTGTTGGTATCTCGGCCGCTGATGAAATTTGGG 719
Query 832 TCGCTCGTTACATTTTGGAGAGGATCACAGAGATTGCTGGTGTAGTGGTATCTTTTGACC 891
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 720 TCGCTCGTTACATTTTGGAGAGGATCACAGAGATTGCTGGTGTGGTGGTATCTTTCGACC 779
Query 892 CGAAACCGATTCCCGGTGACTGGAACGGTGCTGGTGCTCACTGCAACTACAGTACCAAGT 951
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 780 CGAAACCGATTCCTGGTGACTGGAATGGTGCTGGTGCTCACTGCAACTACAGTACCAAGT 839
Query 952 CAATGAGGGAAGAAGGCGGTTACGAGATCATCAAGAAAGCAATCGATAAATTGGGACTGA 1011
|||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 840 CAATGAGGGAAGAAGGGGGTTACGAGATTATCAAGAAGGCAATCGATAAATTGGGACTGA 899
Query 1012 GACACAAAGAACACATTGCTGCTTACGGTGAAGGCAATGAGCGTCGTCTCACAGGACACC 1071
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 900 GACACAAAGAACACATTGCGGCTTACGGTGAAGGCAATGAGCGTCGTCTCACTGGACACC 959
Query 1072 ACGAGACTGCTGACATCAACACTTTCCTTTGGGGTGTTGCGAACCGTGGAGCATCGATCC 1131
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ATGAGACTGCTGACATCAACACTTTCCTTTGGGGTGTTGCGAACCGTGGAGCATCGATCC 1019
Query 1132 GAGTAGGACGTGATACGGAGAAAGAAGGGAAAGGATACTTTGAGGACAGGAGGCCAGCTT 1191
| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GTGTAGGACGTGACACCGAGAAAGAAGGGAAAGGATACTTTGAGGACAGGAGGCCAGCTT 1079
Query 1192 CGAACATGGATCCTTACATTGTCACTTCCATGATTGCAGAGACTACAATCCTCTGGAATC 1251
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1080 CGAACATGGACCCTTACATTGTCACTTCCATGATTGCAGAGACCACAATCCTCTGGAATC 1139
Query 1252 CTTGATGATCATCAGATCAAGAAAA 1276
||||||||||| ||||||||||||
Sbjct 1140 CTTGATGATCA--AGATCAAGAAAA 1162
> Ahg475723 jgi|Araly1|475723|fgenesh2_kg.2__853__AT1G66200.1
Length=1429
Score = 1247 bits (675), Expect = 0.0
Identities = 950/1085 (88%), Gaps = 10/1085 (1%)
Strand=Plus/Plus
Query 177 TTTGTAGCCATGAGTCTTGTTTCAGATCTCATCAACCTTAACCTCTCAGACTCCACTGAC 236
|||| | ||||||||||| || ||||||| | |||||| ||||||||||| || |||
Sbjct 91 TTTGCAACCATGAGTCTTCTTGCAGATCTTGTTAACCTTGACCTCTCAGACAACAGTGA- 149
Query 237 AAA-ATCATTGCTGAATACATATGGGTTGGTGGTTCTGGAATGGACATGAGAAGCAAAGC 295
||| ||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 150 AAAGATCATCGCTGAATACATATGGGTTGGTGGTTCTGGTATAGACATGAGAAGCAAAGC 209
Query 296 CAGGACTCTACCTGGACCAGTGACTGACCCTTCGCAGCTACC-AAAGTGGAACTATGATG 354
|||||||||| | || || ||||| || || ||| | || || ||| |||||||||||||
