BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G37620.1

Length=1959
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg947412 jgi|Araly1|947412|scaffold_703641.1                        518    8e-146


> Ahg947412 jgi|Araly1|947412|scaffold_703641.1
Length=401

 Score =  518 bits (280),  Expect = 8e-146
 Identities = 348/381 (91%), Gaps = 3/381 (1%)
 Strand=Plus/Plus

Query  1    ATGGAAAAAATAGAGCTACCAATTCACAAACATCCTTTGTTACCTATAACTCGTTTTTTC  60
            |||||||||| |||| |||| ||||||||||||||||||||| |||||||||||||||| 
Sbjct  22   ATGGAAAAAACAGAGTTACCCATTCACAAACATCCTTTGTTAACTATAACTCGTTTTTTT  81

Query  61   TCTCGTCACGGTTGTAACGGGTGTGGCTCTGATGGTTACATTTACGGAGGCTACCATTGC  120
            ||||||| ||| |||||||| ||||| ||| |||||||||| ||||||||||||| ||||
Sbjct  82   TCTCGTCGCGGCTGTAACGGATGTGGATCTTATGGTTACATCTACGGAGGCTACCGTTGC  141

Query  121  AATGAGTTAGGCTGTGAGACTCCTGCGTTTCATAGAGAGTGTGCTGAGTCTTTACAGGAA  180
            |||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  142  AATGAGTTGGGGTGTGAGACTCCTGCGTTTCATAGAGAGTGTGCTGAGTCTTTACAAGAA  201

Query  181  ATAAAGCACTTCTCTCACCCCGATCATCCTCTTAATCTGCGCCTAAATGACAAAGCATCT  240
            ||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||
Sbjct  202  ATAAAGCACTTCTCTCATCCCGATCATCCTCTCAATCTTCGCCTAAACGACAAAGCATCT  261

Query  241  ACATGTAATCGATGTGGAATTCATCTGCTTCGAA-AAACCTATATCTATGTATGTTCAAT  299
            |||||||||||||||||||| |||||| ||  || ||| |||||||||| ||||||||||
Sbjct  262  ACATGTAATCGATGTGGAATACATCTGTTTA-AAGAAAGCTATATCTATATATGTTCAAT  320

Query  300  CTGTGACTTCAAGTTGGATTTACATTGTGCGAA-GGATGCTGCTCCACTTCCTATTCTTG  358
             ||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct  321  GTGTGACTTCAAGTTGGATTTACACTGTGCGAAAGGAAGCTGCTCCACTTCCTATTCTTG  380

Query  359  AAAACTACAATCTCCACGAGC  379
            |||||| |||| | |||||||
Sbjct  381  AAAACTCCAATGTGCACGAGC  401



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 73628443585


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5