BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37890.1
Length=1159
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947470 jgi|Araly1|947470|scaffold_703699.1 1013 0.0
Ahg947469 jgi|Araly1|947469|scaffold_703698.1 889 0.0
Ahg947471 jgi|Araly1|947471|scaffold_703700.1 610 7e-174
Ahg948107 jgi|Araly1|948107|scaffold_704336.1 468 5e-131
Ahg356210 jgi|Araly1|356210|fgenesh1_pg.C_scaffold_7003383 329 2e-89
> Ahg947470 jgi|Araly1|947470|scaffold_703699.1
Length=907
Score = 1013 bits (548), Expect = 0.0
Identities = 790/905 (87%), Gaps = 24/905 (3%)
Strand=Plus/Plus
Query 49 TTAGGGTTTAGTCATCTCTCCGACATGGTTGGTGCCGCGATTTTGGAATCTCCCGGCGAA 108
||||||||||| ||||||||||| |||||||| |||||||||| ||||||| ||||||||
Sbjct 1 TTAGGGTTTAGCCATCTCTCCGATATGGTTGGAGCCGCGATTTCGGAATCTTCCGGCGAA 60
Query 109 GGAATTGGATCTAACAGCATTCTCTCGCAAAAGAGACAACTTTCTTCTAGTGATGCAGCT 168
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 61 GGAATTGGATCTAACAGCATTCTCTCGCAAAAGAGACAACTTTCTTCCAGTGATGGAGCC 120
Query 169 AAGAGAGACGCTAAGAAACGCTCGACAATGCTAATGGATCTGGAGATTCTCGATTGTCCC 228
|||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 121 AAGAGAGACGCTAAAAAACGCTCGATTATGCTAATGGAACTGGAGATTCTCGATTGTCCT 180
Query 229 ATTTGCTACGAAGCTTTCACAATTCCCATCTTCCAGTGTGATAATGGACATTTGGCTTGT 288
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 181 ATTTGCTACGAAGCTTTCACAATTCCTATCTTCCAGTGTGATAATGGACATCTGGCTTGT 240
Query 289 TCTTCTTGCTGTCCCAAACTAAATAACAAATGCCCTGCGTGTACTTCGCCTGTTGGCCAC 348
|||||||||||||||||||| ||||| ||||||||||| ||| |||||||||||||||||
Sbjct 241 TCTTCTTGCTGTCCCAAACTGAATAATAAATGCCCTGCTTGTGCTTCGCCTGTTGGCCAC 300
Query 349 AATCGCTGCAGAGCAATGGAGAGTGTTCTTGAATCGATCTTGATCCCGTGTCCGAACGCC 408
|||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||
Sbjct 301 AATCGCTGCAGAGCAATGGAGAGTGTTCTTGAATCGATCTTGGTCCCATGTCCAAACGCT 360
Query 409 AAGTTAGGTTGCAAAAAGAATGTA-TCTTATGGGAAAGAGTTAACTCATGAAAAGGAATG 467
||||||||||||| |||||| || |||||||||||||| | ||||||||||||||||||
Sbjct 361 AAGTTAGGTTGCACAAAGAA-GTTCTCTTATGGGAAAGAATCAACTCATGAAAAGGAATG 419
Query 468 CATGTTCTCTCATTGCGCCTGCCCTGCATTGGATTGCAATTACACTAGCTCATACAAGGA 527
|||||||||||| ||| ||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 420 CATGTTCTCTCAATGCTCCTGCCCTGCATTGGATTGCAATTATACTTGCTCATACAAGGA 479
Query 528 TCTGTACAC-TCACTATCGTATTACCCA-TATGGAAATAAACCAGATTAATACGTTCAT- 584
||| ||| | |||||||| || |||||| | |||| || | || |||||| |||| |
Sbjct 480 TCTCTAC-CGTCACTATCATACTACCCACT-TGGAGGTATATCATCTTAATAAGTTC-TG 536
Query 585 TTGTGACA-TTCCCTTAAGTGTCCGGATGAACATCAGCAAAAAGATATTGATTAGAAC-G 642
||||| || || | ||| || ||||||| ||||||||| | ||||| || |||||| | |