Sbjct 210 CAGGACTCTATCAGGTCCTGTGACCGATCCATCGAAACTTCCGAAA-TGGAACTATGATG 268
Query 355 GTTCAAGCACAGGCCAAGCTCCTGGTGAAGACAGTGAAGTCATCTTATACCCTCAAGCCA 414
|||||||||| || |||||||||||| |||| |||||||| ||||||||||||||||| |
Sbjct 269 GTTCAAGCACTGGTCAAGCTCCTGGTAAAGATAGTGAAGTGATCTTATACCCTCAAGCGA 328
Query 415 TATTCAAGGATCCTTTCCGTAGAGGAAACAACATTCTTGTCATGTGCGATGCGTACACTC 474
| ||||| ||||| ||||||||||| |||||||||||||| ||||| ||||| |||||||
Sbjct 329 TTTTCAAAGATCCGTTCCGTAGAGGCAACAACATTCTTGTTATGTGTGATGCTTACACTC 388
Query 475 CCGCGGGTGAACCAATCCCGACTAACAAAAGACACGCTGCGGCTAAGGTCTTTAGC-AAC 533
| ||||| || |||||||| || ||||| |||| ||||| ||| || ||||| || |||
Sbjct 389 CTGCGGGCGAGCCAATCCCTACGAACAAGCGACATGCTGCAGCTGAGATCTTT-GCTAAC 447
Query 534 CCTGATGTTGCAGCTGAAGTGCCATGGTATGGTATTGAGCAAGAATACACTTTACTCCAG 593
|||| ||||| ||||||||||||||||||||| || || |||||||||||||| | |||
Sbjct 448 CCTGCTGTTGTAGCTGAAGTGCCATGGTATGGAATCGAACAAGAATACACTTTGTTGCAG 507
Query 594 AAAGATGTGAAGTGGCCTGTTGGTTGGCCTATTGGTGGTTATCCC-GGCCCTCAGGGACC 652
|| |||||||| |||||| |||| ||||| |||||||| || ||| ||||||||||||||
Sbjct 508 AAGGATGTGAACTGGCCTCTTGGATGGCCCATTGGTGGCTA-CCCTGGCCCTCAGGGACC 566
Query 653 GTACTATTGCGGTATTGGAGCAGACAAATCTTTTGGCAGAGATGTTGTTGATTCTCACTA 712
||||| ||| |||||||||| |||||||||||||| ||||| |||||||| |||||||
Sbjct 567 ATACTACTGCAGTATTGGAGCTGACAAATCTTTTGGAAGAGACATTGTTGATGCTCACTA 626
Query 713 CAAGGCCTGCTTATACGCTGGGATCAACATTAGTGGCATCAATGGAGAAGTCATGCCGGG 772
|||||| || || || ||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 627 CAAGGCTTGTTTGTATGCTGGAATCAACATCAGTGGGATCAATGGAGAAGTCATGCCGGG 686
Query 773 TCAGTGGGAGTTCCAGGTCGGTCCAGCTGTTGGTATCTCGGCTGCTGATGAAATTTGGGT 832
||||||||||||||| ||||| ||| | || |||||||| ||| |||||||| | ||| |
Sbjct 687 TCAGTGGGAGTTCCAAGTCGGCCCATCGGTCGGTATCTCAGCTTCTGATGAAGTGTGGAT 746
Query 833 CGCTCGTTACATTTTGGAGAGGATCACAGAGATTGCTGGTGTAGTGGTATCTTTTGACCC 892
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 747 CGCTCGTTACATTTTGGAGAGGATCACAGAGATTGCTGGTGTGGTTGTATCTTTTGACCC 806
Query 893 GAAACCGATTCCC-GGTGACTGGAACGGTGCTGGTGCTCACTGCAACTACAGTACCAAGT 951
|||||||| |||| ||||| |||||||| |||||||||||| |||||||||||| || |
Sbjct 807 GAAACCGA-TCCCGGGTGATTGGAACGGAGCTGGTGCTCACACCAACTACAGTACTAAAT 865
Query 952 CAATGAGGGAAGAAGGCGGTTACGAGATCATCAAGAAAGCAATCGATAAATTGGGACTGA 1011
