BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G37840.1 Length=904 Score E Sequences producing significant alignments: (Bits) Value Ahg493762 jgi|Araly1|493762|fgenesh2_kg.7__3195__AT5G37840.1 922 0.0 > Ahg493762 jgi|Araly1|493762|fgenesh2_kg.7__3195__AT5G37840.1 Length=827 Score = 922 bits (499), Expect = 0.0 Identities = 706/800 (88%), Gaps = 37/800 (5%) Strand=Plus/Plus Query 1 ACCAAATCCTCCTCAACATATAAATAGATAGCGTTGCATGCTTTATGAGATATATTCAAC 60 |||||||||| ||||||||||||||||| |||||||||| |||||||||||||| | Sbjct 1 ACCAAATCCTTCTCAACATATAAATAGAAAGCGTTGCATACTTTATGAGATATA-T---- 55 Query 61 AAAAAAGACAGAAAAATGGGGAACACTATAATGGTGAGGAGAAACAAGGTGAAAGTTATG 120 |||||||| |||||||| | ||||||||||||| |||||||||| Sbjct 56 ------------AAAATGGGAAACACTAT-A-----AGGAGAAACAAGGCGAAAGTTATG 97 Query 121 AAGATCGACGGCGATATTTTCCGGCTCAAAACTCCGGTGACGGCGAGTGACGCCACGAAA 180 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 98 AAGATCGACGGTGATATTTTCCGGCTCAAAACTCCGGTGACGGCGAGTGACGCCACGAAA 157 Query 181 GAGTATCCCGGATTCGTGCTGTTAGACTCCGAGACCGTGAAACGATTAGGAGTTCGCGCC 240 |||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 158 GAGTATCCCGGATTTGTGCTGTTAGACTCCGAGACCGTGAAACGGTTAGGAGTTCATGCC 217 Query 241 AAACCTCTAGAGCCGAATCA-AATATTAAAGCCTAATCACA-CATATTTTTTGGTGGACC 298 ||||| |||||||||||||| || |||||||| || || | | |||||||||||||||| Sbjct 218 AAACCGCTAGAGCCGAATCAGAAC-TTAAAGCCGAA-CAAAACTTATTTTTTGGTGGACC 275 Query 299 TTCCACCGGTAGATAAGAGGAATAAGCTTCCATACCGGAGAGTTATGTCCGGTAATATAC 358 |||| || |||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 276 TTCCGCCAGTAGATAAAAAGAATAAGCTTCCATACCGGAGAGTTATGTCCGGTAATATAC 335 Query 359 ATGTTGGCGCAAAGGAGCGTTTAGAGATGTTAATGCTTTCAAGGAGAACGGTTTCTGATG 418 || ||||||| ||||||||||| ||||||||||||||||| ||||||||||||| |||| Sbjct 336 ATATTGGCGCCAAGGAGCGTTTGGAGATGTTAATGCTTTCCCGGAGAACGGTTTCCGATG 395 Query 419 TTGGTGCAGCAAGATCTGAC-GTAGTAGGAGATGGGCCTGAGCTTGGACATACGAGGGTG 477 ||||||| ||||||||| || | | || ||||||||||||||||||||| | ||||||| Sbjct 396 TTGGTGCCGCAAGATCT-ACCG-A--AGCAGATGGGCCTGAGCTTGGACAAAGGAGGGTG 451 Query 478 AGGTTAAGGCTGCCTAGGTCTCAGATAACAAAGTTAATGGAAGAGAGCCATGATGCTTCG 537 || ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 452 AGATTAAGGCTGCCTAGGTCTCAGATCACAAAGTTAATGGGAGAGAGCCATGATGCTTCG 511 Query 538 GAAGTGGCAGCGAAGA-TTATCAGTGCTTATATGGAGAGTTCCGGTGGGATACAAGGCGG 596 ||||| || |||| || |||||| ||||||||||||||||||||||| ||| |||||||| Sbjct 512 GAAGTTGCGGCGA-GAATTATCAATGCTTATATGGAGAGTTCCGGTGAGATGCAAGGCGG 570 Query 597 TAGGGATAACGATGGCCTTCGCCAGAGACTTGGAATTGCGGAGATAAACAACCATTACAA 656 | ||||||||||| |||| || || ||||||||||||||||||||||| ||||||||| Sbjct 571 CAAAGATAACGATGGTCTTCACCGGAAACTTGGAATTGCGGAGATAAACAGCCATTACAA 630 Query 657 AGCACGAGAGAAGCATGTGAGTTTCGCAGAGAAAGGAGGAAGAGGAGAGATCGTTGTTCT 716 ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| | Sbjct 631 AGCACGAGAGAAGCATGTGAGTTTCGCTGAGAAAGGAGGAAGAGGAGAGATCATTGTTTT 690 Query 717 ATGAA-GTACAAAGCAAGAGTAGCCAGCAATTACATATTGTCCACTACTTCAAAA-TGCA 774 || || | |||||||||||||||||| ||||||| |||||||||| ||| |||| |||| Sbjct 691 AT-AACGAACAAAGCAAGAGTAGCCATCAATTACCTATTGTCCACGACTGAAAAAATGCA 749 Query 775 TTTGTTAGGATTCTTAtttt 794 |||||| ||| || |||||| Sbjct 750 TTTGTTCGGACTCATATTTT 769 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33510044043 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5