BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G37690.1 Length=1382 Score E Sequences producing significant alignments: (Bits) Value Ahg493746 jgi|Araly1|493746|fgenesh2_kg.7__3179__AT5G37690.1 1812 0.0 > Ahg493746 jgi|Araly1|493746|fgenesh2_kg.7__3179__AT5G37690.1 Length=1235 Score = 1812 bits (981), Expect = 0.0 Identities = 1122/1190 (94%), Gaps = 10/1190 (1%) Strand=Plus/Plus Query 1 GTCCAAATTAGAGAATAAGTAAC---TCAAGAAGGAGTGAAATCAACACAAAACACAATG 57 ||||||||||||||| ||||||| ||||||| |||||||||| ||| ||||||||||| Sbjct 1 GTCCAAATTAGAGAACAAGTAACTGATCAAGAAAGAGTGAAATCCACATAAAACACAATG 60 Query 58 ATGATCCTTAGGCTGGCTCTAGCCATCGTCATCTCCACCTATGCAACCGCACAACCAGCA 117 |||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 61 ATGATCCTAAGGCTGGCTCTAGCCATCATCATCTCCGCCTATGCAACCGCACAACCAGCC 120 Query 118 TCAACATCGTCGCTTGTAACCTATATATTCGGCGACTCGCTAACCGAAGTTGGTAACAAC 177 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCAACGTCGTCGCTTGTAACCTATATATTCGGCGACTCGCTAACCGAAGTTGGTAACAAC 180 Query 178 AATT-TCTTGCAATATTCGCTAGCAAGAGCAGACTTTCCATATTATGGAGTTGATTTCTC 236 |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AATTAT-TTGCAATATTCGCTAGCAAGAGCAGACTTTCCATATTATGGAGTTGATTTCTC 239 Query 237 CGGTGGTAAAGCTACCGGAAGATTCACCAACGGTAGAACTATCGGCGATATCATATCTAC 296 || ||||||| |||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 240 TGGCGGTAAAGTTACCGGAAGATTCACCAACGGTCGGACTATCGGCGATATCATATCTAC 299 Query 297 GAAGCTCGGGATTCTATCGCCACCACCATATCTATCGTTATCACAAAACGACGATGCATT 356 ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 AAAGCTTGGGATTCCATCGCCACCACCATATCTATCGTTATCACAAAACGACGATGCATT 359 Query 357 TCTCAGTGGTATAAATTACGCATCTGGAGGAGCTGGAATTCTCAATGAAACTGGCATTTA 416 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 360 TCTCAGTGGTATTAATTACGCATCCGGAGGAGCTGGAATTCTCAATGAAACTGGCATTTA 419 Query 417 CTTCATCCAAAGGCTAACTTTCAATGATCAAATAAATTGTTTCAAGAAAACTAAAGAAGT 476 ||| ||||||||||| || |||||||||||||||||||||||||||||| |||||||||| Sbjct 420 CTTTATCCAAAGGCTGACGTTCAATGATCAAATAAATTGTTTCAAGAAATCTAAAGAAGT 479 Query 477 TATTAGGGCGAAAATCGGAGATGGAGCTGCGAACAAGCATGTAAATGATGCCATGTACTT 536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TATTAGGGCGAAAATCGGAGATGGAGCTGCGAACAAGCATGTAAATGATGCCATGTACTT 539 Query 537 CATTGGTTTGGGAAGCAACGATTATGTAAACAATTTCTTGCAGCCATTTATGGCAGATGG 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 CATTGGTTTGGGAAGCAACGATTATGTAAACAATTTCTTGCAGCCATTTATGGCAGATGG 599 Query 597 GCAGCAATATACACATGACGAGTTTGTCGAACTCTTGACCTCAACCCTACACAATCAGCT 656 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 600 GCAGCAATATACACATGACGAGTTTGTCGAACTCTTGACCTCAACCCTAGACAATCAGCT 659 Query 657 TACGACAATATACAAATTAGGAGCGAGGAAGGTAATATTTCATGGGTTAGGCCCATTGGG 716 |||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| Sbjct 660 TACGACAATATACAAATTAGGAGCGAGGAAAGTAATATTTCATGGGCTAGGTCCATTGGG 719 Query 717 CTGTATCCCATCACAGAGAGTGAAGTCAAAGACACGCATGTGCCTGAACCGTGTCAACGA 776 ||||||||||||||| ||||||||||| |||||| |||||||||| || ||||||||||| Sbjct 720 CTGTATCCCATCACAAAGAGTGAAGTCGAAGACAGGCATGTGCCTTAAGCGTGTCAACGA 779 Query 777 ATGGGTATTGGAATTCAATTCAAGAACGAAGAAGCTA-TTAATAGATCTCAACAAACGCC 835 ||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| Sbjct 780 GTGGGTATTGGAATTCAACTCAAGAACGAAGAAGCTTCTTC-TAGATCTCAACAAACGCC 838 Query 836 TCCCCGGAGCTAAATTCTCTTTCGCAGACACTTATCCCGCCGTTCTCGATCTCATCAACA 895 | ||||||||||||||| | ||||| || |||||||| ||||||||||| |||||||||| Sbjct 839 TTCCCGGAGCTAAATTCGCCTTCGCCGATACTTATCCTGCCGTTCTCGACCTCATCAACA 898 Query 896 ATCCCACTCACTACGGATTTAAGATAGCAAACACGTCATGTTGCAATGTGGACACAAGTG 955 |||| ||||||||||| ||||||||| |||||||||| |||||||||||||| ||||||| Sbjct 899 ATCCTACTCACTACGGGTTTAAGATATCAAACACGTCGTGTTGCAATGTGGATACAAGTG 958 Query 956 TTGGAGGTCTTTGTCTTCCCAATTCCAAGATGTGTAAAAACCGTCAAGACTTTGTCTTCT 1015 ||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||| Sbjct 959 TTGGAGGTCTTTGTCTTCCCAATTCTAAGATGTGTAAAAATCGTGAAGACTTTGTCTTCT 1018 Query 1016 GGGACGCATTTCATCCGTCCGATTCGGCTAATCAAATCCTAGCCGATCAtcttttctctt 1075 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1019 GGGACGCATTTCATCCGTCCGATTCGGCTAATCAAATCCTAGCCGATCATCTTTTCTCCT 1078 Query 1076 ctcttctttcttcctcttctccttctcCTGCTCCTAAACCACGTCAATAGTTTAGCATTT 1135 |||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||| Sbjct 1079 CTCTTCTTTCTTCCTCTTCTCCTTCTCCTGCTCCTAAACCACGTCATTAGTATAGTATTT 1138 Query 1136 ACAAAAATAAAAACAGTTAA-CCAATTT-TTGTTAAATTGGACCTACTTG 1183 ||||||||||||| | |||| |||| || |||||||||||| |||||||| Sbjct 1139 ACAAAAATAAAAATA-TTAAACCAACTTCTTGTTAAATTGGTCCTACTTG 1187 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51732798369 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5