BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37870.1
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947470 jgi|Araly1|947470|scaffold_703699.1 484 3e-136
Ahg947469 jgi|Araly1|947469|scaffold_703698.1 453 9e-127
Ahg947468 jgi|Araly1|947468|scaffold_703697.1 326 2e-88
Ahg947466 jgi|Araly1|947466|scaffold_703695.1 200 1e-50
> Ahg947470 jgi|Araly1|947470|scaffold_703699.1
Length=907
Score = 484 bits (262), Expect = 3e-136
Identities = 600/757 (79%), Gaps = 47/757 (6%)
Strand=Plus/Plus
Query 106 ATGCTGACGGATCTTGATATTCTCGACTGTCCCATTTGCTACCAAGCATTGA-AGATTCC 164
||||| | ||| || || |||||||| ||||| ||||||||| |||| || | | |||||
Sbjct 148 ATGCTAATGGAACTGGAGATTCTCGATTGTCCTATTTGCTACGAAGCTTTCACA-ATTCC 206
Query 165 TGTCTTCCAGTGTGGA-AATGGGCATTTGGCCTGTTCTTCTTGCTGTCCCAAATTGAGGA 223
| ||||||||||| || ||||| ||| |||| ||||||||||||||||||||| ||| |
Sbjct 207 TATCTTCCAGTGT-GATAATGGACATCTGGCTTGTTCTTCTTGCTGTCCCAAACTGAATA 265
Query 224 ATAAATGTCCTGCATGTGCTTTGCCTGTTGGACACATTCGCTGTAGAGCAATGGAGAGAG 283
||||||| ||||| ||||||| ||||||||| |||| |||||| |||||||||||||| |
Sbjct 266 ATAAATGCCCTGCTTGTGCTTCGCCTGTTGGCCACAATCGCTGCAGAGCAATGGAGAGTG 325
Query 284 TTCTTGAATCAG-TCTTGGTCCCATG-CCGATACGC-AGATTTAGGTTGCACCAAGACA- 339
|||||||||| | ||||||||||||| || | |||| | | ||||||||||| |||| |
Sbjct 326 TTCTTGAATC-GATCTTGGTCCCATGTCC-AAACGCTA-AGTTAGGTTGCACAAAGA-AG 381
Query 340 ATCTATTATGGGAGAGAATCAACCCATGAGAA-GATATGCAACTTCTCTCCATGCTCCTG 398
||| |||||||| ||||||||| ||||| || || ||||| ||||||| |||||||||
Sbjct 382 TTCTCTTATGGGAAAGAATCAACTCATGAAAAGGA-ATGCATGTTCTCTCAATGCTCCTG 440
Query 399 CCCTGTACA-AGG-TTGCAATTATACTGGCTCATACAAGGATCTATA-CGAGCACTATGA 455
||||| || || ||||||||||||| |||||||||||||||| || || |||||| |
Sbjct 441 CCCTG--CATTGGATTGCAATTATACTTGCTCATACAAGGATCTCTACCG-TCACTATCA 497
Query 456 T-CTTACTCACAGTACAGGTAGCA-CGGCTT-AT-AGTT-T-CAATGGC-GTTTCCTATA 508
| | ||| ||| | ||||| | | ||| || |||| | |||| |||| || ||
Sbjct 498 TAC-TACCCAC-TTGGAGGTA-TATCATCTTAATAAGTTCTGTTGTGGCAGTTT-CTTTA 553
Query 509 -TAGCCGCGATGATGTTCATCAGCGATAAGATACTAATT-GAAAGG-GTATATGAGAAGA 565
|| ||| ||| | ||||||||| ||||| ||||| || || ||| | | |||
Sbjct 554 GTATCCG-GAT-A--AACATCAGCGAGAAGATGTTAATTAGACTGGAGTACA-CA-AAGG 607
Query 566 AACTATTGTTTGTAGTGCAGTGTTTTGAGGAGCCGTGTGGTGTTTATGTATCTGTAAGCT 625
|| ||||||| ||||||||||| |||| |||| ||||| |||||| |||||||||
Sbjct 608 CTCTTTTGTTTGCGGTGCAGTGTTTCCAGGAACCGTACGGTGTGTATGTAACTGTAAGCT 667
Query 626 GCATTGCACCATCTGCTCCAGAAGTAGGAGAGTTCTCATATGGTCTCTTGTACACTACTT 685
||||||||||||||||||||||||||||| | |||||||||| ||||| |||||| |
Sbjct 668 GCATTGCACCATCTGCTCCAGAAGTAGGAAATTTCTCATATGATCTCTCCTACACTG-T- 725
Query 686 GGGAAGGAGTCACTATGACTTACCAATCACCAAAGGTGAAAAAGGTTCTTAAAGTGAGCT 745
|| | ||| |||||||||||| |||| |||||| |||| | | ||||| ||||||| |
Sbjct 726 GG-ATGGACAAACTATGACTTACAAATCGCCAAAGATGAAGATGATTCTTGAAGTGAGTT 784