Sbjct 537 TTGTGGCAGTTTCTTTA-GTATCCGGATAAACATCAGCGAGAAGATGTTAATTAGA-CTG 594
Query 643 GA--ACACTTGACGAATCATTTGTTTGCAGTGCAGTGTTTC-AGGGAGCCGTATGGTGTG 699
|| |||| | | || ||||||||| |||||||||||| ||| | ||||| ||||||
Sbjct 595 GAGTACACAA-AGGC-TCTTTTGTTTGCGGTGCAGTGTTTCCAGGAA-CCGTACGGTGTG 651
Query 700 TATGTAACTGTAAGCTGCATTGCGCCATCTTCTCCAGAATTAAGTCAGTACTCATATGCT 759
||||||||||||||||||||||| |||||| |||||||| || | | | |||||||| |
Sbjct 652 TATGTAACTGTAAGCTGCATTGCACCATCTGCTCCAGAAGTAGGAAATTTCTCATATGAT 711
Query 760 CTCTCTTACACTGTCGATGGACACACTGTGATTTACCAATCACCAGAGGTGAAGAGGGTT 819
||||| |||||||| |||||||| ||| ||| |||| |||| ||| || |||||| | ||
Sbjct 712 CTCTCCTACACTGTGGATGGACAAACTATGACTTACAAATCGCCAAAGATGAAGATGATT 771
Query 820 CTT-AAGTTGAGTTTTCAAACCCCGCAAGAGAATTTCATGTTGATTCCC-AACAGTTTAT 877
||| |||| |||||||||||| || |||||||||||||||||||| ||| |||| |||||
Sbjct 772 CTTGAAGT-GAGTTTTCAAACTCCTCAAGAGAATTTCATGTTGAT-CCCTAACAATTTAT 829
Query 878 TGCGTGGTGATGTGTTGGAAATGAGGATTAGCGTCAAGAAGTTGAA-CAAAGAGTAAGAA 936
|||||||||| ||||||| |||| | || ||||| ||||||| ||| |||||||||
Sbjct 830 TGCGTGGTGACATGTTGGACATGAAGCTTTTAATCAAGGAGTTGAAGCAA-GAGTAAGAA 888
Query 937 GGTTG 941
|||||
Sbjct 889 GGTTG 893
> Ahg947469 jgi|Araly1|947469|scaffold_703698.1
Length=781
Score = 889 bits (481), Expect = 0.0
Identities = 688/786 (88%), Gaps = 22/786 (3%)
Strand=Plus/Plus
Query 179 CTAAGAAACGCTCGACAATGCTAATGGATCTGGAGATTCTCGATTGTCCCATTTGCTACG 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 CTAAGAAACGCTCGACGATGCTAATGGATCTGGAGATTCTCGATTGTCCCATTTGCTACG 63
Query 239 AAGCTTTCACAATTCCCATCTTCCAGTGTGATAATGGACATTTGGCTTGTTCTTCTTGCT 298
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 AAGCTTTCACAATTCCTATCTTCCAGTGTGATAATGGACATTTGGCTTGTTCTTCTTGCT 123
Query 299 GTCCCAAACTAAATAACAAATGCCCTGCGTGTACT-TCGCCTGTTGGCCACAATCGCTGC 357
|||||| || | ||| ||||||||| | ||| || | |||| ||||||| ||||| |||
Sbjct 124 GTCCCACCCTGAGTAATAAATGCCCTACATGTGCTCT-GCCTATTGGCCATAATCGTTGC 182
Query 358 AGAGCAATGGAGAGTGTTCTTGAATCGATCTTGATCCCGTGTCCGAACGCCAAGTTAGGT 417
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 183 AGAGCAATGGAGAGTGTTCTTGAATCGATCTTGATCCCATGTCCGAACGCCAAGTTTGGA 242
Query 418 TGCAAAAAGAATGTATCTTATGGGAAAGAGTTAACTCATGAAAAGGAATGCATGTTCTCT 477
|||| |||||| ||||||||||||||||| | |||||||||||| |||||||| ||||||
Sbjct 243 TGCACAAAGAAGGTATCTTATGGGAAAGAATCAACTCATGAAAAAGAATGCATCTTCTCT 302
Query 478 CATTGCGCCTGCCCTGCATTGGATTGCAATTACACTAGCTCATACAAGGATCTGTACACT 537
|| ||| | ||||||| | ||| ||||||||||||||||||||||||||||| ||||||
Sbjct 303 CAATGCTCATGCCCTGTAGAGGACTGCAATTACACTAGCTCATACAAGGATCTCTACACT 362
