BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37690.1
Length=1382
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493746 jgi|Araly1|493746|fgenesh2_kg.7__3179__AT5G37690.1 1812 0.0
> Ahg493746 jgi|Araly1|493746|fgenesh2_kg.7__3179__AT5G37690.1
Length=1235
Score = 1812 bits (981), Expect = 0.0
Identities = 1122/1190 (94%), Gaps = 10/1190 (1%)
Strand=Plus/Plus
Query 1 GTCCAAATTAGAGAATAAGTAAC---TCAAGAAGGAGTGAAATCAACACAAAACACAATG 57
||||||||||||||| ||||||| ||||||| |||||||||| ||| |||||||||||
Sbjct 1 GTCCAAATTAGAGAACAAGTAACTGATCAAGAAAGAGTGAAATCCACATAAAACACAATG 60
Query 58 ATGATCCTTAGGCTGGCTCTAGCCATCGTCATCTCCACCTATGCAACCGCACAACCAGCA 117
|||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 61 ATGATCCTAAGGCTGGCTCTAGCCATCATCATCTCCGCCTATGCAACCGCACAACCAGCC 120
Query 118 TCAACATCGTCGCTTGTAACCTATATATTCGGCGACTCGCTAACCGAAGTTGGTAACAAC 177
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCAACGTCGTCGCTTGTAACCTATATATTCGGCGACTCGCTAACCGAAGTTGGTAACAAC 180
Query 178 AATT-TCTTGCAATATTCGCTAGCAAGAGCAGACTTTCCATATTATGGAGTTGATTTCTC 236
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AATTAT-TTGCAATATTCGCTAGCAAGAGCAGACTTTCCATATTATGGAGTTGATTTCTC 239
Query 237 CGGTGGTAAAGCTACCGGAAGATTCACCAACGGTAGAACTATCGGCGATATCATATCTAC 296
|| ||||||| |||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 240 TGGCGGTAAAGTTACCGGAAGATTCACCAACGGTCGGACTATCGGCGATATCATATCTAC 299
Query 297 GAAGCTCGGGATTCTATCGCCACCACCATATCTATCGTTATCACAAAACGACGATGCATT 356
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AAAGCTTGGGATTCCATCGCCACCACCATATCTATCGTTATCACAAAACGACGATGCATT 359
Query 357 TCTCAGTGGTATAAATTACGCATCTGGAGGAGCTGGAATTCTCAATGAAACTGGCATTTA 416
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 TCTCAGTGGTATTAATTACGCATCCGGAGGAGCTGGAATTCTCAATGAAACTGGCATTTA 419
Query 417 CTTCATCCAAAGGCTAACTTTCAATGATCAAATAAATTGTTTCAAGAAAACTAAAGAAGT 476
||| ||||||||||| || |||||||||||||||||||||||||||||| ||||||||||
Sbjct 420 CTTTATCCAAAGGCTGACGTTCAATGATCAAATAAATTGTTTCAAGAAATCTAAAGAAGT 479
Query 477 TATTAGGGCGAAAATCGGAGATGGAGCTGCGAACAAGCATGTAAATGATGCCATGTACTT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TATTAGGGCGAAAATCGGAGATGGAGCTGCGAACAAGCATGTAAATGATGCCATGTACTT 539
Query 537 CATTGGTTTGGGAAGCAACGATTATGTAAACAATTTCTTGCAGCCATTTATGGCAGATGG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CATTGGTTTGGGAAGCAACGATTATGTAAACAATTTCTTGCAGCCATTTATGGCAGATGG 599
Query 597 GCAGCAATATACACATGACGAGTTTGTCGAACTCTTGACCTCAACCCTACACAATCAGCT 656
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 600 GCAGCAATATACACATGACGAGTTTGTCGAACTCTTGACCTCAACCCTAGACAATCAGCT 659
Query 657 TACGACAATATACAAATTAGGAGCGAGGAAGGTAATATTTCATGGGTTAGGCCCATTGGG 716
|||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||
Sbjct 660 TACGACAATATACAAATTAGGAGCGAGGAAAGTAATATTTCATGGGCTAGGTCCATTGGG 719
Query 717 CTGTATCCCATCACAGAGAGTGAAGTCAAAGACACGCATGTGCCTGAACCGTGTCAACGA 776
||||||||||||||| ||||||||||| |||||| |||||||||| || |||||||||||
Sbjct 720 CTGTATCCCATCACAAAGAGTGAAGTCGAAGACAGGCATGTGCCTTAAGCGTGTCAACGA 779
Query 777 ATGGGTATTGGAATTCAATTCAAGAACGAAGAAGCTA-TTAATAGATCTCAACAAACGCC 835
||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 780 GTGGGTATTGGAATTCAACTCAAGAACGAAGAAGCTTCTTC-TAGATCTCAACAAACGCC 838
Query 836 TCCCCGGAGCTAAATTCTCTTTCGCAGACACTTATCCCGCCGTTCTCGATCTCATCAACA 895
| ||||||||||||||| | ||||| || |||||||| ||||||||||| ||||||||||
Sbjct 839 TTCCCGGAGCTAAATTCGCCTTCGCCGATACTTATCCTGCCGTTCTCGACCTCATCAACA 898
Query 896 ATCCCACTCACTACGGATTTAAGATAGCAAACACGTCATGTTGCAATGTGGACACAAGTG 955
|||| ||||||||||| ||||||||| |||||||||| |||||||||||||| |||||||
Sbjct 899 ATCCTACTCACTACGGGTTTAAGATATCAAACACGTCGTGTTGCAATGTGGATACAAGTG 958
Query 956 TTGGAGGTCTTTGTCTTCCCAATTCCAAGATGTGTAAAAACCGTCAAGACTTTGTCTTCT 1015
||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||
Sbjct 959 TTGGAGGTCTTTGTCTTCCCAATTCTAAGATGTGTAAAAATCGTGAAGACTTTGTCTTCT 1018
Query 1016 GGGACGCATTTCATCCGTCCGATTCGGCTAATCAAATCCTAGCCGATCAtcttttctctt 1075
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1019 GGGACGCATTTCATCCGTCCGATTCGGCTAATCAAATCCTAGCCGATCATCTTTTCTCCT 1078
Query 1076 ctcttctttcttcctcttctccttctcCTGCTCCTAAACCACGTCAATAGTTTAGCATTT 1135
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||
Sbjct 1079 CTCTTCTTTCTTCCTCTTCTCCTTCTCCTGCTCCTAAACCACGTCATTAGTATAGTATTT 1138
Query 1136 ACAAAAATAAAAACAGTTAA-CCAATTT-TTGTTAAATTGGACCTACTTG 1183
||||||||||||| | |||| |||| || |||||||||||| ||||||||
Sbjct 1139 ACAAAAATAAAAATA-TTAAACCAACTTCTTGTTAAATTGGTCCTACTTG 1187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51732798369
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5