BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37790.1
Length=2047
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493757 jgi|Araly1|493757|fgenesh2_kg.7__3190__AT5G37790.1 2909 0.0
Ahg475746 jgi|Araly1|475746|fgenesh2_kg.2__876__AT1G66460.1 1020 0.0
> Ahg493757 jgi|Araly1|493757|fgenesh2_kg.7__3190__AT5G37790.1
Length=1995
Score = 2909 bits (1575), Expect = 0.0
Identities = 1898/2044 (93%), Gaps = 62/2044 (3%)
Strand=Plus/Plus
Query 15 AAAAATAAATACATAT-TCTCTTTCTCTTCCATCAAGCAAAGCTTTTCAAAAAGAATCAA 73
||||||||||| || | ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 AAAAATAAATATAT-TCTCTCTTTCTCTTCCATCAAGCAAAGCTCTTCAAAAAGAATCAA 59
Query 74 ACTTTTCGAA-TCTTTTTG-CTTCTCGAGATCTGTTCATAGAGAGAGAGATAAAGAATGG 131
|| |||| || |||||||| |||||||||||||||| | |||||||||||||||||||
Sbjct 60 AC-TTTC-AAGTCTTTTTGTTTTCTCGAGATCTGTTC--ACAGAGAGAGATAAAGAATGG 115
Query 132 GTTTTTATGAAGGAGCCTCTGTTCATCC-AAGAACTCCAGAAAACAAAAACACAGTGAAT 190
|||||||||||||||||||||||||||| || ||| |||||||||| |||| ||||||||
Sbjct 116 GTTTTTATGAAGGAGCCTCTGTTCATCCAAAAAAC-CCAGAAAACACAAACTCAGTGAAT 174
Query 191 ATTCCGATACTCACTTCTTCTTCTTCATCATCAGATCTTGACGGAGATAACAATGACAAC 250
|||||||| ||||||||||| || |||||| |||||||||||||||||||| ||| ||
Sbjct 175 ATTCCGATTCTCACTTCTTCATCATCATCACCAGATCTTGACGGAGATAACGATG---AC 231
Query 251 AACAACAATACAGGAATCAAAACCCTTTTGAAAAGAATGATCTTTGATTTGGGTTTCGCT 310
|||||| | | ||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 232 AACAAC-A-A-AGGAATCAAAACCCTTTTGAAAAAAATGATTTTTGATTTGGGTTTCGCT 288
Query 311 TGTTTCCTTCCTCCTTTAAGCTCAACCGAAAACTCCGGCAACAACAATggaggaggaaca 370
||||| ||||||||||| |||| ||||||||||||||||||||| |||||
Sbjct 289 TGTTTTCTTCCTCCTTT-AGCT-----GAAAACTCCGGCAACAACAAT---GGAGG---- 335
Query 371 agcggcggcggaggaggaggaggaggaggaggagagAATAACAAAGCTTGGCTATTGGCG 430
|| |||| |||||| | | || |||||||||||||||||||||||||||||||||
Sbjct 336 TGC--CGGC---GGAGGA--A-GCGGCGGAGGAGAGAATAACAAAGCTTGGCTATTGGCG 387
Query 431 GAAACAGCACCGGAGAATATGAATCCTGATCCTCATTCAGTTCATTCATCGTTTAGATTC 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 GAAACAGCACCGGAGAATATGAATCCTGATCCTCATTCAGTTCATTCATCGTTTAGATTC 447
Query 491 AGTCTTTGTTCACAAATCGAGCTTGAGAAAATGAAAGGTGAAGAACCGTCCTTGTCTGCT 550
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 AGTCTTTGTTCACAGATTGAGCTTGAGAAAATGAAAGGTGAAGAACCGTCCTTGTCTGCT 507
Query 551 TCGTCTTCTTGTCGGAATTTGTCGGTTTCTGGTGGTTCCACGACGGTTTTGATGGTTAAT 610
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 508 TCGTCTTCTTGTCGGAATTTGTCGGTTTCTGGTGGTTCCACGACGGTTTTGATGGTGAAT 567
Query 611 TTGGAGAATGGTGTTAAGGAGACTACTGGGAATGCGACTGATGATTTGCGGTGGACTAGA 670
