BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37660.2
Length=1362
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493742 jgi|Araly1|493742|fgenesh2_kg.7__3175__AT5G37660.2 1738 0.0
> Ahg493742 jgi|Araly1|493742|fgenesh2_kg.7__3175__AT5G37660.2
Length=1302
Score = 1738 bits (941), Expect = 0.0
Identities = 1223/1351 (91%), Gaps = 52/1351 (4%)
Strand=Plus/Plus
Query 15 ATTGCTATTGTCTTTCTCTCCTTCTCCACTAATGCCAATGGCAAAACTAAGGAACATCAT 74
||||||| ||||||||||||||| |||| |||| ||||||||||||||||||||||||||
Sbjct 1 ATTGCTAATGTCTTTCTCTCCTTTTCCATTAATACCAATGGCAAAACTAAGGAACATCAT 60
Query 75 CAAAACTCTCTCCATCTTCTTCTTTCTCATCGCAGCAACCGCTCCTTCACTCTCCTCTGC 134
||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||| ||
Sbjct 61 CAAAACTCTCTCCTTCTTCTTCTTTCTCCTCGCCGCAACCGCTCCTTCACTCTCCTCCGC 120
Query 135 CACCTCCGCCACAGACACCTTCGTCTTTGGCGGCTGCTCCCAGCAAAAATTCTCTCCGGC 194
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 CACCTCCGCCACAGACACCTTCGTCTTCGGCGGCTGCTCCCAGCAAAAATTCTCTCCGGC 180
Query 195 GTCTGCGTATGAGTCAAACCTCAACTCTCTTCTTACTTCTCTAGTTAACTCAGCCACATA 254
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 GTCTGCTTATGAGTCAAACCTCAACTCTCTTCTCACTTCTCTAGTTAACTCAGCCACATA 240
Query 255 CTCTTCCTACAACAACTTCACCATCATGGGCTCTTCATCCTCCGACACAGCACGTGGCCT 314
||||||||||||||||||||||||||||||||||| ||||| |||||||| | ||||||
Sbjct 241 TTCTTCCTACAACAACTTCACCATCATGGGCTCTTCCTCCTCGGACACAGCCCATGGCCT 300
Query 315 CTTCCAATGCCGCGGTGACCTCTCCATGCCGGACTGCGCCACGTGTGTGGCACGTGCCGT 374
|||||||||||| || |||||||| ||||||||||| ||||||||||||| ||| |||||
Sbjct 301 CTTCCAATGCCGGGGCGACCTCTCTATGCCGGACTGTGCCACGTGTGTGGTACGAGCCGT 360
Query 375 CTCTCAAGTAGGTCCTCTTTGCCCTTTCACTTGTGGTGGAGCCCTCCAGCTAGCTGGCTG 434
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 CTCTCAAGTAGGTCCTCTTTGCCCTTTCACTTGTGGTGGAGCCCTCCAACTAGCTGGCTG 420
Query 435 CTACATCAAATACGATAACATCAGCTTCCTTGGCCAAGAAGACAAGACCGTTGTCCTAAA 494
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTACATCAAGTACGATAACATCAGCTTCCTTGGCCAAGAAGACAAGACCGTTGTCCTAAA 480
Query 495 GAAGTGTGGATCCTCTGAGGGTTATAATACCGACGGTATCAGCCGGAGAGACGCAGTTCT 554
|||||||||| |||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 481 GAAGTGTGGACCCTCTGAGGGTTATAACACCGACGGCATCAGCCGGAGAGACGCGGTTCT 540
Query 555 CACGGAGCTAGTCAATGGCGGAGGGTATTTTCGAGCCGGAGGGTCCGGTGATGTTCAAGG 614
||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 541 CACGGAGCTAGTCAACGGTGGAGGGTATTTTCGAGCTGGAGGGTCCGGTGATGTTCAAGG 600
Query 615 TATGGGACAATGTGTAGGAGATCTAACGGTGTCAGAGTGCCAAGATTGTTTAGGAACGGC 674
||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 601 TATGGGACAGTGTGTAGGAGATCTAACGGTGTCGGAGTGCCAAGATTGTCTAGGAACGGC 660
