BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37820.1
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891407 jgi|Araly1|891407|Al_scaffold_0007_3393 1352 0.0
Ahg330314 jgi|Araly1|330314|fgenesh1_pm.C_scaffold_7002541 970 0.0
> Ahg891407 jgi|Araly1|891407|Al_scaffold_0007_3393
Length=852
Score = 1352 bits (732), Expect = 0.0
Identities = 812/852 (95%), Gaps = 0/852 (0%)
Strand=Plus/Plus
Query 1 ATGACTTCTCATGGTGAAGAGATCGAAGACGAACAAATATCAAGAATTGAGAAAGGCAAT 60
|||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1 ATGACTTCGCATTGTGAAGAGATCGAAGCCGAACAAATATCAAGAATTGAGAAAGGTAAT 60
Query 61 TGCAAAGATAGCCAAGGAGGAATGGAGACGGCCATATGTAGTTCTCCTAGCATTGTTTGC 120
|||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||
Sbjct 61 GGCAAAGATAGCCAAGGAGGAATCGAGACGGCCATATGTACTTCTCCCAGCATTGTTTGC 120
Query 121 CTTACACAAAAGTTGATAGCAGAGATGATTGGAACCTATTTCATAATATTCTCTGGATGT 180
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 121 CTTACACAAAAGTTGATAGCAGAGATGATTGGGACGTATTTCATAATATTCTCTGGATGT 180
Query 181 GGAGTAGTGGTAGTGAATGTCTTGTACGGAGGAACAATAACATTTCCAGGGATCTGTGTG 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGAGTGGTGGTAGTGAATGTCTTGTACGGAGGAACAATAACATTTCCAGGGATCTGTGTG 240
Query 241 ACTTGGGGTCTCATTGTTATGGTCATGATTTACTCTACTGGTCACATTTCCGGTGCACAT 300
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 ACTTGGGGTCTCATAGTTATGGTCATGATTTACTCTACCGGTCACATTTCCGGTGCACAT 300
Query 301 TTTAACCCTGCCGTCACTGTCACGTTCGCTGTTTTCCGGCGGTTTCCTTGGTATCAGGTA 360
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 TTTAACCCGGCCGTCACTGTCACTTTCGCTGTTTTCCGGCGGTTTCCTTGGTATCAGGTA 360
Query 361 CCATTGTATATAGGTGCACAACTTACGGGATCATTACTAGCGAGTTTAACATTGAGACTA 420
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 361 CCATTGTATATAGGTGCACAACTTACGGGATCGTTACTAGCGAGTTTGACATTGAGACTA 420
Query 421 ATGTTCAATGTGACACCCAAAGCTTTCTTTGGAACAACTCCAACTGATTCATCAGGACAA 480
||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||
Sbjct 421 ATGTTCAATGTGACACCAAAAGCTTTCTTTGGAACAAGTCCGACTGATTCATCGGGACAA 480
Query 481 GCACTAGTAGCAGAGATCATTATCTCATTCCTCCTCATGTTCGTTATCTCCGGCGTTGCC 540
||||| || |||||||||||||||||||||||||||||||| || ||||| || ||||||
Sbjct 481 GCACTCGTTGCAGAGATCATTATCTCATTCCTCCTCATGTTTGTAATCTCTGGTGTTGCC 540
Query 541 ACTGATAGTCGTGCGACTGGAGAATTAGCTGGAATCGCGGTGGGGATGACTATAATATTG 600
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 541 ACTGATAGTCGTGCGACCGGAGAATTAGCTGGAATTGCGGTGGGGATGACTATAATTTTG 600
Query 601 AACGTCTTTGTAGCCGGACCTATTTCGGGAGCATCAATGAATCCAGCGAGAAGTCTTGGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AACGTCTTTGTAGCCGGACCTATTTCGGGAGCATCAATGAATCCAGCGAGAAGTCTTGGA 660
Query 661 CCAGCAATAGTGATGGGAAGATATAAAGGAATTTGGGTTTACATTGTTGGTCCCTTTGTC 720
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 661 CCGGCAATAGTGATGGGAAGATATAAAGGAATTTGGGTTTACATTGTTGGTCCCTTCGTC 720
Query 721 GGAATTTTTGCCGGAGGTTTTGTTTACAACTTCATGAGATTTACGGATAAGCCACTACGA 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 721 GGAATTTTTGCCGGAGGTTTTGTTTACAACTTCATGAGATTTACGGATAAGCCACTCCGG 780
Query 781 GAACTCACAAAAAGTGCTTCTTTCCTCCGTAGTGTTGCCCAAAAAGACAATGCTTCTAAA 840
||||||||||||||||||||||| || ||||| |||||||||||| ||||||||||||||
Sbjct 781 GAACTCACAAAAAGTGCTTCTTTTCTTCGTAGCGTTGCCCAAAAAAACAATGCTTCTAAA 840