| |||||||||||||| || |||||||| |||||||| || || || || | ||||| |
Sbjct 866 CGATGAGGGAAGAAGGAGGATACGAGATAATCAAGAAGGCGATTGAGAAGCTCGGACTAA 925
Query 1012 GACACAAAGAACACATTGCTGCTTACGGTGAAGGCAATGAGCGTCGTCTCACAGGACACC 1071
||||||| ||||||||| | |||||||||||||| || ||||| |||||||| |||||||
Sbjct 926 GACACAAGGAACACATTTCCGCTTACGGTGAAGGAAACGAGCGCCGTCTCACGGGACACC 985
Query 1072 ACGAGACTGCTGACATCAACACTTTCCTTTGGGGTGTTGCGAACCGTGGAGCATCGATCC 1131
| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 ATGAAACCGCTGACATCAACACTTTCCTTTGGGGTGTTGCGAACCGTGGAGCATCGATCC 1045
Query 1132 GAGTAGGACGTGATACGGAGAAAGAAGGGAAAGGATACTTTGAGGACAGGAGGCCAGCTT 1191
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1046 GAGTAGGACGCGATACCGAGAAAGAAGGGAAAGGATACTTTGAGGATAGGAGGCCAGCTT 1105
Query 1192 CGAACATGGATCCTTACATTGTCACTTCCATGATTGCAGAGACTACAATCCTCTGGAATC 1251
| |||||||| ||||||||||| |||||||||||||||||||||||| |||||||||| |
Sbjct 1106 CAAACATGGACCCTTACATTGTTACTTCCATGATTGCAGAGACTACACTCCTCTGGAAAC 1165
Query 1252 CTTGA 1256
|||||
Sbjct 1166 CTTGA 1170
> Ahg479266 jgi|Araly1|479266|fgenesh2_kg.3__1967__AT3G17820.1
Length=1270
Score = 798 bits (432), Expect = 0.0
Identities = 862/1067 (81%), Gaps = 40/1067 (4%)
Strand=Plus/Plus
Query 198 TCAGATCTCATCAACCTTAACCTCTCAGACTCCACTGACAAAATCATTGCTGAATACATA 257
||||||||| | ||||| |||||||| ||| |||| || |||||||| || |||||||||
Sbjct 94 TCAGATCTCGTTAACCTCAACCTCTCCGACGCCACCGAAAAAATCATCGCCGAATACATA 153
Query 258 TGGGTTGGTGGTTCTGGAATGGACATGAGAAGCAAAGCCAGGACTCTACCTGGACCAGTG 317
||| | ||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 154 TGGATCGGTGGATCTGGAATGGACATCAGAAGCAAAGCCAGGACACTACCAGGACCAGTC 213
Query 318 ACTGACCCTTCGCAGC-TACCAAAGTGGAACTATGATGGTTCAAGCACAGGCCAAGCT-C 375
||||| || || ||| | ||||| |||||||| || || || ||||| || || ||| |
Sbjct 214 ACTGATCCATCAAAGCTTCCCAAA-TGGAACTACGACGGATCCAGCACCGGTCAGGCTGC 272
Query 376 CTGGTGAAGACAGTGAAGTCA-TCTTATACCCTCAAGCCATATTCAAGGATCCTTTCCGT 434
| || |||||||||||||||| || |||||||||| || |||||||||||||| ||| |
Sbjct 273 C-GGAGAAGACAGTGAAGTCATTC-TATACCCTCAGGCGATATTCAAGGATCCATTCAGG 330
Query 435 AGAGGAAACAACATTCTTGTCATGTGCGATGCGTACACTCCCGCGGGTGAACCAATCCCG 494
| ||| |||||||| || || ||||| ||||| ||||| || || ||||| ||||| ||
Sbjct 331 AAAGGCAACAACATCCTGGTGATGTGTGATGCTTACACACCAGCTGGTGATCCAATTCCA 390