Query 675 CATTGGACGGCTTAAGAATGATTGTGGCACGGCCGTCTTCGGAGACATGTTCTTGGCTAA 734
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 661 CATCGGACGGCTTAAGAATGATTGTGGCACGGCCGTATTCGGAGACATGTTCTTGGCTAA 720
Query 735 GTGTTACGCTAGATATTCAACTGATGGTGCACAACATTACGCCAAGTCTCATAATTATAA 794
||||||||| |||||||| ||||||||||||||||| || ||||||||||||| ||||||
Sbjct 721 GTGTTACGCAAGATATTCCACTGATGGTGCACAACACTATGCCAAGTCTCATAGTTATAA 780
Query 795 AACAAACTACGGAGGAGAAAAGACGTTCGCGATCATCATAGGACTACTAGCTGCGGTTGT 854
|||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 781 AACAAACTACGGTGGAGAAAGGACATTCGCGATCATCATAGGACTACTAGCTGCGGTTGT 840
Query 855 TCTTCTAATTATCTTCCTTCTTTTCCTCAGAGGCGTTTGCAGTCGCGGAGGTGATTTCTC 914
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TCTTCTAATTATCTTCCTTCTTTTCCTCAGAGGCGTTTGCAGTCGCGGAGGTGATTTCTA 900
Query 915 TATCTTACATAGTTTTACTCTTATTTAATTTCTTTCATAATATATGGAAAATACACACAA 974
| ||||||||| ||||| | | ||||||||||||||||||||||||||||| |||||||
Sbjct 901 TTTCTTACATATTTTTA-T-T-ATTTAATTTCTTTCATAATATATGGAAAA--CACACAA 955
Query 975 AAATATCCAAAATGTTTCTTACATGCATG-GTCTCATGATAAATATACGTAGTAGTCAAT 1033
||| | || || || |||||||||| | || |||||||| ||||||| |||||||
Sbjct 956 AAA-A---AATAT-TTG-TTACATGCATATGCCTTATGATAAAGGTACGTAGCAGTCAAT 1009
Query 1034 CTGATCATAATGAAATGTTATATGTAATATGCTTCCATGTGTATCATACAGTTAGGTGGT 1093
||||| |||||||| ||||||||||||||||||| || |||||| |||| ||||||| |
Sbjct 1010 CTGATAATAATGAATTGTTATATGTAATATGCTTGCACGTGTATTTTACAATTAGGTGAT 1069
Query 1094 TATTAGTATATTCAAAGTTTTAAGTAATACTTGTTCATAAATTTAAAATTTTCAGGTAAA 1153
| |||| ||||||||||||||| ||| | | ||||| | ||||||||||||
Sbjct 1070 TGTTAGGATATTCAAAGTTTTA--TAA-A-T-----ATAAA---A---TTTTCAGGTAAA 1114
Query 1154 TAAATGTCAAAGTTCTGAAGAATCGCAAGAACGTGGATCTCAAAGGAC-CAGAAAAT-CC 1211
|||||||||||||||||| || |||||||| |||||||||||||| || || ||||| ||
Sbjct 1115 TAAATGTCAAAGTTCTGAGGATTCGCAAGAGCGTGGATCTCAAAG-ACGCA-AAAATTCC 1172
Query 1212 AGATGAGATGCATATTTGCTTTGGATTCTGTCAACGTTAtttcttttttctttttCTAAC 1271
|||||||||| |||| ||||||||||||||||| | |||| | ||||| | |
Sbjct 1173 AGATGAGATGTATATC-GCTTTGGATTCTGTCAAA---A---CTTTAAT-TTTTT-T--C 1221
Query 1272 GTTTTAAAAATTATTTTGTTTCGATTGTTGTTACATAATACTTGTGATAATAATTATTTT 1331
|||| || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 -TTTT-----TT-T---GTTTCGATTGTTGTTACATAATACTTGTGATAATAATTATTTT 1271
Query 1332 AAATGGAAAAGAGATAAGAAAAGGAAGTCTT 1362
||||| |||||||||| | ||||||||||||
Sbjct 1272 AAATGAAAAAGAGATATGGAAAGGAAGTCTT 1302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50970340029
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5