BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G37740.2

Length=767
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg330308 jgi|Araly1|330308|fgenesh1_pm.C_scaffold_7002535           617    3e-176


> Ahg330308 jgi|Araly1|330308|fgenesh1_pm.C_scaffold_7002535
Length=507

 Score =  617 bits (334),  Expect = 3e-176
 Identities = 378/399 (95%), Gaps = 4/399 (1%)
 Strand=Plus/Plus

Query  240  GAAGTTGAAAACACGCGTGGTGAAACATAGTGTAAACCCCGAGTGGAACGACGACTTGAC  299
            |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  111  GAAGCTGAAAACACGCGTGGTGAAACACAGTGTAAACCCCGAGTGGAACGACGACTTGAC  170

Query  300  ACTTTCCGTGACTGATCCGAATCTCCCGATTAAACTTACGGTTTATGACTATGACTTGCT  359
            |||||||||||||||||||||||||||||||||||| |||||||| || ||||||||| |
Sbjct  171  ACTTTCCGTGACTGATCCGAATCTCCCGATTAAACTCACGGTTTACGATTATGACTTGTT  230

Query  360  CTCCGCGGATGACAAGATGGGAGAAGCCGAGTTCCACATTGGTCCATTTATTGAAGCTAT  419
            ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||
Sbjct  231  CTCCGCGGATGACAAGATGGGAGAAGCCGAGTTTCACATTGCTCCATTTCTTGAAGCTAT  290

Query  420  TAAATTT-GCCCATCAGCTCGGACCAGGACTTCCTAATGGGACCATAATAAAGAAGATAG  478
            ||||||| ||| |||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct  291  TAAATTTTGCC-ATCAGCTCGGACCAGGACTTCCTAGTGGGACCATAATAAGGAAGATAG  349

Query  479  AGCCGAGCAGAAAAAATTGTTTGTCTGAATCA-AGCCACATTGTGTTGAACCAAGGCAAG  537
            |||| ||||||||||||||||||||||||  | |||||||||||||||||||||||||||
Sbjct  350  AGCCAAGCAGAAAAAATTGTTTGTCTGAAG-AGAGCCACATTGTGTTGAACCAAGGCAAG  408

Query  538  ATTGTCCAGAATATGTTCCTTAGACTCCAGCACGTGGAGTGTGGAGAGGTTGAGCTACAG  597
            ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct  409  ATTGTCCAGAATATGTTCCTTAGACTCCAACACGTGGAATGTGGAGAGGTTGAGCTACAG  468

Query  598  CTCGAGTGGATCGATGTCCCGGGTTCAAGGGGTATTTAG  636
            |||||||||||||||||||| ||| ||||||||||||||
Sbjct  469  CTCGAGTGGATCGATGTCCCCGGTGCAAGGGGTATTTAG  507



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28287204414


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5