BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37780.3
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947442 jgi|Araly1|947442|scaffold_703671.1 678 0.0
Ahg925800 jgi|Araly1|925800|scaffold_201361.1 499 1e-140
Ahg938640 jgi|Araly1|938640|scaffold_502831.1 383 1e-105
> Ahg947442 jgi|Araly1|947442|scaffold_703671.1
Length=495
Score = 678 bits (367), Expect = 0.0
Identities = 387/397 (97%), Gaps = 0/397 (0%)
Strand=Plus/Plus
Query 240 ATGGTTGCATCACAACAAAAGAGCTGGGAACAGTTATGCGTTCACTAGGACAAAACCCAA 299
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 99 ATGGTTGCATCACAACCAAAGAGCTGGGAACAGTTATGCGTTCACTAGGACAAAACCCAA 158
Query 300 CAGAGGCTGAGCTCCAAGACATGATCAACGAGGTTGATGCAGATGGAAACGGCACTATCG 359
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 159 CAGAGGCTGAGCTTCAAGACATGATCAACGAGGTTGATGCAGATGGAAACGGCACAATTG 218
Query 360 ACTTCCCCGAGTTCCTGAACCTGATGGCTAAGAAGATGAAAGACACTGACTCCGAGGAAG 419
| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 219 ATTTCCCAGAGTTCCTGAACCTGATGGCTAAGAAGATGAAAGACACTGACTCAGAGGAAG 278
Query 420 AGCTAAAAGAAGCCTTCAGGGTTTTCGACAAAGACCAGAACGGTTTCATCTCCGCTGCTG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 AGCTAAAAGAAGCCTTCAGGGTTTTCGACAAAGACCAGAACGGTTTCATCTCCGCTGCTG 338
Query 480 AGCTACGCCATGTGATGACCAATCTTGGTGAGAAGCTAACTGATGAAGAAGTGGAAGAGA 539
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 339 AGCTACGCCATGTGATGACCAATCTTGGTGAGAAGCTAACTGATGAGGAAGTTGAAGAGA 398
Query 540 TGATCCGTGAGGCTGATGTTGATGGAGATGGTCAGATTAACTATGAAGAGTTTGTCAAGA 599
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 399 TGATCCGTGAGGCTGATGTTGATGGAGATGGTCAGATTAACTATGAGGAGTTTGTCAAGA 458
Query 600 TTATGATGGCTAAGTGATTTGATAAAGGtgatgatga 636
|||||||||||||||||||||||||||||||||||||
Sbjct 459 TTATGATGGCTAAGTGATTTGATAAAGGTGATGATGA 495
Score = 187 bits (101), Expect = 1e-46
Identities = 104/105 (99%), Gaps = 1/105 (1%)
Strand=Plus/Plus
Query 64 AGAAAGACGATTTCTCGAAGAAGCTATGGCGGATCAACTCACTGACGAACAGATCTCCGA 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAAGACGATTTCTCGAAGAAGCTATGGCGGATCAACTCACTGACGAACAGATCTCCGA 60
Query 124 ATTCAAGGAAGCTTTTAGCCTCTTCGACAAAGATGGCGATGTGTT 168
||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 ATTCAAGGAAGCTTTTAGCCTCTTCGACAAAGATGGCGATG-GTT 104
> Ahg925800 jgi|Araly1|925800|scaffold_201361.1
Length=490
Score = 499 bits (270), Expect = 1e-140
Identities = 343/379 (91%), Gaps = 2/379 (1%)
Strand=Plus/Plus
Query 240 ATGGTTGCATCACAACAAAAGAGCTGGGAACAGTTATGCGTTCACTAGGACAAAACCCAA 299
||||||||||||| ||||| |||||||||||||| ||||| |||||||| || |||||||
Sbjct 94 ATGGTTGCATCACCACAAAGGAGCTGGGAACAGTGATGCGGTCACTAGGGCAGAACCCAA 153
Query 300 CAGAGGCTGAGCTCCAAGACATGATCAACGAGGTTGATGCAGATGGAAACGGCACTATCG 359
|||| |||||||| |||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 154 CAGAAGCTGAGCTACAAGACATGATCAACGAGGTTGATGCTGATGGAAACGGCACCATTG 213
Query 360 ACTTCCCCGAGTTCCTGAACCTGATGGCTAAGAAGATGAAAGACACTGACTCCGAGGAAG 419