Query 746 CCCAAAGACCTAAAGATAGTTTCATGTTGATCCCTCACAGTTTGTTATGTGGTC-CATTG 804
|||| ||| |||| | |||||||||||||||| ||| ||| || ||||| ||| |
Sbjct 785 TTCAAACTCCTCAAGAGAATTTCATGTTGATCCCTAACAATTTATTGCGTGGTGACAT-G 843
Query 805 TTAGGG-ATGATGCTTTGCATCAATGAGTTGAAGCAA 840
|| || |||| ||||| ||||| ||||||||||||
Sbjct 844 TT-GGACATGAAGCTTTTAATCAAGGAGTTGAAGCAA 879
> Ahg947469 jgi|Araly1|947469|scaffold_703698.1
Length=781
Score = 453 bits (245), Expect = 9e-127
Identities = 613/782 (78%), Gaps = 59/782 (8%)
Strand=Plus/Plus
Query 90 TAAGACCCGCTCAG-CGATGCTGACGGATCTTGATATTCTCGACTGTCCCATTTGCTACC 148
||||| ||||| | ||||||| | |||||| || |||||||| |||||||||||||||
Sbjct 5 TAAGAAACGCTC-GACGATGCTAATGGATCTGGAGATTCTCGATTGTCCCATTTGCTACG 63
Query 149 AAGCATTGA-AGATTCCTGTCTTCCAGTGTGGA-AATGGGCATTTGGCCTGTTCTTCTTG 206
|||| || | | |||||| ||||||||||| || ||||| |||||||| |||||||||||
Sbjct 64 AAGCTTTCACA-ATTCCTATCTTCCAGTGT-GATAATGGACATTTGGCTTGTTCTTCTTG 121
Query 207 CTGTCCCAAATTGAGGAATAAATGTCCTGCATGTGCTTTGCCTGTTGGACACATTCGCTG 266
|||||||| |||| |||||||| ||| |||||||| ||||| |||| || | ||| ||
Sbjct 122 CTGTCCCACCCTGAGTAATAAATGCCCTACATGTGCTCTGCCTATTGGCCATAATCGTTG 181
Query 267 TAGAGCAATGGAGAGAGTTCTTGAATCAG-TCTTGGTCCCATG-CCGATACG-C-AGATT 322
|||||||||||||| ||||||||||| | ||||| ||||||| |||| ||| | || ||
Sbjct 182 CAGAGCAATGGAGAGTGTTCTTGAATC-GATCTTGATCCCATGTCCGA-ACGCCAAG-TT 238
Query 323 TAGGTTGCACCAAGACA-ATCTATTATGGGAGAGAATCAACCCATG-AGAAGATATGCAA 380
| || ||||| |||| | | | |||||||| ||||||||| |||| | |||| |||||
Sbjct 239 T-GGATGCACAAAGA-AGGTATCTTATGGGAAAGAATCAACTCATGAAAAAGA-ATGCAT 295
Query 381 CTTCTCTCCATGCTCCTGCCCTGTACAAGG-TTGCAATTATACTGGCTCATACAAGGATC 439
|||||||| |||||| ||||||||| ||| |||||||| ||| |||||||||||||||
Sbjct 296 CTTCTCTCAATGCTCATGCCCTGTA-GAGGACTGCAATTACACTAGCTCATACAAGGATC 354
Query 440 TATACGA-GCACTAT-GATCTTACTCACAGT-ACAGGTAGCA-CGGCTT-AT-AGTTTCA 493
| ||| | |||||| | | |||| || | | | | ||| | | |||| || || ||||
Sbjct 355 TCTAC-ACTCACTATCG-TATTACCCATA-TGA-AAGTA-TACCAGCTTCATAAG-TTCA 408
Query 494 -ATG-G-CGTTTCCTATATAGCCGCGATGATGTTCATCAGCGAT---AAGATACTAATTG 547
|| | | || ||| ||| | | ||||| ||| ||||||| |||||| |||||
Sbjct 409 TTTGTGACATTCCCTCTATTGTCAAGATGAACATCAGCAGCGATAAGAAGATATTAATT- 467
Query 548 A-AAGGGTATATGA-GAAGA-AACTATTGTTTGTAGTGCAGTGTTTTGA-GGAGCCGTGT 603
| || || ||| | ||||| || | ||||||| ||||||||||||| | ||| || |||
Sbjct 468 AGAATGGAATA-CATGAAGAGAA-TCTTGTTTGCAGTGCAGTGTTTT-AGGGACCCATGT 524
Query 604 GGTGTTTATGTATCTGTAAGCTGCATTGCACCATCTGCTCCAGAAGTAGGAGAGTTCTCA 663
||||| |||||| | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 525 GGTGTGTATGTAACCGTAAGCTGCATTGCACCATCTGCTCCAGAAGTAGGACAGTTCTCA 584
Query 664 TATGGTCTCTTGTACACTACTTGGGAAGGAGT-CACTATGACTTACCAATCACCAAAGGT 722
||| |||||| || || | ||| | || | |||||||| |||| ||||||| | ||
Sbjct 585 TATCGTCTCTCCTATAC--CGTGG-ATGG-GCACACTATGATTTACAAATCACCGGATGT 640