Query 538 CACTATCGTATTACCCATATGGAAA-TAAACCAGATTAATACGTTCATTTGTGACATTCC 596
||||||||||||||||||||| ||| || ||||| || ||| ||||||||||||||||||
Sbjct 363 CACTATCGTATTACCCATATG-AAAGTATACCAGCTTCATAAGTTCATTTGTGACATTCC 421
Query 597 CT-TAAGTGTCCGGATGAACATCAGCA---A-AA-A-GATATTGATTAGAACGGAACACT 649
|| || |||| |||||||||||||| | || | |||||| ||||||| |||| ||
Sbjct 422 CTCTAT-TGTCAAGATGAACATCAGCAGCGATAAGAAGATATTAATTAGAATGGAATACA 480
Query 650 TGACGA-A-TCATTTGTTTGCAGTGCAGTGTTTCAGGGAGCCGTATGGTGTGTATGTAAC 707
||| || | || || |||||||||||||||||| ||||| || | |||||||||||||||
Sbjct 481 TGAAGAGAATC-TT-GTTTGCAGTGCAGTGTTTTAGGGACCCATGTGGTGTGTATGTAAC 538
Query 708 TGTAAGCTGCATTGCGCCATCTTCTCCAGAATTAAGTCAGTACTCATAT-GCTCTCTCTT 766
|||||||||||||| |||||| |||||||| || | |||| ||||||| | |||||| |
Sbjct 539 CGTAAGCTGCATTGCACCATCTGCTCCAGAAGTAGGACAGTTCTCATATCG-TCTCTCCT 597
Query 767 ACACTGTCGATGGACACACTGTGATTTACCAATCACCAGAGGTGAAGAGGGTTCTTAAGT 826
| || || ||||| |||||| |||||||| ||||||| || |||||||| ||||| || |
Sbjct 598 ATACCGTGGATGGGCACACTATGATTTACAAATCACCGGATGTGAAGAGAGTTCTGAAAT 657
Query 827 TGAGTTTTCAAACCCCGCAAGAGAATTTCATGTTGATTCCC-AACAGTTTATTGCGTGGT 885
||| |||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 658 TGAATTTTCAAACCCCTCAAGAGAATTTCATGTTGAT-CCCTAACAGTTTATTGCGTGGT 716
Query 886 GATGTGTTGGAA-ATGAGGATTAGCGTCAAGAAGTTGAACAAAGAGTAAGAAGGTTGGGG 944
|| ||||| || ||||| ||| ||||||||||||||||| || ||||||| ||||| ||
Sbjct 717 GAAATGTTG-AAGATGAGAATTTGCGTCAAGAAGTTGAACCAATAGTAAGACGGTTGTGG 775
Query 945 TCTTCC 950
| ||||
Sbjct 776 TATTCC 781
> Ahg947471 jgi|Araly1|947471|scaffold_703700.1
Length=851
Score = 610 bits (330), Expect = 7e-174
Identities = 546/649 (84%), Gaps = 20/649 (3%)
Strand=Plus/Plus
Query 215 TTCTCGATTGTCCCATTTGCTACGAAG-CTTTCACAATTCCCATCTTCCAGTGTGATAAT 273
||||||||||||| |||||| || || | |||| ||||| ||||||||||||||||||
Sbjct 124 TTCTCGATTGTCCTGTTTGCTTCG-AGCCACTCACTATTCCTATCTTCCAGTGTGATAAT 182
Query 274 GGACATTTGGCTTGTTCTTCTTGCTGTCCCAAACTAAATAACAAATGCCCTGCGTGTACT 333
|| ||||||||||| |||||||||||||||||||| | ||| || |||||| | ||||||
Sbjct 183 GGGCATTTGGCTTGCTCTTCTTGCTGTCCCAAACTGAGTAATAAGTGCCCTACATGTACT 242
Query 334 TCGCCTGTTGGCCACAATCGCTGCAGAGCAATGGAGAGTGTTCTTGAATCGATCTTGATC 393
| || ||||||| |||| || ||||||||||||||||||||||||||||| ||||| |||
Sbjct 243 TTGCATGTTGGCAACAAACGTTGCAGAGCAATGGAGAGTGTTCTTGAATCAATCTTTATC 302
Query 394 CCGTGTCCGAACGCCAAGTTAGGTTGCA--AAAAGAATGTATCTTATGGGAAAGAGTTAA 451
|| || || |||||||| || || |||| ||||| | |||||||||||||||| | ||
Sbjct 303 CCATGCCCAAACGCCAACTTTGGATGCACCAAAAG--TATATCTTATGGGAAAGAATCAA 360