||||||||||||||||||||| || | |||||||||||||||||||| |||
Sbjct 568 TTGGAGAATGGTGTTAAGGAG---AC------T---ACTGATGATTTGCGGTGGACGAGA 615
Query 671 GCTAGGTCGCTTGAGAAGAGTATTTCTCCGGTGGCTAATACTTTGGTTCGGTTTAGCTAC 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 GCTAGGTCGCTTGAGAAGAGTATTTCTCCGGTGGCTAATACTTTGGTTCGGTTTAGCTAC 675
Query 731 GGTGAGATTGTGGCAGCTACTCGTAATTTCTCTAAAGGGAGAGTGTTGGGAAGAGGAGCT 790
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 GGTGAAATTGTGGCAGCTACTCGTAATTTCTCTAAAGGGAGAGTGTTGGGAAGAGGAGCT 735
Query 791 TGTAGCTATGTGTTTAGAGGCAAAATCGGAATGTGGAGAACGGCTTTAGCAATCAAGAGA 850
||||| |||||||||||||||||||||||||||||| |||| ||||| || |||||||||
Sbjct 736 TGTAGTTATGTGTTTAGAGGCAAAATCGGAATGTGGCGAACCGCTTTGGCGATCAAGAGA 795
Query 851 CTTGATAAGGAAGACAAAGAATCTCCTAAATCTTTTTGTAGAGAGTTGATGATTGCAAGC 910
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 796 CTTGATAAGGAAGACAAAGAATCTCCAAAATCTTTTTGTAGAGAGTTGATGATTGCAAGC 855
Query 911 TCTCTTCATAGCTCCAACATTGTACCTCTTCTTGGATTCTGTATTGATCCTGAAGAAGGG 970
||||||||||| | ||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 856 TCTCTTCATAGTTTCAACATTGTGCCTCTTCTTGGCTTTTGTATTGATCCTGAAGAAGGT 915
Query 971 TTATTCTTGGTTTACAAGTATGTCTCTGGTGGTAGCCTCGAACATTATTTACACGATAAG 1030
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 916 TTATTCTTGGTTTACAAGTATGTCTCTGGTGGTAGTCTCGAACATTATTTACACGATAAG 975
Query 1031 AAGAAGAAGAAAGGCGTAAAAGCCGCTTTTGGTTTGCCTTGGTCAGCAAGGTACAAGGTA 1090
|||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 976 AAGAAGAAGAAAGGTGTGAAAGCAGCTTTTGGTTTACCTTGGTCAGCAAGGTACAAGGTA 1035
Query 1091 GCGTTAGGTATAGCAGATGCCATAGCTTATTTGCATAATGGAACAGAGCAATGTGTTGTT 1150
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1036 GCGTTAGGTATCGCAGATGCCATCGCCTATTTGCATAATGGAACAGAGCAATGTGTTGTT 1095
Query 1151 CACAGAGATATCAAACCCTCCAATATTCTTCTTTCCTCAAAGAAAATACCAAAGTTGTGT 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 CACAGAGATATCAAACCCTCCAATATTCTTCTTTCCTCAAAGAAAATACCAAAGTTGTGT 1155
Query 1211 GATTTTGGGTTAGCTACTTGGACCGCTGCACCTTCGGTTCCTTTCCTCTGCAAGACCGTG 1270
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1156 GATTTTGGGTTAGCTACTTGGACCGCTGCGCCTTCTATTCCTTTCCTCTGCAAGACCGTG 1215
Query 1271 AAAGGCACATTCGGCTATCTGGCTCCTGAGTATTTCCAGCATGGTAAGATATCTGACAAG 1330
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1216 AAAGGCACATTCGGCTATCTGGCTCCAGAGTATTTCCAGCATGGTAAAATATCTGACAAG 1275
Query 1331 ACCGATGTTTACGCCTTCGGGGTTGTGTTGCTTGAGCTAATAACTGGCCGGAAACCAATC 1390
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 ACTGATGTTTACGCCTTTGGGGTTGTGTTGCTTGAGCTAATAACTGGCCGGAAACCAATC 1335