Query 495 ACTAACAAAAGACAC-GCTGCGGCTAAGGTCTTTAGCAACCCTGATGTTGCAGCTGAAGT 553
|| ||||| || ||| | || |||||| |||| ||| |||| | ||||| |||| |
Sbjct 391 ACCAACAAGAGGCACAAC-GCTGCTAAGATCTTCAGCCACCCCAACGTTGCCTCTGAGGA 449
Query 554 GCCATGGTATGGTATTGAGCAAGAATACACTTT-ACTCCAGAAA-GATGTGAAGTGGCCT 611
||| |||||||| |||||||||||||||||||| | | || ||| || ||||| |||||
Sbjct 450 GCCTTGGTATGGAATTGAGCAAGAATACACTTTGA-TGCA-AAAGGACGTGAACTGGCCA 507
Query 612 GTTGGTTGGCCTATTGGTGGTTATCCC-GGCCCTCAGGGACCGTACTATTGCGGTATTGG 670
||||||||||| ||||||||| |||| |||||||||||||| ||||| || ||| | ||
Sbjct 508 ATTGGTTGGCCTGTTGGTGGTT-TCCCTGGCCCTCAGGGACCTTACTACTGTGGTGTGGG 566
Query 671 AGCAGACAAATCTTTTGG-CAGAGATGTTGTTGATTCTCACTACAAGGCCTGCT-TATAC 728
||| |||||| | |||| | | || |||| ||| | |||||||| ||||| | | |||
Sbjct 567 AGCTGACAAAGCCATTGGTC-GTGACATTGTGGATGCACACTACAAAGCCTG-TATTTAC 624
Query 729 GCTGGGATCAACATTAGTGGCATCAATGGAGAAGTCATGCCGGGTCAGTGGGAGTTCCAG 788
|| || || |||| ||| ||||||||||||||||||| || ||||||||||||||
Sbjct 625 GCCGGTATTGGCATTTCTGGTGTCAATGGAGAAGTCATGCCTGGCCAGTGGGAGTTCCAA 684
Query 789 GTCGGTCCAGCTGTTGGTATCTCG-GCTGCTGATGAAATTTGGGTCGCTCGTTACATTTT 847
||||| || | || ||||| | | |||| |||| || | ||||| ||||| ||| || |
Sbjct 685 GTCGGCCCTGTTGAGGGTAT-TGGTGCTGGTGATCAAGTCTGGGTTGCTCGATACCTTCT 743
Query 848 GGAGAGGATCACAGAGAT-TGCTGGTGT-AGTGGT-ATCTTTTGACCCGAAACCGATTCC 904
||||||||||| ||||| | ||||||| | | || | | || ||||| ||||| | |||
Sbjct 744 CGAGAGGATCACTGAGATCT-CTGGTGTAAAT-GTCAGC-TTCGACCCAAAACC-AGTCC 799
Query 905 C-GGTGACTGGAACGGTGCTGGTGCTCACTGCAACTACAGTACCAAGTCAATGAGGGAA- 962
| ||||| |||||||| ||||| |||||||||||||||||||| ||| |||||| ||||
Sbjct 800 CGGGTGATTGGAACGGAGCTGGAGCTCACTGCAACTACAGTACTAAGACAATGA-GGAAC 858
Query 963 GAAGGCGG-TTACG-AGATCATCAAGAAAGCAATCGATAA-ATTGGGACTGAGACACAAA 1019
|| || || ||| | || | ||||||||||| || | || || | |||| |||||||
Sbjct 859 GATGGAGGATTA-GAAG-TGATCAAGAAAGCGATAGGGAAGCTTCAG-CTGAAACACAAA 915
Query 1020 GAACACATTGCTGCTTACGGTGAAGGCAATGAGCGTCGTCTCACAGGACACCACGAGACT 1079
||||||||||||||||||||||||||||| |||||||||||||| ||| | ||||| ||
Sbjct 916 GAACACATTGCTGCTTACGGTGAAGGCAACGAGCGTCGTCTCACTGGAAAGCACGAAACC 975
Query 1080 GCTGACATCAACACTTTC-CTTTGGGGTGTTGCGAACCGTGGAGCATC-GATCCGAGTAG 1137
|| ||||||||||||||| ||| |||| || || |||||||||||||| | | || | |
