BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37800.1
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493759 jgi|Araly1|493759|fgenesh2_kg.7__3192__AT5G37800.1 1229 0.0
Ahg925811 jgi|Araly1|925811|scaffold_201372.1 472 3e-132
> Ahg493759 jgi|Araly1|493759|fgenesh2_kg.7__3192__AT5G37800.1
Length=903
Score = 1229 bits (665), Expect = 0.0
Identities = 831/910 (91%), Gaps = 15/910 (2%)
Strand=Plus/Plus
Query 1 ATGTCACTCATTAACGAACATTGCAATGAGCGTAATTACATCTCAACCCCAAATTCTTCA 60
||||||||||||||||| ||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 1 ATGTCACTCATTAACGATCATTGCAATGAGCCTAATTACATCTCAAACCCAACTTCTTCA 60
Query 61 GAAGATCTCTCTTCACCAC-AGAATTGCGGATTAGA-CGAAGGAGCTTCAGCTTCAAGCA 118
||||| ||||||||||| | |||||| |||||||| ||| ||||||||||||||||||
Sbjct 61 GAAGACCTCTCTTCACC-CGAGAATTTTGGATTAGAGGGAA-GAGCTTCAGCTTCAAGCA 118
Query 119 GTAGCACCATAAATTCTGATCATCAAAATAATCAAGGGTTTGTGTTTTACCCTTCCGGGG 178
|||||||||| ||||||||||||||| | |||||||||| ||||||||||||||||||||
Sbjct 119 GTAGCACCATGAATTCTGATCATCAACAGAATCAAGGGTGTGTGTTTTACCCTTCCGGGG 178
Query 179 AAACCATTGAAGATCATAATTCTTTGATGGATTTCAATGCTTCATCATTCTTCACCTTTG 238
||| |||||| |||||||||||||||||||||||||| |||||||||||||| | |||||
Sbjct 179 AAAGCATTGAGGATCATAATTCTTTGATGGATTTCAACGCTTCATCATTCTTTAGCTTTG 238
Query 239 ATAATCACCGAAGCCTTATCTCTCCCGTGACCAACGGTGGTGCCTTCCCGGTCGTGGACG 298
|| ||||||||||| |||||||||| ||||| ||||||||||||||| ||||| |||| |
Sbjct 239 ATTATCACCGAAGCTTTATCTCTCCTGTGACAAACGGTGGTGCCTTCTCGGTCTTGGA-G 297
Query 299 G-GAACATGAGTTACAGCTATGA-TGGCTGGAGTCATCATCAAG-TGGATAGTATTAGCC 355
| ||||||||||||| |||| | |||||||||||||||| || |||||||||||||||
Sbjct 298 GAGAACATGAGTTACGGCTA-CACAGGCTGGAGTCATCATC-AGATGGATAGTATTAGCC 355
Query 356 CTAGAGTCATCAAAA-CTCCAAATAGCTTTGAAACAACGAGCAGTTTTGGATTGACTTCA 414
||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||
Sbjct 356 CTAGAGTCATCAAAACCT-CAAATAGCTTTGAAACAACGAGCAGTTTTGAATTGACTTCA 414
Query 415 AACTCCATGA-GTAAACCGGCCACAAACCATGGAAATGGAGACTGGTTATACTCTGGTTC 473
|| |||| || |||||||||| ||||||||||||||||||||||||||||| || | |||
Sbjct 415 AATTCCA-GATGTAAACCGGCGACAAACCATGGAAATGGAGACTGGTTATATTCAGATTC 473
Query 474 AACTATTGTAAACATCGGTTCAAGGCACGAGTCCACGTCCCCTAAACTGGCTGGCAATAA 533
||| |||||||||| ||||| |||||||||||| ||||||||||||||||||| |||||
Sbjct 474 AACCATTGTAAACACCGGTTTAAGGCACGAGTCTGCGTCCCCTAAACTGGCTGGAAATAA 533
Query 534 ACGGCCTTTCACGGGAGAGAACACACAACTTTCAAAGAAGCCGAGTAGCGGTACGAATGG 593
||| |||||||||||||| ||||| || ||||| |||||||| ||||| ||||| |||||
Sbjct 534 ACGTCCTTTCACGGGAGATAACACTCACCTTTCGAAGAAGCCAAGTAGTGGTACCAATGG 593
Query 594 AAAGATCAAGCCTAAGGCAACAACTTCACCTAAAGATCCACAAAGCCTAGCAGCCAAGAA 653
| || ||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 594 AGAGGCCAAACCTAAGGCAACAACTTCACCTAAAGATCCACAAAGCCTAGCAGCTAAGAA 653
