BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G37730.1 Length=690 Score E Sequences producing significant alignments: (Bits) Value Ahg891384 jgi|Araly1|891384|Al_scaffold_0007_3370 466 1e-130 > Ahg891384 jgi|Araly1|891384|Al_scaffold_0007_3370 Length=366 Score = 466 bits (252), Expect = 1e-130 Identities = 331/369 (90%), Gaps = 5/369 (1%) Strand=Plus/Plus Query 64 atgaaaaggaagaataaaaagTTATTGGTGAGTGTGAATGTTCTTGGAAGTGTTGGTCCT 123 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAAAGGGAAGAATAAAAAGTTGTTGGTGAGTGTGAATGTTCTTGGAAGTGTTGGTCCT 60 Query 124 ATAAGGTTTTTGGCCAACGAAGACGATGAAGTTTCAAGTGCTATTAACACAACTTTGAAA 183 ||||| ||| |||| ||||| |||||||||||||||| || ||||||||||||||||||| Sbjct 61 ATAAGATTTCTGGCAAACGAGGACGATGAAGTTTCAAATGTTATTAACACAACTTTGAAA 120 Query 184 GCCTATGCTCGTCAAGGCAGGATCCCGGTTCTAGGGTTTGATGTCGACAACTTCATTTTC 243 ||||||||||||||||| ||||||||||||||||| || |||||||| |||||||||||| Sbjct 121 GCCTATGCTCGTCAAGGAAGGATCCCGGTTCTAGGATTCGATGTCGATAACTTCATTTTC 180 Query 244 TACTCCATTAATGCCGGATTCAACACTTTGCATCCACAAGAGAAGATAGGTTCAATGGAT 303 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 181 TACTCCATTAATGCCGGATTCAACACTTTAAATCCACAAGAGAAGATAGGTTCAATGGAT 240 Query 304 GTAACAAATTTCTTGATGTGCAAGAAAGAGCCACGGCCACTGGAGAAAGTCGAAGGTATA 363 | ||| ||||||||| ||||||| ||||||||| |||| || ||||||||| | | | Sbjct 241 GAAACGAATTTCTTGCTGTGCAAAAAAGAGCCAAATCCACAAGAAAAAGTCGAAAGAAGA 300 Query 364 AGAGAGAGTAGAGCTCGGATAGGCCATGGATGGAAAACTAC-TCATCTTCTTCGGTTTTT 422 ||||||||| |||| ||||||||||||||||||||||| | | | ||||||||| || Sbjct 301 GGAGAGAGTAAAGCTTGGATAGGCCATGGATGGAAAACT-CGT--T-TTCTTCGGTCCTT 356 Query 423 ATTAGGATA 431 |||| |||| Sbjct 357 ATTACGATA 365 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25351739805 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5