||||||| |||||||| ||||| ||||||||||||||||| ||||| ||||| |||||||
Sbjct 214 ACTTCCCTGAGTTCCTAAACCTTATGGCTAAGAAGATGAAGGACACAGACTCGGAGGAAG 273
Query 420 AGCTAAAAGAAGCCTTCAGGGTTTTCGACAAAGACCAGAACGGTTTCATCTCCGCTGCTG 479
|||| |||||||| |||||||| |||||||||||||||||||| ||||| |||||||| |
Sbjct 274 AGCTGAAAGAAGCTTTCAGGGTGTTCGACAAAGACCAGAACGGGTTCATATCCGCTGCAG 333
Query 480 AGCTACGCCATGTGATGACCAATCTT-GGTGAGAAGCTAACTGATGAAGAAGTGGAAGAG 538
|||| |||||||||||||| ||| || |||||||| || ||||||||||| || || |||
Sbjct 334 AGCTGCGCCATGTGATGACTAAT-TTAGGTGAGAAACTGACTGATGAAGAGGTCGAGGAG 392
Query 539 ATGATCCGTGAGGCTGATGTTGATGGAGATGGTCAGATTAACTATGAAGAGTTTGTCAAG 598
||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 393 ATGATCCGTGAAGCTGATGTTGATGGAGATGGTCAGATAAACTACGAGGAGTTTGTCAAG 452
Query 599 ATTATGATGGCTAAGTGAT 617
|||||||||||||||||||
Sbjct 453 ATTATGATGGCTAAGTGAT 471
Score = 119 bits (64), Expect = 4e-26
Identities = 81/89 (91%), Gaps = 1/89 (1%)
Strand=Plus/Plus
Query 80 GAAGAAGCTATGGCGGATCAACTCACTGACGAACAGATCTCCGAATTCAAGGAAGCTTTT 139
|||||||||||||||||||| || ||||| ||||||||||| || || ||||||||||||
Sbjct 12 GAAGAAGCTATGGCGGATCAGCTAACTGATGAACAGATCTCTGAGTTTAAGGAAGCTTTT 71
Query 140 AGCCTCTTCGACAAAGATGGCGATGTGTT 168
|||||||||||||||||||| |||| |||
Sbjct 72 AGCCTCTTCGACAAAGATGGAGATG-GTT 99
> Ahg938640 jgi|Araly1|938640|scaffold_502831.1
Length=575
Score = 383 bits (207), Expect = 1e-105
Identities = 324/381 (85%), Gaps = 6/381 (2%)
Strand=Plus/Plus
Query 240 ATGGTTGCATCACAACAAAAGAGC-TGGGAACAGTTATGCGTTCACTAGGACAAAACCCA 298
|||||||||| || || || |||| |||| || || |||||||| || ||||||||||||
Sbjct 95 ATGGTTGCATTACCACCAAGGAGCTTGGG-ACTGTGATGCGTTCCCTTGGACAAAACCCA 153
Query 299 ACAGAGGCTGAGCTCCAAGACATGATCAACGAGGTTGATGCAGATGGAAACGGCACTATC 358
|| || || ||||| |||||||||||||| || || || || ||||| ||||| || ||
Sbjct 154 ACCGAAGCAGAGCTTCAAGACATGATCAATGAAGTGGACGCTGATGGTAACGGTACCATT 213
Query 359 GACTTCCCCGAGTTCCTGAACCTGATGGCTAAG-AAGATGAAAGACACTGACTCCGAGGA 417
|| ||||| |||||| ||||||| |||||| | |||||||| ||||| ||||| |||||
Sbjct 214 GATTTCCCAGAGTTCTTGAACCTCATGGCT-CGTAAGATGAAGGACACCGACTCTGAGGA 272
Query 418 AGAGCTAAAAGAAGCCTTCAGGGTTTTCGACAAAGACCAGAACGGTTTCATCTCCGCTGC 477
|||||| || ||||| ||| ||||||| ||||| ||||||||||||||||| || || ||
Sbjct 273 AGAGCTCAAGGAAGCATTCCGGGTTTTTGACAAGGACCAGAACGGTTTCATTTCAGCCGC 332
Query 478 TGAGCTACGCCATGTGATGACCAATCTTGGTGAGAAGCTAACTGATGAAGAAGTGGAAGA 537
|||||| || ||||||||||| || |||||||||||||| |||||||||||||| || ||
Sbjct 333 TGAGCTTCGTCATGTGATGACAAACCTTGGTGAGAAGCTTACTGATGAAGAAGTTGATGA 392
Query 538 GATGATC-CGTGAGGCTGATGTTGATGGAGATGGTCAGATTAACTATGAAGAGTTTGTCA 596
||||||| | || |||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 393 GATGATCAAG-GAAGCTGATGTTGATGGTGATGGTCAGATTAACTATGAAGAGTTTGTTA 451
Query 597 AGATTATGATGGCTAAGTGAT 617
|| | ||||||||||||||||
Sbjct 452 AGGTCATGATGGCTAAGTGAT 472
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31756389861
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5