Query 452 CTCATGAAAAGGAATGCATGTTCTCTCATTGCGCCTGCCCTGCATTGGATTGCAATTACA 511
||||||||||||||||||| |||||||| ||| |||||||||||| ||||||||||||
Sbjct 361 CTCATGAAAAGGAATGCATCTTCTCTCAATGCTATTGCCCTGCATTGAATTGCAATTACA 420
Query 512 CTAGCTCATACAAGGATCTGTACACTCACTATCGTATTACCCATATGGAAATAAACCAGA 571
||||||||||||||||||| |||||||||||||||| ||||| |||||| || |||||
Sbjct 421 CTAGCTCATACAAGGATCTCTACACTCACTATCGTACAACCCACATGGAAGTAGACCAGC 480
Query 572 TTAATACGTTCATTTGTGACATTCCCTTAAGTGTCCGGATGAACATCAGCAA--A-AAGA 628
|||||| || |||||||||||||||||| |||||||||||||||||| ||| | ||||
Sbjct 481 TTAATAAGTACATTTGTGACATTCCCTTTAGTGTCCGGATGAACATCGGCAGCGATAAGA 540
Query 629 -TAT--TGATTAGAACGGAACACTTGACGA-A-TCATTTGTTTGCAGTGCAGTGTTTCAG 683
||| | ||||||| |||| || | || | || || |||||||||||| ||||| ||
Sbjct 541 ATATAATAATTAGAAAGGAATACACAAAGAGACTC-TT-GTTTGCAGTGCAATGTTTTAG 598
Query 684 GGAGCCGTATGGTGTGTATGTAACTGTAAGCTGCATTGCGCCATCTTCTCCAGAATTAAG 743
|||||||| ||||||||||||||| |||||||||||||| |||||| |||| ||| || |
Sbjct 599 GGAGCCGTGTGGTGTGTATGTAACCGTAAGCTGCATTGCACCATCTGCTCCTGAAGTAGG 658
Query 744 TCAGTACTCATATGC-TCTCTCTTACACTGTCGATGGACACACTGTGATTTACCAATCAC 802
|||| ||||||| | |||||| |||||||| |||||||||||| | | ||| ||||||
Sbjct 659 ACAGTTCTCATAT-CATCTCTCCTACACTGTGGATGGACACACTATAACTTATGAATCAC 717
Query 803 CAGAGGTGAAGAGGGTTCTTAA-GTTGAGTTTTCAAACCCCGCAAGAGA 850
| ||||||||||| ||||||| || ||| | |||| || |||||||
Sbjct 718 CCGAGGTGAAGAGAATTCTTAAAGT-GAGCTCCCAAAGACCTCAAGAGA 765
> Ahg948107 jgi|Araly1|948107|scaffold_704336.1
Length=862
Score = 468 bits (253), Expect = 5e-131
Identities = 611/776 (79%), Gaps = 56/776 (7%)
Strand=Plus/Plus
Query 186 ACGCTCGACAATGCTAATGGATCTGGAGATTCTCGATTGTCCC-ATTTGCTA-CGAAG-C 242
||| ||| |||||| ||||||| || |||| ||||| ||| |||||| | || || |
Sbjct 99 ACGATCGGCAATGC---TGGATCTTGATTTTCTTGATTG-CCCTATTTGC-ATCG-AGCC 152
Query 243 TTTCACAATTCCCATCTTCCAGTGTGATAATGGACATTTGGCTTGTTCTTCTTGCTGTCC 302
||||| |||| |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 153 GTTCACTGTTCCTATCTTCCAGTGTGATAATGGACATTTAGCTTGCGCTTCTTGCTGTCC 212
Query 303 CAAACTAAATAACAAATGCCCTGCGTGTACTTCGCCTGTTGGCCACAATCGCTGCAGAGC 362
|||||| | ||| || |||||| | ||||||| ||||||||| |||| |||| |||||||
Sbjct 213 CAAACTGAGTAATAAGTGCCCTACATGTACTTTGCCTGTTGGTCACATTCGCAGCAGAGC 272
Query 363 AATGGAGAGTGTTCTTGAATCGATCTTGATCCCGTGTCCGAACGCCAAGTTAGGTTGCAA 422
||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||
Sbjct 273 AATGGAGAGTGTTCTTGAATCTATCTTTATCCCATGCCCGAACGCCAAGTTAGGTTGCAC 332
Query 423 AAAGAATGTATCTTATGGGAAAGAGTTAACT-CATGAAAAGGAATGCATG-TTCTCTCA- 479
| |||||| |||||||||||| ||| || | ||||| |||||||| | | |||||||
