BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37860.1
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
Ahg355742 jgi|Araly1|355742|fgenesh1_pg.C_scaffold_7002915 1227 0.0
> Ahg355742 jgi|Araly1|355742|fgenesh1_pg.C_scaffold_7002915
Length=804
Score = 1227 bits (664), Expect = 0.0
Identities = 761/805 (95%), Gaps = 17/805 (2%)
Strand=Plus/Plus
Query 1 ATGCCACGAAACGTCTACGAACCTTTGAAGACATATTTTCTCAAAGTTAACATTAACTGC 60
|||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGCCAAGAAACGTCTATGAACCTTTGAAGACATATTTTCTCAAAGTTAACATCAACTGC 60
Query 61 CAAGGATGTAAGATGAAAGTGAAGAAAACACTTAGAAAAATTGAAGGTGTTTACTCTGTT 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAAGGATGTAAGAGGAAAGTGAAGAAAACACTTAGAAAAATTGAAGGTGTTTACTCTGTT 120
Query 121 GATATAGACACAGATCAGGAAGCAGTGATTGTTAGAGGTAACTTAGATCCAGAGATTTTG 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 121 GATATAGACACAGATCAGGAAGCAGTGATCGTTAGAGGTAACTTAGATCCAGAGATTCTG 180
Query 181 GTCAAGAAGTTGAACAAGAGAGGGAAACATGCTCAGCTTATGTTCTTGACTCCTTACCAT 240
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 GTCAAGAAGTTGAACAAAAGAGGGAAACATGCTCAGCTTATGTTCTTGACGCCTTACCAT 240
Query 241 AAGGACCAATACTTTGGTAATCATCAAGCTGTTCTTAATCATGACAACAGAAGCTTGGGG 300
|||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 241 AAGGACCAGTACTTTGGTAATCATCAAGCTGGTCTTAACCATGACAACAGAAGCTTGGGG 300
Query 301 AACACACAATACAATTTCGGAAGCAATCACAACAATGTGCCAAGTTATG-AA---AG-G- 354
|||||||||||||||||||||||||||||||||||||| |||||||| | || || |
Sbjct 301 AACACACAATACAATTTCGGAAGCAATCACAACAATGTCCCAAGTTACGAAAGGCAGAGT 360
Query 355 ---CTTAATCATCAGAGtgatgaagagatgatgatgatgatgaacatgaaacctgtgatg 411
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTTCTTAATCATCAGAGTGATGAAGAGATGATGATGATGATGAACATGAAACCTGTGATG 420
Query 412 atgaacgatgCAGATTACTTCGAAATGAGTGATTCACCTGAAGATTTCCAAGAGCTATTT 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATGAACGATGCAGATTACTTCGAAATGAGTGATTCACCTGAAGATTTCCAAGAGCTATTT 480
Query 472 GGGGAAATACCGCAAAGACACAACAACTACGA---AGATGTGAAACCAAATCTGATGAGG 528
|| |||||||||||||||||||||||| || | ||| |||||||||||||||||||||
Sbjct 481 GGAGAAATACCGCAAAGACACAACAACAACTATGGAGAAGTGAAACCAAATCTGATGAGG 540
Query 529 GACATGGATCTTGGATACTCTAATGCATACCCTGCAGCAGAAACAATGAACATGCAGATT 588
||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||
Sbjct 541 GACATGGATCTTGGATATTCTAATGCATACCCTGCAACAGAAGCAATGAACATGCAGATT 600
Query 589 GGAGGAAGAGTAAATAATATGATGGTGAATGAGAGAGGTTTTCA-TGGTCAGATGATGAA 647
|||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||
Sbjct 601 GGAGGAAGAGTAAATAATATGATGGTGACTGAGAGAGGTTT-CAATGGTCAGATGATGAA 659
Query 648 TGAGAGAGGCTTCCATGGTCAGATGATGAATGGTCCATCTCTTGTTCCTCAGTCTATGAA 707
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 660 TGAGAGAGGTTTCCATGGTCAGATGATGACTGGTCCATCTCTTGTTCCTCAGTCTATGAA 719
Query 708 TCATGAACAGTTCAGCTCAAGGCCAGTTCAGTCTATGAATCA--A-CAGTTCAGCTCAAG 764
||||||||||||||||||||| ||| |||||||||||| ||| | |||||||| |||||
Sbjct 720 TCATGAACAGTTCAGCTCAAGACCACTTCAGTCTATGAGTCACGAACAGTTCAGTTCAAG 779
Query 765 ACCAGTTCATGGCTTTTACTACTGA 789
|||||||||||||||||||||||||
Sbjct 780 ACCAGTTCATGGCTTTTACTACTGA 804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29125908588
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5