BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37720.1
Length=1215
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493750 jgi|Araly1|493750|fgenesh2_kg.7__3183__AT5G37720.2 1332 0.0
> Ahg493750 jgi|Araly1|493750|fgenesh2_kg.7__3183__AT5G37720.2
Length=950
Score = 1332 bits (721), Expect = 0.0
Identities = 896/974 (92%), Gaps = 38/974 (4%)
Strand=Plus/Plus
Query 82 ctccatcttcttcaatctctctctcgttcggattctca-tctcttcttctGGTTTCAGAT 140
||| ||| || || |||| ||||||||||||||||| | | |||||||||| ||||||||
Sbjct 8 CTCAATC-TC-TCCATCT-TCTCTCGTTCGGATTCT-ACTGTCTTCTTCTGTTTTCAGAT 63
Query 141 TGAGTCTTGTTACTGTGTTTCATAAGACTATTGAAGTTAAGATGTCTGGAGCATTGAATA 200
| |||||||||||||||||||||||||| |||| |||||||||||| || || |||||||
Sbjct 64 TCAGTCTTGTTACTGTGTTTCATAAGACAATTGGAGTTAAGATGTCGGGTGCTTTGAATA 123
Query 201 TGACTCTTGATGAGATTGTTAAGAGGGGTAAAACTGCAAGGTCTGGGGGAAGAGG-GATT 259
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||
Sbjct 124 TGACTCTTGATGAGATCGTTAAGAGGGGTAAGACTGCAAGGTCTGGGGGAAGAGGAAATT 183
Query 260 -TC-TCGTGGGCGTGGTCGTGGACGTGGTGGTGGTGGAAGAGGAGCTGGACCTGCTAGAA 317
|| || ||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 184 CTCGTCCTGGGCGTGGTCGTGGCCGTGGTGGTGGTGGAAGAGGAGCTGGACCTGCTCGAA 243
Query 318 GAGGTCCTCTTGCTGTGAATGCTCGTCCATCATCTTTCACCATTAACAAGCCTGTCCGTA 377
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 244 GAGGTCCTCTTGCTGTGAATGCTCGCCCATCATCTTTCTCCATTAACAAGCCTGTCCGTA 303
Query 378 GGGTCAGGAGCTTGCCATGGCAAAGCGGTTTGTTTGAAGATGGCCTAAGAGCTGCCGGGG 437
||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||
Sbjct 304 GGGTCAGGAGCTTGCCATGGCAAAGTGGTTTGTTTGAAGATGGCTTAAGAGCTGCTGGGG 363
Query 438 CATCAGGAGTTGAAGTTGGAACCAGGCTCCATGTTACAAATCTGGACCAGGGTGTGACAA 497
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 364 TATCAGGAGTTGAAGTTGGAACCAGACTCCATGTTACAAATCTGGACCAGGGTGTGACAA 423
Query 498 ATGAAGATATAAGGGAACTCTTCTCTGAGATTGGGGAGGTAGAGCGTTATGCGATTCATT 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 ATGAAGATATAAGGGAACTCTTCTCTGAGATTGGGGAGGTAGAGCGTTATGCGATTCATT 483
Query 558 ATGACAAAAATGGGCGTCCAAGTGGCACAGCTGAAGTGGTGTATCCAAGAAGAAGTGATG 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 ATGACAAAAATGGGCGTCCAAGTGGCACAGCTGAAGTGGTGTATCCAAGAAGAAGTGATG 543
Query 618 CATTTCAAGCTCTGAAGAAATATAACAATGTGCTATTGGATGGAAGGCCAATGAGACTTG 677
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 544 CATTTCAAGCTCTGAAGAAATATAACAATGTATTATTGGATGGAAGGCCAATGAGACTTG 603
Query 678 AGATTTTGGGTGGCAACAATTCTTCCGAGGCTCCTTTATCTGGTCGTGTGAATGTGAATG 737
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 604 AGATTTTGGGTGGCAACAATTC--C-GAGGCTCCTTTATCTGGTCGTGTGAATGTGAATG 660
Query 738 TCACTGGACTCAATGGAAGGCTGAAGAGGACGGTTGTTATCCAACAaggaggaggaggga 797
||||||| ||||| ||||||||||||||||| |||||||||||| | || ||| |
Sbjct 661 TCACTGGTCTCAACGGAAGGCTGAAGAGGACTGTTGTTATCCAA---GTT--AG-AGG-A 713
Query 798 gaggaagagttagaggtgggagaggaggaagaggTCCAGCTCCTACTGTCAGTCGCCGCC 857
| ||| ||| |||| | || ||| ||||||||||||| ||||||| ||||
Sbjct 714 G-GGA-GAG---GAGG----A-AG-AGG------TCCAGCTCCTACTATCAGTCGTCGCC 756
Query 858 TTCCAATTCATAACCAGCAGGGAGGAGGGATGAGAGGAGGAAGAGGCGGGTTTCGTGCTA 917
||||||||||||||||||||||||| | |||||||| ||||||||||||||||||| ||
Sbjct 757 TTCCAATTCATAACCAGCAGGGAGG-G--ATGAGAGGGGGAAGAGGCGGGTTTCGTGGTA 813
Query 918 GAGGGCGTGGTAATGGTGGCCGTGGTCGTGGTGGTGGAAGAGGAAATGGAAAGAAGCCAG 977
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 GAGGGCGTGGTGGTGGCGGCCGTGGTCGTGGTGGTGGAAGAGGAAATGGAAAGAAGCCAG 873
Query 978 TGGAGAAGTCAGCTGCTGATCTTGACAAAGATCTTGAGAGCTATCACGCTGATGCCATGA 1037
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 874 TGGAAAAGTCAGCTGCTGATCTTGACAAGGATCTTGAGAGCTATCACGCTGATGCTATGA 933
Query 1038 ACACCTCTTAAATC 1051
||||||||||||||
Sbjct 934 ACACCTCTTAAATC 947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45366271230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5