BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37810.1
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330314 jgi|Araly1|330314|fgenesh1_pm.C_scaffold_7002541 1336 0.0
Ahg891407 jgi|Araly1|891407|Al_scaffold_0007_3393 1037 0.0
> Ahg330314 jgi|Araly1|330314|fgenesh1_pm.C_scaffold_7002541
Length=852
Score = 1336 bits (723), Expect = 0.0
Identities = 810/853 (95%), Gaps = 2/853 (0%)
Strand=Plus/Plus
Query 1 ATGTCTTCGCATAGTGATGAAATCGAAGAAGAACAAATATCAAGAATTGAGAAAGGCAAA 60
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTTTGCATAGTGATGAAATAGAAGAAGAACAAATATCAAGAATTGAGAAAGGCAAA 60
Query 61 GGCAAAGATTGCCAAGGAGGAATCGAGACGGTTATATGTACTTCTCCCAGCATTGTCTGC 120
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GGCAAAGATTGCCATGGAGGAATCGAGACGGTCATATGTACTTCTCCCAGCATTGTCTGC 120
Query 121 CTTACCCAAAAGTTGATAGCAGAGATGATTGGGACCTATTTTATAGTATTCTCTGGATGT 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 CTTACCCAAAAGTTGATAGCAGAGATGATTGGGACCTATTTCATAGTATTCTCTGGATGT 180
Query 181 GGAGTGGTGGTAGTGAATGTCTTGTACGGAGGAACAATAACATTTCCAGGG-ATCTGTGT 239
|||||||||||||| ||||| |||||||||||||||||||| ||||| ||| || |||||
Sbjct 181 GGAGTGGTGGTAGTAAATGTGTTGTACGGAGGAACAATAACTTTTCC-GGGCATTTGTGT 239
Query 240 TACTTGGGGTCTCATTGTTATGGTCATGATTTACTCTACTGGTCACATTTCCGGTGCACA 299
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 240 GACTTGGGGTCTCATTGTTATGGTCATGATTTACTCTACTGGTCATATATCCGGTGCACA 299
Query 300 TTTTAACCCTGCCGTTACCGTTACTTTCGCCATTTTCCGACGGTTTCCTTGGCATCAGGT 359
||||| ||||||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct 300 TTTTACCCCTGCCGTTACCGTTACTTTCGCCATTTTCCGGCGGTTCCCTTGGTATCAGGT 359
Query 360 ACCATTGTATATAGGTGCACAATTTGCGGGATCGTTACTAGCGAGTTTGACATTGAGACT 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 ACCATTGTATATAGGTGCACAATTTGCAGGATCGTTACTAGCGAGTTTGACATTGAGACT 419
Query 420 AATGTTTAAAGTGACACCCGAAGCTTTCTTTGGAACGACTCCAGCTGATTCGCCAGCACG 479
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 420 TATGTTTAAAGTGACACCCGAAGCTTTCTTTGGAACAACTCCAGCTGATTCGCCGGCACG 479
Query 480 AGCGCTCGTCGCAGAAATCATTATCTCATTCCTCCTCATGTTCGTTATCTCTGGAGTTGC 539
||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 480 AGCGCTCGTGGCAGAGATCATTATCTCATTCCTCCTAATGTTCGTTATCTCTGGTGTTGC 539
Query 540 CACCGATAATCGTGCGGTTGGAGAATTAGCTGGAATTGCGGTGGGGATGACTATAATGGT 599
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 540 CACCGATAATCGAGCGGTCGGAGAATTAGCTGGAATTGCGGTGGGGATGACTATAATTTT 599
Query 600 AAACGTCTTTGTGGCCGGACCAATTTCGGGAGCATCAATGAATCCAGCAAGAAGTCTAGG 659
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 600 GAACGTCTTTGTAGCCGGACCAATTTCGGGAGCATCAATGAATCCAGCGAGAAGTCTAGG 659
Query 660 ACCAGCATTAGTGATGGGAGTATATAAACACATATGGGTTTACATTGTTGGTCCCGTCCT 719
|||||||||||||||||||||||||| ||||||||||||||| ||| |||| ||||| |
Sbjct 660 ACCAGCATTAGTGATGGGAGTATATACACACATATGGGTTTATATTCTTGGCCCCGTTTT 719
Query 720 AGGAGTTATATCCGGAGGTTTTGTTTACAACCTTATCAGATTTACGGATAAGCCACTCCG 779
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGGAGTTATATCAGGAGGTTTTGTTTACAACCTTATCAGATTTACGGATAAGCCACTCCG 779
Query 780 AGAACTCACTAAGAGCGCTTCTTTTCTCCGTGCCGTTTCTCCAAGCCACAAGGGTTCTAG 839
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 780 AGAACTCACTAAGAGCGCTTCTTTTCTCCGTGCCGTTTCTCCAAGCCACAAAGCTTCTAG 839
