BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37770.1
Length=766
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493755 jgi|Araly1|493755|fgenesh2_kg.7__3188__AT5G37770.1 793 0.0
> Ahg493755 jgi|Araly1|493755|fgenesh2_kg.7__3188__AT5G37770.1
Length=690
Score = 793 bits (429), Expect = 0.0
Identities = 512/549 (93%), Gaps = 17/549 (3%)
Strand=Plus/Plus
Query 1 ACACTACTCTAACCGttttttttCTTC--TCTCAAATCTCAAAATCTC-AATTTCTTCAA 57
|||| ||||||||||||||||||| || |||| |||| ||||||| || |||||||
Sbjct 1 ACACAACTCTAACCGTTTTTTTTC-TCAATCTC---TCTC-AAATCTCAAAACTCTTCAA 55
Query 58 CAATGTCATCGAAGAACGGAGTTGTTCGTAGCTGTTTAGGATCAATGGACGACATCAAAA 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 CAATGTCATCGAAGAACGGAGTTGTTCGTAGCTGTTTAGGATCAATGGACGACATCAAAA 115
Query 118 AAGTCTTCCAACGATTCGACAAAAACGGCGACGGGAAAATCTCCGTCGACGAGCTCAAAG 177
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 116 AAGTCTTCCAACGATTCGACAAAAACGGCGACGGAAAAATCTCCGTCGACGAGCTAAAAG 175
Query 178 AAGTGATCCGCGCTCTCTCACCAACAGCATCACCAGAAGAAACAGTAACGATGATGAAAC 237
||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 176 AAGTGATTCGCGCTCTTTCACCAACAGCATCACCGGAAGAAACAGTAACGATGATGAAAC 235
Query 238 AATTCGATCTAGACGGTAACGGATTCATAGATCTGGACGAATTCGTCGCGCTTTTCCAAA 297
|||| ||||| |||||||| |||||||||||||||||||||||||| || ||||| ||||
Sbjct 236 AATTTGATCTCGACGGTAATGGATTCATAGATCTGGACGAATTCGTTGCTCTTTTTCAAA 295
Query 298 TCGGAATCGGAGGAGGAGGTAACAATCGAAACGACGTAAGCGATTTGAAAGAAGCGTTTG 357
|||||||||| ||||||||||| ||||||| | || | |||||||||||||||||
Sbjct 296 TCGGAATCGGTGGAGGAGGTAATAATCGAA--G-CG-A-----TTTGAAAGAAGCGTTTG 346
Query 358 AGTTATATGATTTGGATGGTAATGGAAGGATCTCGGCGAAAGAGCTTCATTCAGTGATGA 417
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 347 AGTTATATGATTTGGATGGTAATGGAAGAATCTCGGCGAAAGAGCTTCATTCAGTGATGA 406
Query 418 AGAATTTGGGTGAGAAGTGCTCTGTGCAAGATTGTAAGAAGATGATTAGTAAAGTTGATA 477
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 407 AGAATTTGGGTGAGAAGTGTTCTGTGCAAGATTGTAAGAAGATGATTAGTAAAGTTGATG 466
Query 478 TTGATGGTGATGGTTGTGTTAATTTTGATGAGTTTAAGAAGATGATGAGTAATGGTGGTG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 TTGATGGTGATGGTTGTGTTAATTTTGATGAGTTTAAGAAGATGATGAGTAATGGTGGTG 526
Query 538 GTGCTTGAG 546
|||| ||||
Sbjct 527 GTGCATGAG 535
Score = 159 bits (86), Expect = 2e-38
Identities = 136/158 (86%), Gaps = 12/158 (8%)
Strand=Plus/Plus
Query 611 TTTAGTGACGGCGATTAAAAACCCTAGAAGTATGTGGTGATTGATGAATATTGATTTTAA 670
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 536 TTTAGTGACGGCGATTAAAAACCCTAGAAGTTTGTGGTGATTGATGATTATTGATTTTAA 595
Query 671 C-----G-G-TTGTTTCTATATCTTCTGCTCTTTTT-ATAATTAATATGCTTTGTTGAGT 722
| | | |||||||||| | || |||||||||| ||||||| || ||||| | ||||
Sbjct 596 CTATATGAGGTTGTTTCTATCT-TT-TGCTCTTTTTTATAATTACTAAGCTTT-TGGAGT 652
Query 723 GTTATT-AGTCTTTAATATTCTGAATTAATTACTGATT 759
||||| | |||||||| | ||||||||||||||||||
Sbjct 653 ATTATTTACTCTTTAATGTACTGAATTAATTACTGATT 690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28249081497
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5