Query 1391 GAAGCAAGAAGAGCATCTGGTCAAGAAAATCTGGTTGTTTGGGCGAAACCGTTGTTGGAT 1450
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1336 GAAGCAAGAAGAGCATCTGGTCAAGAAAATTTGGTTGTTTGGGCGAAACCGTTGTTGCAT 1395
Query 1451 AGAGGGATAGAAGCTATAGTGGAGCTGCTTGATCCAAGGCTAAAATGCACAAGAAAAAAC 1510
|||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 1396 AGAGGGATGGAAGCTATAGTGGAGCTGCTCGATCCGAGGCTCAAATGCACAAGAAAAAAC 1455
Query 1511 TCGGTTCAAATGGAGCGGATGATCCGTGCTGCAGCGGCGTGTGTGATCAATGAGGAGTCC 1570
|||||||||||||| || |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1456 TCGGTTCAAATGGAACGTATGATCCGCGCTGCAGCGGCATGTGTGATCAATGAGGAGTCC 1515
Query 1571 CGAAGACCCGGTATGGAAGAGATTGTCTCAATCTTGAAAGGCGAAGAAGGTGTAGAGCCA 1630
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1516 CGAAGACCCGGTATGGAAGAGATTGTCTCAATCTTGAAAGGCGAAGAAGGTTTAGAGCCA 1575
Query 1631 GAAACACATTCAAGCAGGAAAACTACAAATATTTCGGGTATGATTGACTCTTATACACAA 1690
||||||| ||||||||||||| |||||||| |||| ||||||| ||||| |||||||||
Sbjct 1576 AAAACACACTCAAGCAGGAAAAATACAAATACTTCGAGTATGATCGACTCGTATACACAA 1635
Query 1691 TTGCAACAAACCAAATCCGAGATGAAATGTCATCTTGATCTTGCGATGCTCGGAGTAACC 1750
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1636 TTGCAACAAACCAAATCCGAGATGAAATGTCATCTTGATCTTGCGATGCTCGGGGTAACC 1695
Query 1751 GAGTTTGAAGATGATGATCATGTGTACGGCCGATAAAAGATTCTAAGAAATGGATTTAAA 1810
||||||||||| ||||||||||||||||||||||||||||| | || ||||||||| |||
Sbjct 1696 GAGTTTGAAGACGATGATCATGTGTACGGCCGATAAAAGATCCCAATAAATGGATTAAAA 1755
Query 1811 AGTGTGTAAATAGGTATTTATGAAAAGTTTGAAACAGAGTTCTTAGTTTCTGAATTAGTG 1870
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1756 AGTGTGTAAATAGGTATTTATGAAAAGTTTGAAACAGAGTTCTTAGTTTCTGAATCAGTG 1815
Query 1871 ATT--T-GCTGTGTGTACATTGGTTTCG-tttttttttttGGTT-T-CTACTTTGGAGAA 1924
|| | | ||||||||||||||||||| |||||||||||| || | | ||| |||||||
Sbjct 1816 TTTGGTTGGTGTGTGTACATTGGTTTCGGTTTTTTTTTTTGTTTATTCCACTATGGAGAA 1875
Query 1925 AACCGGTTTAGGTTTTGAT-TTTCCGGTTTGGTTATGGAGACA--GCCGATTCTCCGGtt 1981
|||||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||
Sbjct 1876 AACCGGTTTAGGTTTTTATATTTCCGGTTTGGTTATGGAGACAAAGCCGACTCTCCGGTT 1935
Query 1982 tcgttttcagttttcaatatttttgggcttttttttttGAGAAATCCATTAAAATGAGGG 2041
|||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1936 TCGTTTTCCGTTTTCAATATTTTTGGGCTTTTTT----GAGAAATCCATTAAAAAGAGGG 1991
Query 2042 TTGG 2045
||||
Sbjct 1992 TTGG 1995
> Ahg475746 jgi|Araly1|475746|fgenesh2_kg.2__876__AT1G66460.1
Length=1545
Score = 1020 bits (552), Expect = 0.0
Identities = 1130/1398 (81%), Gaps = 83/1398 (6%)
