BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G37730.1

Length=690
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg891384 jgi|Araly1|891384|Al_scaffold_0007_3370                    466    1e-130


> Ahg891384 jgi|Araly1|891384|Al_scaffold_0007_3370
Length=366

 Score =  466 bits (252),  Expect = 1e-130
 Identities = 331/369 (90%), Gaps = 5/369 (1%)
 Strand=Plus/Plus

Query  64   atgaaaaggaagaataaaaagTTATTGGTGAGTGTGAATGTTCTTGGAAGTGTTGGTCCT  123
            |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAAAGGGAAGAATAAAAAGTTGTTGGTGAGTGTGAATGTTCTTGGAAGTGTTGGTCCT  60

Query  124  ATAAGGTTTTTGGCCAACGAAGACGATGAAGTTTCAAGTGCTATTAACACAACTTTGAAA  183
            ||||| ||| |||| ||||| |||||||||||||||| || |||||||||||||||||||
Sbjct  61   ATAAGATTTCTGGCAAACGAGGACGATGAAGTTTCAAATGTTATTAACACAACTTTGAAA  120

Query  184  GCCTATGCTCGTCAAGGCAGGATCCCGGTTCTAGGGTTTGATGTCGACAACTTCATTTTC  243
            ||||||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||
Sbjct  121  GCCTATGCTCGTCAAGGAAGGATCCCGGTTCTAGGATTCGATGTCGATAACTTCATTTTC  180

Query  244  TACTCCATTAATGCCGGATTCAACACTTTGCATCCACAAGAGAAGATAGGTTCAATGGAT  303
            |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct  181  TACTCCATTAATGCCGGATTCAACACTTTAAATCCACAAGAGAAGATAGGTTCAATGGAT  240

Query  304  GTAACAAATTTCTTGATGTGCAAGAAAGAGCCACGGCCACTGGAGAAAGTCGAAGGTATA  363
            | ||| ||||||||| ||||||| |||||||||   ||||  || ||||||||| | | |
Sbjct  241  GAAACGAATTTCTTGCTGTGCAAAAAAGAGCCAAATCCACAAGAAAAAGTCGAAAGAAGA  300

Query  364  AGAGAGAGTAGAGCTCGGATAGGCCATGGATGGAAAACTAC-TCATCTTCTTCGGTTTTT  422
             ||||||||| |||| ||||||||||||||||||||||| | |  | |||||||||  ||
Sbjct  301  GGAGAGAGTAAAGCTTGGATAGGCCATGGATGGAAAACT-CGT--T-TTCTTCGGTCCTT  356

Query  423  ATTAGGATA  431
            |||| ||||
Sbjct  357  ATTACGATA  365



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25351739805


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5