BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37710.1
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493749 jgi|Araly1|493749|fgenesh2_kg.7__3182__AT5G37710.1 1995 0.0
> Ahg493749 jgi|Araly1|493749|fgenesh2_kg.7__3182__AT5G37710.1
Length=1311
Score = 1995 bits (1080), Expect = 0.0
Identities = 1235/1312 (94%), Gaps = 2/1312 (0%)
Strand=Plus/Plus
Query 1 ATGTCAGTAGCTTGTGGACTAGAATGTGTCTTCTGTGTAGGATTCAGTAGATGGGCATGG 60
||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||
Sbjct 1 ATGTCAGTAGCTTGTGGACTAGAATGTGTCTTCTGCGTCGGATTCAGTCGATGGGCATGG 60
Query 61 AAACGATGCACACACGTAGGCTCAGACGATAGCGCCACGTGGACATCAGCAACACCGGAA 120
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 61 AAACGATGCACACACGTAGGCTCCGACGATAGTGCCACGTGGACATCAGCAACACCTGAA 120
Query 121 GAATTCGAACCAATCCCAAGAATCAGCCGAGTAATCCTCGCCGTCTACGAACCCGATCTC 180
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 GAATTCGAACCAATCCCAAGAATCAGCCGTGTAATCCTCGCCGTCTACGAACCCGATCTA 180
Query 181 AGAAACCCTAAAATCTCACCTTCGTTAGGAACTTTCGATCTAAACCCTGAATGGGTCATC 240
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 181 AGAAACCCTAAAATCTCACCTTCATTAGGAACTTTCGATCTAAACCCTGACTGGGTCATC 240
Query 241 AAACGTGTGACACACGAAAAAACCCAAGGAAGATCTCCACCGTACATTATCTACATAGAT 300
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 241 AAACGTGTGACACACGAAAAAACCCTAGGAAGATCTCCACCGTACATAATCTACATAGAT 300
Query 301 CACGACCACCGTGAGATTGTTTTAGCGATTCGTGGCTTGAACTTAGCTAAAGAGAGTGAT 360
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 CACAACCACCGTGAGATTGTTTTAGCGATTCGTGGTTTGAACTTAGCTAAAGAGAGTGAT 360
Query 361 TACAAGATTCTGTTAGATAACAAATTAGGTCAGAAAATGCTTGGTGGTGGTTAT-GTGCA 419
||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 361 TACAAGATTCTTTTAGATAACAAATTAGGTCAGAAAATGCTTGGTGGTGGTT-TCGTGCA 419
Query 420 TCGTGGGTTGTTGAAATCTGCGGCTTGGGTTTTGAATCAAGAATCTGAGACTCTTTGGAG 479
||||||||| ||||||||||| |||||||||||||||||||||||||| || ||| ||||
Sbjct 420 TCGTGGGTTATTGAAATCTGCTGCTTGGGTTTTGAATCAAGAATCTGAAACACTTAGGAG 479
Query 480 AGTTTGGGAAGAGAATGGTAGAGAGTATGATTTGGTTTTTGCTGGTCATTCTTTGGGTTC 539
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGTTTGGGAAGAGAATGGTAAAGAGTATGATTTGGTTTTTGCTGGTCATTCTTTGGGTTC 539
Query 540 TGGTGTTGCGGCGTTGATGGCGGTTTTGGTTGTTAATACTCCGGCGATGATTGGTGATAT 599
||||||||| || ||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 540 TGGTGTTGCTGCTTTGATGGCGGTTTTGGTTGTTAATAATCCGGAGATGATTGGTGGTAT 599
Query 600 TCCGAGGAATAAGGTTCGATGTTTTGCTTTGGCTCCGGCGAGATGTATGTCGCTTAATCT 659
|||||||| |||| |||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 600 TCCGAGGAGTAAGATTCGGTGTTTTGCTTTAGCTCCGGCGAGATGTATGTCGCTTAATCT 659
Query 660 CGCCGTTAAGTATGCTGACGTCATCTCCTCCGTCATTTTGCAGGATGATTTTTTACCGAG 719
|||||||||||||||||||||||||| ||| || ||||| ||||||||||||||||| ||
Sbjct 660 CGCCGTTAAGTATGCTGACGTCATCTTCTCTGTTATTTTACAGGATGATTTTTTACCAAG 719
Query 720 AACAGCGACACCATTAGAGGATATATTCAAGTCTGTATTCTGCTTGCCGTGCTTGTTGTT 779
||| |||||||| || |||||||| |||||||| |||||||| ||||| |||||||||||
Sbjct 720 AACGGCGACACCGTTGGAGGATATTTTCAAGTCCGTATTCTGTTTGCCTTGCTTGTTGTT 779
Query 780 TCTAGTTTGTCTGAGGGATACATTTATACCGGAAGGTCGGAAACTAAGAGATCCTAGAAG 839
| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 780 TTTAGTTTGTTTGAGGGATACATTTATACCCGAAGGTCGGAAACTAAGAGATCCTAGAAG 839
Query 840 GCTTTATGCTCCTGGTCGAATTTATCATATCGTTGAGCGGAAATTTTGCAGGTTTCCTCC 899
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 840 ACTTTATGCTCCTGGTCGAATTTATCATATCGTTGAGCGAAAATTTTGCAGGTTTCCTCC 899
Query 900 CGAAGTGAGAACCGCGATTCCCGTTGATGGTAGATTTGAGCATATAGTATTATCATCGAA 959
||||||||||| || |||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 900 TGAAGTGAGAACGGCAATTCCCGTGGATGGTAGATTTGAACATATTGTATTATCATCGAA 959
Query 960 TGCAACATCGGATCATGCGATTCTATGGATAGAAAGAGAAGCAGAAAAGGCATTGCAGAT 1019
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 960 TGCAACATCGGATCATGCGATTCTATGGATAGAAAGAGAAGCCGAAAAGGCATTGCAGAT 1019
Query 1020 ATTGAGAGAGAAGAGTTCAGAGACAGTGGTAACAATGGCACCAAAAGAGAAGAGAATGGA 1079
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1020 ATTGAGAGAGAAGAGTTCAGAGACAGTGGTAACAATGCCACCAAAAGAAAAGAGAATGGA 1079
Query 1080 GAGGTTAAGTACTTTAGAGAAAGAGCACAAAGATGCGTTGGAGAGAGCCGTGAGTCTTAA 1139
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1080 GAGGTTAAACACTTTAGAGAAAGAGCACAAAGATGCGTTGGAGAGAGCGGTGAGTCTCAA 1139
Query 1140 TATCCCACACGCAGTGTCCACCGCGGAAGAAGAAGAAGAATGCAACAATGGAGAAGCATC 1199
||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1140 TATCCCACACGCATTGTCCACCGCTGAAGAAGAAGAAGAATGTAACAATGGAGAAGCATC 1199
Query 1200 CGCGGAGTTGAAAACAAAGAAGAAGAATTGGGATGAAGTTGTGGACAAGCTTTTCCATCG 1259
|| |||| ||||| |||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 1200 GGCAGAGTCAAAAACGAAGAAGAAGAATTGGGATGATGTGGTGGAAAAGCTTTTCCATCG 1259
Query 1260 AAGCAATTCAGGAGAATTCGTTCTCAACGATAACGTTGTTCCTGAAAGGTAG 1311
|||| |||| |||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1260 AAGCGATTCCGGAGAATTCGTTTTCAACGATAACTTTGTTCCTGAAAGGTAG 1311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49026071262
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5