Query 654 CCGAAGAGAAAGGATAAGCGAACGCCTCAAGGTATTGCAAGAACTTGTACCGAATGGTAC 713
||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||
Sbjct 654 CCGAAGAGAAAGGATAAGCGAGCGCCTCAAAGTATTGCAAGAACTTGTACCCAATGGCAC 713
Query 714 CAAGGTGGATTTGGTAACTATGCTTGAGAAAGCAATTGGCTATGTAAAGTTTCTTCAAGT 773
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 714 CAAGGTGGATTTGGTGACTATGCTTGAGAAAGCAATTGGCTATGTCAAGTTTCTTCAAGT 773
Query 774 ACAAGTTAAGGTACTTGCAGCCGATGAGTTTTGGCCGGCACAAGGAGGGAAAGCTCCGGA 833
|||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 774 ACAAGTTAAGGTACTTGCGGCCGATGAGTTTTGGCCGGCGCAAGGAGGAAAAGCTCCGGA 833
Query 834 CATTTCTCAAGTTAAAGAAGCTATTGACGCAATCCTCTCATCATCACAACGAGATAGTAA 893
||||||||||||||||||||| ||||||||||||||||||||| | ||| ||||||||||
Sbjct 834 CATTTCTCAAGTTAAAGAAGCCATTGACGCAATCCTCTCATCAACGCAAAGAGATAGTAA 893
Query 894 CTCAA-CTAG 902
||||| ||||
Sbjct 894 CTCAAACTAG 903
> Ahg925811 jgi|Araly1|925811|scaffold_201372.1
Length=935
Score = 472 bits (255), Expect = 3e-132
Identities = 377/437 (86%), Gaps = 4/437 (1%)
Strand=Plus/Plus
Query 453 AGACTGGTTATACTCTGGTTCAACTATTGTAAACATC-GGTTCAAGGCACGAGTCCACGT 511
||| |||||||| |||| ||||||| |||||| || | ||||| || |||||||| | ||
Sbjct 452 AGATTGGTTATATTCTGATTCAACTGTTGTAACCA-CTGGTTCTAGACACGAGTCTATGT 510
Query 512 CCCCTAAACT-GGCTGGCAATAAACGGCCTTTCACGGGAGAGAACACACAACTTTCAAAG 570
| |||||| | ||||| || ||||| || |||||||||| ||| |||| || |||
Sbjct 511 CGCCTAAA-TCAGCTGGAAACAAACGTTCTCAGACGGGAGAGAGCACTCAACCATCCAAG 569
Query 571 AAGCCGAGTAGCGGTACGAATGGAAAGATCAAGCCTAAGGCAACAACTTCACCTAAAGAT 630
|| |||| ||| || || ||||||| |||||||||| ||||||||||||||||||||
Sbjct 570 AAACCGAATAGTGGCGTGACTGGAAAGGCCAAGCCTAAGCCAACAACTTCACCTAAAGAT 629
Query 631 CCACAAAGCCTAGCAGCCAAGAACCGAAGAGAAAGGATAAGCGAACGCCTCAAGGTATTG 690
||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| |||||
Sbjct 630 CCACAAAGCCTAGCAGCCAAGAATCGAAGAGAAAGGATAAGTGAACGTCTCAAGATATTG 689
Query 691 CAAGAACTTGTACCGAATGGTACCAAGGTGGATTTGGTAACTATGCTTGAGAAAGCAATT 750
||||||||||| || |||||||||||||| |||||||| || ||||||||||| || |||
Sbjct 690 CAAGAACTTGTTCCCAATGGTACCAAGGTTGATTTGGTGACAATGCTTGAGAAGGCTATT 749
Query 751 GGCTATGTAAAGTTTCTTCAAGTACAAGTTAAGGTACTTGCAGCCGATGAGTTTTGGCCG 810
| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 750 AGTTATGTCAAGTTTCTTCAAGTACAAGTTAAGGTACTTGCAACCGATGAGTTTTGGCCG 809
Query 811 GCACAAGGAGGGAAAGCTCCGGACATTTCTCAAGTTAAAGAAGCTATTGACGCAATCCTC 870
|| |||||||| |||||||| |||||||||||||||||||| || ||||| || ||||||
Sbjct 810 GCCCAAGGAGGAAAAGCTCCAGACATTTCTCAAGTTAAAGACGCCATTGATGCTATCCTC 869
Query 871 TCATCATCACAACGAGA 887
|| ||||||||||||||
Sbjct 870 TCCTCATCACAACGAGA 886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34272502383
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5