Sbjct 976 GCAGACATCAACACTTTCTCTT-GGGGAGTCGCAAACCGTGGAGCATCCGTTA-GAATTG 1033
Query 1138 GACGTGATACGGAGAAAGAAGGGAAAGGATACTTTGAGGACAGGAGGCCAGCTTCGAACA 1197
||||||| || ||||||||||| ||||| ||||| |||||| | ||||||||||| ||||
Sbjct 1034 GACGTGACACTGAGAAAGAAGGTAAAGGTTACTTCGAGGACCGAAGGCCAGCTTCTAACA 1093
Query 1198 TGGATCCTTACATTGTCACTTCCATGATTGCAGAGACTACAATCCTC 1244
|||||||||| |||||||||||||||| || || || || ||||||
Sbjct 1094 TGGATCCTTATGTTGTCACTTCCATGATCGCTGAAACCACCATCCTC 1140
> Ahg488515 jgi|Araly1|488515|fgenesh2_kg.6__1649__AT5G16570.1
Length=1229
Score = 754 bits (408), Expect = 0.0
Identities = 843/1053 (80%), Gaps = 30/1053 (3%)
Strand=Plus/Plus
Query 219 CTCTCAGACTCCACTGACAAAATCATTGCTGAATACATATGGGTTGGTGGTTCTGGAATG 278
||||| || ||||||||| | ||||| || || ||||||||| ||||||| || || ||
Sbjct 71 CTCTCCGATTCCACTGACCAGATCATCGCCGAGTACATATGGATTGGTGGATCGGGCTTG 130
Query 279 GACATGAGAAGCAAAGCCAGGACTCTACCTGGACCAGTGACTGACCCTTCGCAGCTACC- 337
|| |||||||||||||| |||||| | || ||||||||||| || || ||| || ||||
Sbjct 131 GATATGAGAAGCAAAGCAAGGACTTTGCCAGGACCAGTGACGGATCCATCGGAGTTACCG 190
Query 338 AAAGTGGAACTATGATGGTTCAAGCACAGGCCAAGCTCCTGGTGAAGACAGTGAAGTCAT 397
||| |||||||| || ||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 191 AAA-TGGAACTACGACGGTTCAAGCACCGGCCAAGCTCCCGGTGATGACAGTGAAGTCAT 249
Query 398 CTTATACCCTCAAGCCATATTCAAGGATCCTTTCCGTAGAGGAAACAACATTCTTGTCAT 457
| | ||||||||||| || ||||| || || ||| | ||||| |||||||| ||||| ||
Sbjct 250 CATCTACCCTCAAGCTATCTTCAAAGACCCCTTCAGAAGAGGCAACAACATCCTTGTGAT 309
Query 458 GTGCGATGCGTACACTCCCGCGGGTGAACCAATCCCGACTAACAAAAGACACGCTGCGGC 517
||| || || || || || || || || || || ||||| |||||||| || || || ||
Sbjct 310 GTGTGACGCATATACACCTGCCGGAGAGCCGATTCCGACGAACAAAAGGCATGCGGCCGC 369
Query 518 TAAGGTCTTTAGCAACCCTGA-TGTTGCAGCTGAAGTGCCATGGTATGGTATTGAGCAAG 576
|||| |||||||| ||||| | ||||| || |||| ||||||| || ||||||||||
Sbjct 370 TAAGATCTTTAGCGACCCT-AGTGTTGTTGCCGAAGAAACATGGTACGGAATTGAGCAAG 428
Query 577 AATACACTTTACTCCAGAAA-GATGTGAAGTGGCCTGTTGGTTGGCCTATTGGTGGTTAT 635
| |||||||| || || ||| ||| | |||||||| || |||||||| | || |||| |
Sbjct 429 AGTACACTTTGCTGCA-AAAGGATATTAAGTGGCCGGTAGGTTGGCCGGTCGGCGGTT-T 486
Query 636 CCC-GGCCCTCAGGGACCGTACTATTGCGGTA-TTGGAGCAGACAAATCTTTTGGCAGAG 693
||| || ||||||||||||||||| || || | |||||||||||||| | ||||| ||||