Query 841 TCAGATGGCTAA 852
|| || ||||||
Sbjct 841 TCTGAGGGCTAA 852
> Ahg330314 jgi|Araly1|330314|fgenesh1_pm.C_scaffold_7002541
Length=852
Score = 970 bits (525), Expect = 0.0
Identities = 717/809 (89%), Gaps = 16/809 (2%)
Strand=Plus/Plus
Query 10 CATGGTGAAGAGATCGAAGACGAACAAATATCAAGAATTGAGAAAGGCAATTGCAAAGAT 69
||| |||| || || ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 10 CATAGTGATGAAATAGAAGAAGAACAAATATCAAGAATTGAGAAAGGCAAAGGCAAAGAT 69
Query 70 AGCCAAGGAGGAATGGAGACGGCCATATGTAGTTCTCCTAGCATTGTTTGCCTTACACAA 129
|||| |||||||| ||||||| |||||||| |||||| |||||||| |||||||| |||
Sbjct 70 TGCCATGGAGGAATCGAGACGGTCATATGTACTTCTCCCAGCATTGTCTGCCTTACCCAA 129
Query 130 AAGTTGATAGCAGAGATGATTGGAACCTATTTCATAATATTCTCTGGATGTGGAGTAGTG 189
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||
Sbjct 130 AAGTTGATAGCAGAGATGATTGGGACCTATTTCATAGTATTCTCTGGATGTGGAGTGGTG 189
Query 190 GTAGTGAATGTCTTGTACGGAGGAACAATAACATTTCCAGGG-ATCTGTGTGACTTGGGG 248
||||| ||||| |||||||||||||||||||| ||||| ||| || ||||||||||||||
Sbjct 190 GTAGTAAATGTGTTGTACGGAGGAACAATAACTTTTCC-GGGCATTTGTGTGACTTGGGG 248
Query 249 TCTCATTGTTATGGTCATGATTTACTCTACTGGTCACATTTCCGGTGCACATTTTAACCC 308
|||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||
Sbjct 249 TCTCATTGTTATGGTCATGATTTACTCTACTGGTCATATATCCGGTGCACATTTTACCCC 308
Query 309 TGCCGTCACTGTCACGTTCGCTGTTTTCCGGCGGTTTCCTTGGTATCAGGTACCATTGTA 368
|||||| || || || ||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 309 TGCCGTTACCGTTACTTTCGCCATTTTCCGGCGGTTCCCTTGGTATCAGGTACCATTGTA 368
Query 369 TATAGGTGCACAACTTACGGGATCATTACTAGCGAGTTTAACATTGAGACTAATGTTCAA 428
||||||||||||| || | ||||| |||||||||||||| ||||||||||| ||||| ||
Sbjct 369 TATAGGTGCACAATTTGCAGGATCGTTACTAGCGAGTTTGACATTGAGACTTATGTTTAA 428
Query 429 TGTGACACCCAAAGCTTTCTTTGGAACAACTCCAACTGATTCATCAGG-ACAAGCACTAG 487
||||||||| ||||||||||||||||||||||| ||||||| | || || ||| || |
Sbjct 429 AGTGACACCCGAAGCTTTCTTTGGAACAACTCCAGCTGATTCGCC-GGCACGAGCGCTCG 487
Query 488 TAGCAGAGATCATTATCTCATTCCTCCTCATGTTCGTTATCTCCGGCGTTGCCACTGATA 547
| |||||||||||||||||||||||||| |||||||||||||| || |||||||| ||||
Sbjct 488 TGGCAGAGATCATTATCTCATTCCTCCTAATGTTCGTTATCTCTGGTGTTGCCACCGATA 547
Query 548 GTCGTGCGA-CTGGAGAATTAGCTGGAATCGCGGTGGGGATGACTATAATATTGAACGTC 606
||| ||| | ||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 548 ATCGAGCGGTC-GGAGAATTAGCTGGAATTGCGGTGGGGATGACTATAATTTTGAACGTC 606
Query 607 TTTGTAGCCGGACCTATTTCGGGAGCATCAATGAATCCAGCGAGAAGTCTTGGACCAGCA 666
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 607 TTTGTAGCCGGACCAATTTCGGGAGCATCAATGAATCCAGCGAGAAGTCTAGGACCAGCA 666
Query 667 ATAGTGATGGGAAG-ATATAAAGGA-ATTTGGGTTTACATTGTTGGTCCC-TTTGTCGGA 723
||||||||||| | ||||| | | || |||||||| ||| |||| ||| ||| | |||
Sbjct 667 TTAGTGATGGGA-GTATATACAC-ACATATGGGTTTATATTCTTGGCCCCGTTT-TAGGA 723
Query 724 ATTTT-TGCCGGAGGTTTTGTTTACAAC-TTCATGAGATTTACGGATAAGCCACTACGAG 781
|| | | | |||||||||||||||||| || || |||||||||||||||||||| ||||
Sbjct 724 GTTATAT-CAGGAGGTTTTGTTTACAACCTT-ATCAGATTTACGGATAAGCCACTCCGAG 781
Query 782 AACTCACAAAAAGTGCTTCTTTCCTCCGT 810
||||||| || || |||||||| ||||||
Sbjct 782 AACTCACTAAGAGCGCTTCTTTTCTCCGT 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31527652359
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5