Strand=Plus/Plus
Query 410 AACAAAGCTTGGCTAT-TGGCGGAAACAGCA-CCGGAGAATAT-GAATCCTGATCCTCAT 466
|||||||||||||| | ||| ||| |||| | ||| || ||| || | | || || |||
Sbjct 61 AACAAAGCTTGGCT-TCTGGAGGAGACAG-AGCCGAAGTTTATAGACT-CAGAACCACAT 117
Query 467 TCAGTT-CATTCATCGTTTAGATTCAGTCTTTGTTCACAAATCGAGCTTGAGAAAATGAA 525
|| ||| || || || ||||| || ||||||||||| ||| | ||||| ||||| |||||
Sbjct 118 TC-GTTGCAGTCTTCATTTAGGTTTAGTCTTTGTTCGCAAGTGGAGCTGGAGAAGATGAA 176
Query 526 AGGTGAAGAACCGTCCTTGTCTGCTTCGTCTTCTTGTCGGAATTTGT-CGGTTTCTGGTG 584
| ||| | | | | ||||||| |||| ||||||||| | |||| |||| |
Sbjct 177 A----AAGGA--G--C--AAC--CTTCGTCGTCTTATCGGAATTT-TCCGGTGTCTGAAG 223
Query 585 GTTCCA-CGACGGTTTTGATGGTTAATTTGGAGAATGGTGTTA-AGGAGACTACTG-GGA 641
| | || ||||||| || | || ||| |||||||| | | | |||||| | || ||
Sbjct 224 GAT-CAGAGACGGTTCTGCTAGTGAATCTGGAGAAT-GAG--ACAGGAGA--ATTGACGA 277
Query 642 ATGCGACTGATGATTTGCGGTGGACTAGAGCTAGGTCGCTTGAGAAGAGTATTTCTCCGG 701
||| || ||| |||| | | |||| | || || ||||||||||||||||| |
Sbjct 278 ATGAGA-TGA--ATTT----T--TCGAGAGGTCTTTCACTGGAGAAGAGTATTTCTCCTG 328
Query 702 TGGCTAATACTTTGGTTCGGTTTAGCTACGGTGAGA-TTGTGGCAGCTACTCGTAATTTC 760
|||||||||||||||| || || || ||| | || | | | || ||||| | ||||||
Sbjct 329 TGGCTAATACTTTGGTCCGATTCAGTTACAGCGA-ACTCCTCGCTGCTACGCACAATTTC 387
Query 761 TCTAAAGGGAGAGTGTTGGGAAGAGGAGCTTGTAGCTATGTGTTTAGAGGCAA-AATCGG 819
|| ||| | ||||||||||||||||||||||||||||||||||||| ||| || ||| ||
Sbjct 388 TCAAAACGTAGAGTGTTGGGAAGAGGAGCTTGTAGCTATGTGTTTA-AGGGAAGAATGGG 446
Query 820 AATGTGGAG-AACGGCTTTAGCAATCAAGAGACTTGATAAGGAAG-ACAAAGAATCTCCT 877
|| ||| | || | | |||| ||||| ||||||||||| ||| | |||||||||||
Sbjct 447 CATTTGGCGTAAAG-CAGTAGCCATCAAAAGACTTGATAAA-AAGGATAAAGAATCTCC- 503
Query 878 AAA-TCTTTTTGTAGAGAGTTGATGATTGCAAGCTCTCTTCA-TAGCTCC-AACATTGTA 934
||| || ||||| ||||||||||||||||||||||||||| | | || || ||| |||||
Sbjct 504 AAAGTCGTTTTGCAGAGAGTTGATGATTGCAAGCTCTCTTAAAT-GC-CCTAACGTTGTA 561
Query 935 CCTCTTCTTGGATTCTGTATTGATCCTGAAGAAGGG-TTATTCTTGGTTTACAAGTATGT 993
||||| || || |||||||||||||| || ||||| || |||||||| |||||||||||
Sbjct 562 CCTCTACTAGGGTTCTGTATTGATCCCGATCAAGGGCTT-TTCTTGGTGTACAAGTATGT 620
Query 994 CTCTGGTGGTAGCCTCGAACA-TTATTTACACGATAAGAAGAAGAAGAA-A-GGC--GTA 1048
||||||||| ||||| |||| || |||||| ||||| ||||||||||| | || | |
Sbjct 621 CTCTGGTGGCAGCCTTGAACGCTT-TTTACATGATAACAAGAAGAAGAAGAAGGGAAGGA 679
Query 1049 AAAGCCGCTTTTGGTT-TGCCTTGGTC-AGCAAGGTACAAGGTAGCGTTAGGTATAGCAG 1106
||| || ||| | | |||||||||| | ||||||||||||| || |||||||| ||||
Sbjct 680 AAACCCCCTT--GAATCTGCCTTGGTCTA-CAAGGTACAAGGTTGCCTTAGGTATTGCAG 736