Query 723 GAAAA-AGGTTCTTAAAGTGAGCTCCCAAAGACCTAAAGATAGTTTCATGTTGATCCCTC 781
||| | || |||| ||| ||| | |||| ||| |||| | ||||||||||||||||
Sbjct 641 GAAGAGAG-TTCTGAAATTGAATTTTCAAACCCCTCAAGAGAATTTCATGTTGATCCCTA 699
Query 782 ACAGTTTGTTATGTGGTCCATTGTT-AGGGATGATGC-TTTGCATCAATGA-GTTGAAGC 838
||||||| || ||||| | |||| | | |||| | ||||| |||| || |||||| |
Sbjct 700 ACAGTTTATTGCGTGGTGAAATGTTGAAG-ATGA-GAATTTGCGTCAA-GAAGTTGAACC 756
Query 839 AA 840
||
Sbjct 757 AA 758
> Ahg947468 jgi|Araly1|947468|scaffold_703697.1
Length=727
Score = 326 bits (176), Expect = 2e-88
Identities = 233/261 (89%), Gaps = 2/261 (1%)
Strand=Plus/Plus
Query 581 TGCAGTGTTTTGAGGAGCCGTGTGGTGTTTATGTATCTGTAAGCTGCATTGCACCATCTG 640
|||| ||||| |||||||| | ||||||||||||| ||||||||||||||||||||||||
Sbjct 442 TGCAATGTTTCGAGGAGCCATTTGGTGTTTATGTAACTGTAAGCTGCATTGCACCATCTG 501
Query 641 CTCCAGAAGTAGGAGAGTTCTCATATGGTCTCTTGTACACTACTTG-GGAAGGAGTCACT 699
|||||||||||||||||||||||||| ||||| ||||||||| | ||| | | ||||
Sbjct 502 CTCCAGAAGTAGGAGAGTTCTCATATCATCTCTCCTACACTACT-GAGGATGAACACACT 560
Query 700 ATGACTTACCAATCACCAAAGGTGAAAAAGGTTCTTAAAGTGAGCTCCCAAAGACCTAAA 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 ATGACTTACCAATCACCAAAGGTGAAAAAGGTTCTTAAAGTGAGCTCCCAAAGACCTAAA 620
Query 760 GATAGTTTCATGTTGATCCCTCACAGTTTGTTATGTGGTCCATTGTTAGGGATGATGCTT 819
|| |||| ||| ||||||||||||| |||| || || || ||||||| |||| ||||
Sbjct 621 GAGAGTTCCATATTGATCCCTCACAATTTGATACGTTATCAATTGTTAATTATGAAGCTT 680
Query 820 TGCATCAATGAGTTGAAGCAA 840
|||||||||||||||||||||
Sbjct 681 TGCATCAATGAGTTGAAGCAA 701
> Ahg947466 jgi|Araly1|947466|scaffold_703695.1
Length=430
Score = 200 bits (108), Expect = 1e-50
Identities = 222/275 (81%), Gaps = 15/275 (5%)
Strand=Plus/Plus
Query 572 TGTTTGTAGTGCAGTGTTTTGA-GGAGCCGTGTGGTGTTTA-TGTATCTGTAAGCTGCAT 629
|||||| ||||||||||||| | |||||| |||||||| || | || | |||||||||||
Sbjct 139 TGTTTGCAGTGCAGTGTTTT-AGGGAGCCATGTGGTGTGTATTTTA-CCGTAAGCTGCAT 196
Query 630 TGCACCATCTGCTCCAGAAGTAGGAGAGTTCTCATATGGTCTCTTGTACACTACTTGGGA 689
||||||||||||||||| | || || |||||||||| ||||| |||||| | |||
Sbjct 197 TGCACCATCTGCTCCAGGATTAAGACAGTTCTCATACCATCTCTCCTACACT--GT-GGA 253
Query 690 AGGAG-TCACTATGACTTACCAATCACCAAAGGTGAAAAAG-GTTCTTAAAGTGAGCTCC 747
|| | |||||||| |||| |||||||| |||| || || ||||||||||||||||||
Sbjct 254 TGG-GCACACTATGATTTACAAATCACCAGAGGT-TAAGAGAGTTCTTAAAGTGAGCTCC 311
Query 748 CAAAGACCTAAAGATAGTTTCATGTTGATCCCTCACAGTTTGTTATGTGGTCCATTGTTA 807
||||||||| |||| |||||||||||||||||| ||||||| || |||| | ||||
Sbjct 312 CAAAGACCTGAAGAGAGTTTCATGTTGATCCCTAACAGTTTATTGCATGGTGAAATGTT- 370
Query 808 GG-GATGATGCTTTGCATCAATGA-GTTGAAGCAA 840
|| ||| | ||||| ||||| || | | ||||||
Sbjct 371 GGAGATCAAGCTTTTTATCAA-GAAGCTAAAGCAA 404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31298914857
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5