BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37840.1
Length=904
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493762 jgi|Araly1|493762|fgenesh2_kg.7__3195__AT5G37840.1 922 0.0
> Ahg493762 jgi|Araly1|493762|fgenesh2_kg.7__3195__AT5G37840.1
Length=827
Score = 922 bits (499), Expect = 0.0
Identities = 706/800 (88%), Gaps = 37/800 (5%)
Strand=Plus/Plus
Query 1 ACCAAATCCTCCTCAACATATAAATAGATAGCGTTGCATGCTTTATGAGATATATTCAAC 60
|||||||||| ||||||||||||||||| |||||||||| |||||||||||||| |
Sbjct 1 ACCAAATCCTTCTCAACATATAAATAGAAAGCGTTGCATACTTTATGAGATATA-T---- 55
Query 61 AAAAAAGACAGAAAAATGGGGAACACTATAATGGTGAGGAGAAACAAGGTGAAAGTTATG 120
|||||||| |||||||| | ||||||||||||| ||||||||||
Sbjct 56 ------------AAAATGGGAAACACTAT-A-----AGGAGAAACAAGGCGAAAGTTATG 97
Query 121 AAGATCGACGGCGATATTTTCCGGCTCAAAACTCCGGTGACGGCGAGTGACGCCACGAAA 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 98 AAGATCGACGGTGATATTTTCCGGCTCAAAACTCCGGTGACGGCGAGTGACGCCACGAAA 157
Query 181 GAGTATCCCGGATTCGTGCTGTTAGACTCCGAGACCGTGAAACGATTAGGAGTTCGCGCC 240
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 158 GAGTATCCCGGATTTGTGCTGTTAGACTCCGAGACCGTGAAACGGTTAGGAGTTCATGCC 217
Query 241 AAACCTCTAGAGCCGAATCA-AATATTAAAGCCTAATCACA-CATATTTTTTGGTGGACC 298
||||| |||||||||||||| || |||||||| || || | | ||||||||||||||||
Sbjct 218 AAACCGCTAGAGCCGAATCAGAAC-TTAAAGCCGAA-CAAAACTTATTTTTTGGTGGACC 275
Query 299 TTCCACCGGTAGATAAGAGGAATAAGCTTCCATACCGGAGAGTTATGTCCGGTAATATAC 358
|||| || |||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 276 TTCCGCCAGTAGATAAAAAGAATAAGCTTCCATACCGGAGAGTTATGTCCGGTAATATAC 335
Query 359 ATGTTGGCGCAAAGGAGCGTTTAGAGATGTTAATGCTTTCAAGGAGAACGGTTTCTGATG 418
|| ||||||| ||||||||||| ||||||||||||||||| ||||||||||||| ||||
Sbjct 336 ATATTGGCGCCAAGGAGCGTTTGGAGATGTTAATGCTTTCCCGGAGAACGGTTTCCGATG 395
Query 419 TTGGTGCAGCAAGATCTGAC-GTAGTAGGAGATGGGCCTGAGCTTGGACATACGAGGGTG 477
||||||| ||||||||| || | | || ||||||||||||||||||||| | |||||||
Sbjct 396 TTGGTGCCGCAAGATCT-ACCG-A--AGCAGATGGGCCTGAGCTTGGACAAAGGAGGGTG 451
Query 478 AGGTTAAGGCTGCCTAGGTCTCAGATAACAAAGTTAATGGAAGAGAGCCATGATGCTTCG 537
|| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 452 AGATTAAGGCTGCCTAGGTCTCAGATCACAAAGTTAATGGGAGAGAGCCATGATGCTTCG 511
Query 538 GAAGTGGCAGCGAAGA-TTATCAGTGCTTATATGGAGAGTTCCGGTGGGATACAAGGCGG 596
||||| || |||| || |||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct 512 GAAGTTGCGGCGA-GAATTATCAATGCTTATATGGAGAGTTCCGGTGAGATGCAAGGCGG 570
Query 597 TAGGGATAACGATGGCCTTCGCCAGAGACTTGGAATTGCGGAGATAAACAACCATTACAA 656
| ||||||||||| |||| || || ||||||||||||||||||||||| |||||||||
Sbjct 571 CAAAGATAACGATGGTCTTCACCGGAAACTTGGAATTGCGGAGATAAACAGCCATTACAA 630
Query 657 AGCACGAGAGAAGCATGTGAGTTTCGCAGAGAAAGGAGGAAGAGGAGAGATCGTTGTTCT 716
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
Sbjct 631 AGCACGAGAGAAGCATGTGAGTTTCGCTGAGAAAGGAGGAAGAGGAGAGATCATTGTTTT 690
Query 717 ATGAA-GTACAAAGCAAGAGTAGCCAGCAATTACATATTGTCCACTACTTCAAAA-TGCA 774
|| || | |||||||||||||||||| ||||||| |||||||||| ||| |||| ||||
Sbjct 691 AT-AACGAACAAAGCAAGAGTAGCCATCAATTACCTATTGTCCACGACTGAAAAAATGCA 749
Query 775 TTTGTTAGGATTCTTAtttt 794
|||||| ||| || ||||||
Sbjct 750 TTTGTTCGGACTCATATTTT 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33510044043
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5