BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G37670.1

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg493744 jgi|Araly1|493744|fgenesh2_kg.7__3177__AT5G37670.1         710    0.0  


> Ahg493744 jgi|Araly1|493744|fgenesh2_kg.7__3177__AT5G37670.1
Length=482

 Score =  710 bits (384),  Expect = 0.0
 Identities = 452/485 (93%), Gaps = 3/485 (1%)
 Strand=Plus/Plus

Query  31   AAAGATAGAAGAATATGGCAGACAGAGGAATATTCTTGTATCCATTTAGAAGATTCCAAG  90
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    AAAGATTGAAGAATATGGCAGACAGAGGAATATTCTTGTATCCATTTAGAAGATTCCAAG  60

Query  91   AATGGTCAAGATCAACGGCTCTGATTGATTGGATGGAATCAAACAACTCTCATATCTTCA  150
            ||||||||||||| |||||||| |||||||||||||||||   |||||||||||||||||
Sbjct  61   AATGGTCAAGATCCACGGCTCTTATTGATTGGATGGAATCTTCCAACTCTCATATCTTCA  120

Query  151  AGATCAACGTTCCTGGTTACAACAAAGAAGACATCAAAGTACAGATTgaagaagggaatg  210
            ||||||| ||||||||||||||||| |||||||| ||||| |||||||||||||| ||||
Sbjct  121  AGATCAATGTTCCTGGTTACAACAAGGAAGACATAAAAGTGCAGATTGAAGAAGGAAATG  180

Query  211  ttttgagtataagaggagaaggaataaaggaagagaagaaggagaaTTTGGTGTGGCACG  270
            |||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |
Sbjct  181  TTTTGAGTATAAGAGGAGAAGGAATAAAGGAAGATAAGAAAGAGAATTTGGTTTGGCATG  240

Query  271  TGGCGGAGAGAGAAGCTTTTTCCGGTGGTGGAAGTGAGTTTTTGCGGCGGATTGAGTTGC  330
            |||||||||||||||||||||||||||| ||   ||||||||||||||||||||||||||
Sbjct  241  TGGCGGAGAGAGAAGCTTTTTCCGGTGGAGG---TGAGTTTTTGCGGCGGATTGAGTTGC  297

Query  331  CGGAGAATGTGAAAGTTGATCAAGTTAAAGCTTACGTGGAGAATGGTGTTCTTACAGTTG  390
            |||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||
Sbjct  298  CGGAGAATGTGAAAGTCGACCAAGTTAAAGCTTACGTGGAGAATGGTGTTCTTACTGTTG  357

Query  391  TTGTTCCTAAGGACACTTCATCGAAATCGTCTAAAGTTAGGAATGTTAATATTACTAGCA  450
            ||||||| |||||||| ||||| |||||||||||| |||| ||||||||||||||||| |
Sbjct  358  TTGTTCCCAAGGACACGTCATCCAAATCGTCTAAAATTAGAAATGTTAATATTACTAGTA  417

Query  451  AGCTTTGATGTCTAAACCGGGTTAAACCGGTTTTTGGTTTTCTTAAGATGAATAAAATTG  510
            ||||||||||||| |||||   |||||||| |||||||||||||||||||||||||||||
Sbjct  418  AGCTTTGATGTCTTAACCGAAATAAACCGGGTTTTGGTTTTCTTAAGATGAATAAAATTG  477

Query  511  GACTT  515
            |||||
Sbjct  478  GACTT  482



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18887016555


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5