Sbjct 487 CCCAGGTCCTCAGGGACCGTACTACTGTGG-AGTTGGAGCAGACAAAGCCTTTGGAAGAG 545
Query 694 ATGTTGTTGATTCTCACTACAAGGCCTG-CTTATACGCTGGGATCAACATTAGTGGCATC 752
| | || |||||||| ||||| || || ||| ||||| || ||| | | ||||| | |
Sbjct 546 ACATCGTAGATTCTCATTACAAAGCTTGTCTT-TACGCCGGAATCGATGTCAGTGG-AAC 603
Query 753 -AATGGAGAAGTCATGCCGGGTCAGTGGGAGTTCCAGGTCGGT-CCAGCTGTTGGTATCT 810
|| || ||||| ||||| || |||||||||||||| || ||| ||| | ||||| |||
Sbjct 604 TAACGGCGAAGTGATGCCCGGCCAGTGGGAGTTCCAAGTTGGTCCCA-CCGTTGGAATCG 662
Query 811 CGGCTGCTGATGAAATTTGGGTCGCTCGTTACAT-TTTGGAGAGGATCACAGAGATT-GC 868
| || || ||| | | ||||||||||||||||| || ||||||||||||| ||| ||
Sbjct 663 CTGCCGCAGATCAGGTCTGGGTCGCTCGTTACATCCTT-CAGAGGATCACAGA-ATTGGC 720
Query 869 TGGTGTAGTGGTATCTTTTGACCCGAAACCGATTCCCGGTGACTGGAACGGTGCTGGTGC 928
||| || || | ||| ||||||| ||||| ||||| || || ||||| ||||| || ||
Sbjct 721 TGGAGTTGTTCTGTCTCTTGACCCTAAACCAATTCCGGGAGATTGGAATGGTGCAGGGGC 780
Query 929 TCACTGC-AACTACAGTACCAAGTCAATGAGGGAAGAAGGCGGTTACGAGATCATCAAGA 987
||| | || |||||||| ||||| ||||| ||||| || || |||||| |||| ||||
Sbjct 781 ACAC-ACAAATTACAGTACGAAGTCGATGAGAGAAGATGGAGGGTACGAGGTCATAAAGA 839
Query 988 AAGCAATCGATAA-ATTGGGACTGAGACACAAAGAACACATTGCTGCTTACGGTGAAGGC 1046
|||| || || || || ||| || | ||||| ||||||||||||||||| |||||||||
Sbjct 840 AAGCGATAGAGAAGCTT-GGATTGCGTCACAAGGAACACATTGCTGCTTATGGTGAAGGC 898
Query 1047 AATGAGCGTCGTCTCACAGGACACCACGAGACTGCTGACATCAACACTTTCCTT-TGGGG 1105
||||||||||||||||||||| | || ||||| || || |||||||||||| || |||||
Sbjct 899 AATGAGCGTCGTCTCACAGGAAAACATGAGACCGCCGATATCAACACTTTC-TTATGGGG 957
Query 1106 TGTTGCGAACCGTGGAGCATCGATCCGAGTAGGACGTGATACGGAGAAAGAAGGGAAAGG 1165
||| || ||||| || |||||||| | || || ||||| || ||||| | || |||||
Sbjct 958 TGTGGCAAACCGAGGGGCATCGATTAGGGTTGGGCGTGACACTGAGAAGGCTGGAAAAGG 1017
Query 1166 ATACTTTGAGGA-CAGGAGGCCAGCTTCGAACATGGATCCTTACATTGTCACTTCCATGA 1224
||||||||| || | | |||||||||||||||||||||||||||| ||| || |||||||
Sbjct 1018 ATACTTTGAAGATC-GTAGGCCAGCTTCGAACATGGATCCTTACACTGTAACCTCCATGA 1076
Query 1225 TTGCAGAGA-CTACAATCCTCTGGAATCCTTGA 1256
|||| || | | |||||||| ||||| || |||
Sbjct 1077 TTGCTGA-ATCCACAATCCTTTGGAAACCATGA 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55916479660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5