Query 840 TTCTAAGACTTAA 852
||||||||| |||
Sbjct 840 TTCTAAGACCTAA 852
> Ahg891407 jgi|Araly1|891407|Al_scaffold_0007_3393
Length=852
Score = 1037 bits (561), Expect = 0.0
Identities = 742/829 (90%), Gaps = 13/829 (2%)
Strand=Plus/Plus
Query 1 ATGTCTTCGCATAGTGATGAAATCGAAGAAGAACAAATATCAAGAATTGAGAAAGGCAAA 60
||| |||||||| |||| || ||||||| |||||||||||||||||||||||||| ||
Sbjct 1 ATGACTTCGCATTGTGAAGAGATCGAAGCCGAACAAATATCAAGAATTGAGAAAGGTAAT 60
Query 61 GGCAAAGATTGCCAAGGAGGAATCGAGACGGTTATATGTACTTCTCCCAGCATTGTCTGC 120
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 61 GGCAAAGATAGCCAAGGAGGAATCGAGACGGCCATATGTACTTCTCCCAGCATTGTTTGC 120
Query 121 CTTACCCAAAAGTTGATAGCAGAGATGATTGGGACCTATTTTATAGTATTCTCTGGATGT 180
||||| ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 121 CTTACACAAAAGTTGATAGCAGAGATGATTGGGACGTATTTCATAATATTCTCTGGATGT 180
Query 181 GGAGTGGTGGTAGTGAATGTCTTGTACGGAGGAACAATAACATTTCCAGGGATCTGTGTT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGAGTGGTGGTAGTGAATGTCTTGTACGGAGGAACAATAACATTTCCAGGGATCTGTGTG 240
Query 241 ACTTGGGGTCTCATTGTTATGGTCATGATTTACTCTACTGGTCACATTTCCGGTGCACAT 300
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 ACTTGGGGTCTCATAGTTATGGTCATGATTTACTCTACCGGTCACATTTCCGGTGCACAT 300
Query 301 TTTAACCCTGCCGTTACCGTTACTTTCGCCATTTTCCGACGGTTTCCTTGGCATCAGGTA 360
|||||||| ||||| || || |||||||| ||||||| |||||||||||| ||||||||
Sbjct 301 TTTAACCCGGCCGTCACTGTCACTTTCGCTGTTTTCCGGCGGTTTCCTTGGTATCAGGTA 360
Query 361 CCATTGTATATAGGTGCACAATTTGCGGGATCGTTACTAGCGAGTTTGACATTGAGACTA 420
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 361 CCATTGTATATAGGTGCACAACTTACGGGATCGTTACTAGCGAGTTTGACATTGAGACTA 420
Query 421 ATGTTTAAAGTGACACCCGAAGCTTTCTTTGGAACGACTCC-AGCTGATTCGCCAGCACG 479
||||| || |||||||| |||||||||||||||| | ||| | ||||||| | | ||
Sbjct 421 ATGTTCAATGTGACACCAAAAGCTTTCTTTGGAACAAGTCCGA-CTGATTCATCGGGACA 479
Query 480 AGCGCTCGTCGCAGAAATCATTATCTCATTCCTCCTCATGTTCGTTATCTCTGGAGTTGC 539
||| ||||| ||||| |||||||||||||||||||||||||| || |||||||| |||||
Sbjct 480 AGCACTCGTTGCAGAGATCATTATCTCATTCCTCCTCATGTTTGTAATCTCTGGTGTTGC 539
Query 540 CACCGATAATCGTGCGGTTGGAGAATTAGCTGGAATTGCGGTGGGGATGACTATAATGGT 599
||| |||| ||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 540 CACTGATAGTCGTGCGACCGGAGAATTAGCTGGAATTGCGGTGGGGATGACTATAATTTT 599
Query 600 AAACGTCTTTGTGGCCGGACCAATTTCGGGAGCATCAATGAATCCAGCAAGAAGTCTAGG 659
||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 600 GAACGTCTTTGTAGCCGGACCTATTTCGGGAGCATCAATGAATCCAGCGAGAAGTCTTGG 659
Query 660 ACCAGCATTAGTGATGGGA-GTATATAAAC-ACATATGGGTTTACATTGTTGGTCCCGTC 717
||| ||| ||||||||||| | ||||||| | || ||||||||||||||||||||| ||
Sbjct 660 ACCGGCAATAGTGATGGGAAG-ATATAAAGGA-ATTTGGGTTTACATTGTTGGTCCCTTC 717
Query 718 CTAGGAGTTATAT-CCGGAGGTTTTGTTTACAACCTT-ATCAGATTTACGGATAAGCCAC 775
| ||| || | | |||||||||||||||||||| || || |||||||||||||||||||
Sbjct 718 GTCGGAATTTT-TGCCGGAGGTTTTGTTTACAAC-TTCATGAGATTTACGGATAAGCCAC 775
Query 776 TCCGAGAACTCACTAAGAGCGCTTCTTTTCTCCGT-GCCGTTTCTCCAA 823
|||| |||||||| || || ||||||||||| ||| || ||| | ||||
Sbjct 776 TCCGGGAACTCACAAAAAGTGCTTCTTTTCTTCGTAGC-GTTGC-CCAA 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31527652359
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5