Query 1107 ATGCCATAGCTTATTTGCATAATGGAACAGAGCAATGTGTTGTTCACAGAGATATCAAAC 1166
|||||||||| ||||| |||||||| ||||||||||||||||| || ||||| |||||||
Sbjct 737 ATGCCATAGCCTATTTACATAATGGCACAGAGCAATGTGTTGTGCATAGAGACATCAAAC 796
Query 1167 CCTCCAATATTCTTCTTTCCTCAAAGAAAATACCAAAGTTGTGTGATTTTGGGTTAGCTA 1226
|||| |||||||||||||||||||| ||||| || |||||||||||||||||||| || |
Sbjct 797 CCTCAAATATTCTTCTTTCCTCAAACAAAATTCCGAAGTTGTGTGATTTTGGGTTGGCGA 856
Query 1227 CTTGGACCGCTGCACCTTCGGTTCCTTTCCTCTGCAAGACCGTGAAAGGCACATTCGGCT 1286
|||||||||||||||||||||||||||||||||| || ||||||||||| || ||||| |
Sbjct 857 CTTGGACCGCTGCACCTTCGGTTCCTTTCCTCTGTAAAACCGTGAAAGGAACTTTCGGTT 916
Query 1287 ATCTGGCTCCTGAGTATTTCCAGCATGGTAAGATATCTGACAAGACCGATGTTTACGCCT 1346
|||| ||||||||||||||||| || || ||||||||||||||||||||||||||||| |
Sbjct 917 ATCTAGCTCCTGAGTATTTCCAACACGGCAAGATATCTGACAAGACCGATGTTTACGCAT 976
Query 1347 TCGGGGTTGTGTTGCTTGAGCTAATAACTGGCCGGAAACCAATCGAAGCAAGAAGAGCAT 1406
| || || ||||||||||||||||||||||| ||||| ||||| |||||||||||| |||
Sbjct 977 TTGGAGTCGTGTTGCTTGAGCTAATAACTGGTCGGAAGCCAATTGAAGCAAGAAGACCAT 1036
Query 1407 CTGGTCAAGAAAATCTGGTTGTTTGGGCGAAACCGTTGTTGGATAGAGGGATAGAAGCTA 1466
||||| |||||||| |||| |||||||| ||||||||||| |||||||||| |||||||
Sbjct 1037 CTGGTGAAGAAAATTTGGTAGTTTGGGCAAAACCGTTGTTACATAGAGGGATTGAAGCTA 1096
Query 1467 TAGTGGAGCTGCTTGAT-CCAAGGCTAAAATGCACAAGAAAAAACTCGGTT-CAAATGGA 1524
||| |||| |||||||| ||| |||| |||| |||||||| || |||||| | | ||||
Sbjct 1097 TAGAGGAGTTGCTTGATTCCA-GGCTGAAATATACAAGAAAGAATTCGGTTTCGA-TGGA 1154
Query 1525 GCGGATGATCCGTGCTGCAGCGGCGTGTGTGATCAATGAGGAGTCCCGAAGACCCGGTAT 1584
||| |||||||| ||||||||||| |||||||||| ||||||||| |||||||| || ||
Sbjct 1155 GCGTATGATCCGAGCTGCAGCGGCCTGTGTGATCAGTGAGGAGTCGCGAAGACCGGGGAT 1214
Query 1585 GGAAG-AGATTGTCTCAATCTTGAAAGGCGAAGAAGGTG-TAGAGCCA-GAAACACATTC 1641
| ||| |||| | |||||| | ||||||| ||||| | |||| | | | | |||
Sbjct 1215 G-AAGGAGATACTTTCAATCCTAAAAGGCGGTGAAGG-GATAGAACTAAGGG-CGTTTTC 1271
Query 1642 AAGCAGGAA-AACTACAAATATTTCGGGTATGATTGACTCTTATACACAATTGCAACAAA 1700
|||| |||| || | ||||| || |||||||||| || | |||| | || ||||| | |
Sbjct 1272 AAGCCGGAAGAAAT-CAAATCTTCCGGGTATGATGGATTGTTATCCCCAGTTGCAGCGGA 1330
Query 1701 CCAAATCCGAGATGAA-ATGTCATCTTGAT-CTTGCGATGCTCGGAGTAACCGAGTTTGA 1758
| ||||| |||||||| | |||||||| | |||||||||||||||||||| || |||||
Sbjct 1331 CAAAATCTGAGATGAAGA-GTCATCTT-ACGCTTGCGATGCTCGGAGTAACGGAATTTGA 1388
Query 1759 AGATGATGATCATGTGTA 1776
||||||||||| | ||||
Sbjct 1389 AGATGATGATCTTTTGTA 1406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76980385145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5