BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G37850.1 Length=1268 Score E Sequences producing significant alignments: (Bits) Value Ahg493763 jgi|Araly1|493763|fgenesh2_kg.7__3196__AT5G37850.2 1914 0.0 > Ahg493763 jgi|Araly1|493763|fgenesh2_kg.7__3196__AT5G37850.2 Length=1265 Score = 1914 bits (1036), Expect = 0.0 Identities = 1198/1273 (94%), Gaps = 24/1273 (2%) Strand=Plus/Plus Query 12 CAGCTCTTGATGCCATTCTCCTTCCCGACAACAACAACCACTTCTCTTCCATTCCACAAG 71 ||||||||||||| ||||||||||||||||||||| |||||||||| || ||||| | Sbjct 1 CAGCTCTTGATGCAATTCTCCTTCCCGACAACAACTACCACTTCTCCTCGATTCC-TTA- 58 Query 72 GACCACAATC-AC-----T--TC-AACCTTAATCGAAATCTC--CGATCGAGAAATAGGA 120 | || |||| | | || ||||| ||| || | || |||||||||| ||| Sbjct 59 -ATCAAAATCTCCGGTTTTGCTCAAACCTGAAT-TAATTTTCAATTATCGAGAAATTGGA 116 Query 121 GAATGACGACGCCTCCAGTTCTATCTCTCGCTCTTCCTTCAGATACTGGTCGTGTTCTTA 180 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 117 GAATGACGACGCCTCCAGTTCTATCTCTCGCTCTTCCTTCAGACACTGGTCGTGTTCTTA 176 Query 181 GTATCCAATCCCACACTGTTCAGGGATATGTTGGTAACAAATCAGCTGTCTTTCCTCTTC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 177 GTATCCAATCCCACACTGTTCAGGGATATGTTGGTAACAAATCAGCTGTCTTTCCTCTTC 236 Query 241 AATTGTTGGGGTATGATGTGGATCCAATCAACTCTGTACAATTCTCGAATCATACAGGGT 300 |||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||| Sbjct 237 AATTGTTGGGGTATGATGTGGATCCAATTAACTCAGTACAATTCTCAAATCATACTGGGT 296 Query 301 ATCCTACATTTAAAGGACAGGTTTTGAATGGTCAGCAATTGTGTGATTTGATTGAAGGTC 360 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 297 ATCCTACGTTCAAAGGACAGGTTTTGAATGGTCAGCAATTGTGTGATTTGATTGAAGGTC 356 Query 361 TTGAAGCAAACGATTTGTTGTTCTACACTCATGTATTAACAGGTTATATTGGATCAGTGT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 TTGAAGCAAACGATTTGTTGTTCTACACTCATGTATTAACAGGTTATATTGGATCAGTGT 416 Query 421 CATTCCTGGATACAATTTTGGAGGTTATTAATAAGCTTCGCTCTGTAAACCCGAATCTTA 480 |||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||| Sbjct 417 CATTCCTGGATACAATTTTGGAGGTTATCAATAAGCTTCGCGCTGTAAACCCGAAACTTA 476 Query 481 CATATGTATGTGATCCGGTGATGGGTGATGAAGGAAAGTTGTATGTGCCTGAAGAACTGG 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 477 CATATGTATGTGATCCGGTGATGGGTGATGAAGGAAAGTTGTATGTGCCTGAAGAATTGG 536 Query 541 TACATGTTTATCGTGAAAAGGTTGTTCCCTTGGCTTCTATGTTGACTCCTAACCAGTTTG 600 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 537 TACATGTTTATCGTGAAAAGGTTGTTCCCCTGGCTTCTATGTTGACTCCTAACCAGTTTG 596 Query 601 AGGCAGAGAAGTTAACAGGACTAAGGATAAATTCTGAGGAAGATGGCAGGGAAGCTTGTG 660 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 597 AGGCAGAGAAGTTAACAGGATTAAGGATAAATTCTGAGGAAGATGGCAGGGAAGCTTGTG 656 Query 661 CTATTCTTCATGCAGCTGGTCCTTCAAAGGTTGTGATCACTAGCATTACTATAGGAGGCA 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 CTATTCTTCATGCAGCTGGTCCTTCAAAGGTTGTGATCACTAGCATTACTATAGGAGGCA 716 Query 721 TTCTATTACTTATCGGAAGCCATCAGAAAGAAAAGGGTCTCAAGCCTGAGCAATTCAAGA 780 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 TTCTATTACTTATTGGAAGCCATCAGAAAGAAAAGGGTCTCAAGCCTGAGCAATTCAAGA 776 Query 781 TTTTGATACACAAAATCCCTGCTTATTTTACGGGAACAGGAGATCTCATGACTGCTCTTC 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 TTTTGATACACAAAATCCCTGCTTATTTTACGGGAACAGGAGATCTCATGACTGCTCTTC 836 Query 841 TACTTGGTTGGAGTAATAAATACCCTGACAACCTTGACAAAGCAGCCGAGCTTGCAGTTT 900 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 837 TACTTGGTTGGAGTAATAAATACCCGGACAACCTTGACAAGGCAGCCGAGCTTGCAGTTT 896 Query 901 CAACGTTGCAGGCGCTTTTGCGAAGGACGCTTGATGATTACAAACGAGCTGGGTATGATC 960 ||||||||||||| ||| |||||||||| ||||||||||||||||| ||||||||||||| Sbjct 897 CAACGTTGCAGGCACTTCTGCGAAGGACACTTGATGATTACAAACGCGCTGGGTATGATC 956 Query 961 CTACCTCAAGCAGTTTGGAGATTAGATTGATACAAAGCCAGGAAGACATTCGCAACCCGA 1020 |||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| | Sbjct 957 CTACCTCAAGCAGTTTGGAGATTAGATTAATACAAAGCCAAGAAGAAATTCGCAACCCAA 1016 Query 1021 AGGTCGAACTGAAAGCTGA-AAGATACAGCTGAAGCAGGTGAAAAAATGTAACATATTTA 1079 | ||||||||||||||||| || |||||||||||||||||||||| ||||||| ||||| Sbjct 1017 ATGTCGAACTGAAAGCTGAGAA-ATACAGCTGAAGCAGGTGAAAA--TGTAACACATTTA 1073 Query 1080 TC-TGAAATAAGAAAACATAGATGATTTTGGGGATACAATAATTATGTTGCACGATTCTT 1138 || | |||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1074 TCATAAAATAAGAAAACATAGATGATTTTGGGGATACAATAATTATGTTGCACAATTCTT 1133 Query 1139 TTATGCATATAAAAGAGTACAGACTTCAGAGTAATAGGATGTTCAAGAGCTCCTATAAAG 1198 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1134 TTATGCATATAAAAGAGTACAGACTTCAGAGTAATAGGATGTGCAAGAGCTCCTATAACT 1193 Query 1199 CTTTTAAAACAGCC-TTAGACTGTTTGGTTTG-GATACTTATCTTTC-ATCATTTTGCTG 1255 | |||||||||||| ||||||||||| ||||| | |||||||||||| |||||||||||| Sbjct 1194 CATTTAAAACAGCCGTTAGACTGTTTTGTTTGTG-TACTTATCTTTCTATCATTTTGCTG 1252 Query 1256 ATGTTAATACGTT 1268 |||||||| ||| Sbjct 1253 GTGTTAATATGTT 1265 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47386785831 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5