BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37850.1
Length=1268
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493763 jgi|Araly1|493763|fgenesh2_kg.7__3196__AT5G37850.2 1914 0.0
> Ahg493763 jgi|Araly1|493763|fgenesh2_kg.7__3196__AT5G37850.2
Length=1265
Score = 1914 bits (1036), Expect = 0.0
Identities = 1198/1273 (94%), Gaps = 24/1273 (2%)
Strand=Plus/Plus
Query 12 CAGCTCTTGATGCCATTCTCCTTCCCGACAACAACAACCACTTCTCTTCCATTCCACAAG 71
||||||||||||| ||||||||||||||||||||| |||||||||| || ||||| |
Sbjct 1 CAGCTCTTGATGCAATTCTCCTTCCCGACAACAACTACCACTTCTCCTCGATTCC-TTA- 58
Query 72 GACCACAATC-AC-----T--TC-AACCTTAATCGAAATCTC--CGATCGAGAAATAGGA 120
| || |||| | | || ||||| ||| || | || |||||||||| |||
Sbjct 59 -ATCAAAATCTCCGGTTTTGCTCAAACCTGAAT-TAATTTTCAATTATCGAGAAATTGGA 116
Query 121 GAATGACGACGCCTCCAGTTCTATCTCTCGCTCTTCCTTCAGATACTGGTCGTGTTCTTA 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 117 GAATGACGACGCCTCCAGTTCTATCTCTCGCTCTTCCTTCAGACACTGGTCGTGTTCTTA 176
Query 181 GTATCCAATCCCACACTGTTCAGGGATATGTTGGTAACAAATCAGCTGTCTTTCCTCTTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GTATCCAATCCCACACTGTTCAGGGATATGTTGGTAACAAATCAGCTGTCTTTCCTCTTC 236
Query 241 AATTGTTGGGGTATGATGTGGATCCAATCAACTCTGTACAATTCTCGAATCATACAGGGT 300
|||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||
Sbjct 237 AATTGTTGGGGTATGATGTGGATCCAATTAACTCAGTACAATTCTCAAATCATACTGGGT 296
Query 301 ATCCTACATTTAAAGGACAGGTTTTGAATGGTCAGCAATTGTGTGATTTGATTGAAGGTC 360
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ATCCTACGTTCAAAGGACAGGTTTTGAATGGTCAGCAATTGTGTGATTTGATTGAAGGTC 356
Query 361 TTGAAGCAAACGATTTGTTGTTCTACACTCATGTATTAACAGGTTATATTGGATCAGTGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TTGAAGCAAACGATTTGTTGTTCTACACTCATGTATTAACAGGTTATATTGGATCAGTGT 416
Query 421 CATTCCTGGATACAATTTTGGAGGTTATTAATAAGCTTCGCTCTGTAAACCCGAATCTTA 480
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||
Sbjct 417 CATTCCTGGATACAATTTTGGAGGTTATCAATAAGCTTCGCGCTGTAAACCCGAAACTTA 476
Query 481 CATATGTATGTGATCCGGTGATGGGTGATGAAGGAAAGTTGTATGTGCCTGAAGAACTGG 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 477 CATATGTATGTGATCCGGTGATGGGTGATGAAGGAAAGTTGTATGTGCCTGAAGAATTGG 536
Query 541 TACATGTTTATCGTGAAAAGGTTGTTCCCTTGGCTTCTATGTTGACTCCTAACCAGTTTG 600
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 537 TACATGTTTATCGTGAAAAGGTTGTTCCCCTGGCTTCTATGTTGACTCCTAACCAGTTTG 596
Query 601 AGGCAGAGAAGTTAACAGGACTAAGGATAAATTCTGAGGAAGATGGCAGGGAAGCTTGTG 660
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 597 AGGCAGAGAAGTTAACAGGATTAAGGATAAATTCTGAGGAAGATGGCAGGGAAGCTTGTG 656
Query 661 CTATTCTTCATGCAGCTGGTCCTTCAAAGGTTGTGATCACTAGCATTACTATAGGAGGCA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CTATTCTTCATGCAGCTGGTCCTTCAAAGGTTGTGATCACTAGCATTACTATAGGAGGCA 716
Query 721 TTCTATTACTTATCGGAAGCCATCAGAAAGAAAAGGGTCTCAAGCCTGAGCAATTCAAGA 780
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TTCTATTACTTATTGGAAGCCATCAGAAAGAAAAGGGTCTCAAGCCTGAGCAATTCAAGA 776
Query 781 TTTTGATACACAAAATCCCTGCTTATTTTACGGGAACAGGAGATCTCATGACTGCTCTTC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TTTTGATACACAAAATCCCTGCTTATTTTACGGGAACAGGAGATCTCATGACTGCTCTTC 836
Query 841 TACTTGGTTGGAGTAATAAATACCCTGACAACCTTGACAAAGCAGCCGAGCTTGCAGTTT 900
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 837 TACTTGGTTGGAGTAATAAATACCCGGACAACCTTGACAAGGCAGCCGAGCTTGCAGTTT 896
Query 901 CAACGTTGCAGGCGCTTTTGCGAAGGACGCTTGATGATTACAAACGAGCTGGGTATGATC 960
||||||||||||| ||| |||||||||| ||||||||||||||||| |||||||||||||
Sbjct 897 CAACGTTGCAGGCACTTCTGCGAAGGACACTTGATGATTACAAACGCGCTGGGTATGATC 956
Query 961 CTACCTCAAGCAGTTTGGAGATTAGATTGATACAAAGCCAGGAAGACATTCGCAACCCGA 1020
|||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |
Sbjct 957 CTACCTCAAGCAGTTTGGAGATTAGATTAATACAAAGCCAAGAAGAAATTCGCAACCCAA 1016
Query 1021 AGGTCGAACTGAAAGCTGA-AAGATACAGCTGAAGCAGGTGAAAAAATGTAACATATTTA 1079
| ||||||||||||||||| || |||||||||||||||||||||| ||||||| |||||
Sbjct 1017 ATGTCGAACTGAAAGCTGAGAA-ATACAGCTGAAGCAGGTGAAAA--TGTAACACATTTA 1073
Query 1080 TC-TGAAATAAGAAAACATAGATGATTTTGGGGATACAATAATTATGTTGCACGATTCTT 1138
|| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1074 TCATAAAATAAGAAAACATAGATGATTTTGGGGATACAATAATTATGTTGCACAATTCTT 1133
Query 1139 TTATGCATATAAAAGAGTACAGACTTCAGAGTAATAGGATGTTCAAGAGCTCCTATAAAG 1198
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1134 TTATGCATATAAAAGAGTACAGACTTCAGAGTAATAGGATGTGCAAGAGCTCCTATAACT 1193
Query 1199 CTTTTAAAACAGCC-TTAGACTGTTTGGTTTG-GATACTTATCTTTC-ATCATTTTGCTG 1255
| |||||||||||| ||||||||||| ||||| | |||||||||||| ||||||||||||
Sbjct 1194 CATTTAAAACAGCCGTTAGACTGTTTTGTTTGTG-TACTTATCTTTCTATCATTTTGCTG 1252
Query 1256 ATGTTAATACGTT 1268
|||||||| |||
Sbjct 1253 GTGTTAATATGTT 1265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47386785831
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5