Sbjct 333 CACGAATGTCTCTTATGGGAAACAGTCAA-TACATGAGAAGGAATGTA-GCTTCTCTCTC 390
Query 480 -T-TGCGCCTGCCCTGC-ATTGGATTGCAATTACACTAGCTCATACAAGGATC-TGTACA 535
| ||| | |||||| | | || ||||||||||||||||||||| | | |||||
Sbjct 391 CTCTGCTCATGCCCT-CTACAAGACTGCAATTACACTAGCTCATACTCTAA-CATGTAC- 447
Query 536 C-TCACTATCGTATT-ACC-CATATGGAAATAAACCAGAT-TAATACGTTCAT-TTGTGA 590
| ||||| | || | ||| | | | || ||| | || | | |||| | ||||||
Sbjct 448 CGTCACTTTATTAGTGACCACC-A-G-AAC-AAAT-ATATGT--T--GTTC-TGTTGTGA 497
Query 591 CA-TTCC-CTTAAGTGTCCGGATGAACATCAGCAAAAAGATATTGATTAGAACGGAACAC 648
|| || | || || ||| |||||||| || ||| | ||||||||||||||| ||| |
Sbjct 498 CACTTTCGCT-AA-TGTTCGGATGAATATAAGCGATAAGATATTGATTAGAGTTGAATA- 554
Query 649 TTGACG-AATCATT-TGTTTGCAGTGCAGTGTTTCAGGGAGCCGTATGGTGTGTATGTAA 706
| || | || | | ||||||||||||| ||||| | |||||||| |||||| |||||||
Sbjct 555 T-GAGGTAAGCCTAGTGTTTGCAGTGCAATGTTTTAAGGAGCCGTGTGGTGTCTATGTAA 613
Query 707 CTGTAAGCTGCATTGCGCCATCTTCTCCAGAATTAAGTCAGTACTCATATGC-TCTCTCT 765
|||||||||||||||| || |||| || |||| || | | | |||||| | ||||||
Sbjct 614 CTGTAAGCTGCATTGCACCGTCTTTTCAAGAAGTAGGAAAATTCTCATAC-CATCTCTCC 672
Query 766 TACACTGTCGATGGACACACTGTGATTTACCAATCACC-AGAGGTGAAGAGGGTTCTTAA 824
|||||||| ||||| |||||| ||| |||| ||||||| | || |||||| ||||||||
Sbjct 673 TACACTGTGGATGGGCACACTATGACTTACGAATCACCGAAAG-TGAAGAAAGTTCTTAA 731
Query 825 -GTTGAGTTTTCAAACCCC-GCAAGAGAATTTCATGTTGATTCC-CAACAGTTTATTGCG 881
|| ||| | |||| || | |||||| |||||||||||| || || ||||||||||||
Sbjct 732 AGT-GAGCTACCAAATACCTG-AAGAGAGTTTCATGTTGATCCCTCA-CAGTTTATTGCG 788
Query 882 TGGTGATGTGTTGGAAATGAGGATTAGCGTCAAGAAGTTGAA-CAAAGAGTAAGAA 936
|||||| | ||||| |||| | || || |||||||||||| ||| |||||||||
Sbjct 789 TGGTGAAATTTTGGATATGAAGCTTTGCATCAAGAAGTTGAGGCAA-GAGTAAGAA 843
> Ahg356210 jgi|Araly1|356210|fgenesh1_pg.C_scaffold_7003383
Length=1227
Score = 329 bits (178), Expect = 2e-89
Identities = 576/759 (76%), Gaps = 63/759 (8%)
Strand=Plus/Plus
Query 181 AAGAAACGCTCGACAATGCT-AATGGATCTGGA-GATTCTCGATTGTCCCATTTGCTACG 238
|||| ||||||| ||||| ||| | |||| | |||| || ||||| ||||||| |
Sbjct 466 AAGACACGCTCGGGGATGCTGCTTGG-TTTGGATG-TTCTGGACTGTCCTATTTGCTTTG 523
Query 239 AAGCTTTCACAATTCCCATCTTCCAGTGTGATAATGGACATTTGGCTTGTTCTTCTTGCT 298
| || || || ||||| ||||| |||||||| ||||||||| | ||||||||||||||||
Sbjct 524 AGGCATTGACTATTCCTATCTTTCAGTGTGACAATGGACATATAGCTTGTTCTTCTTGCT 583
Query 299 GTCCCAAACTAAATAACAAATGCCCTGCGTGTACTTCGCCTGTTGGCCACAATCGCTGCA 358
||| |||||| | ||| || |||||| | ||| |||| ||||||||||||||||||||||
Sbjct 584 GTCACAAACTGAGTAATAAGTGCCCTACATGTGCTTCTCCTGTTGGCCACAATCGCTGCA 643
Query 359 GAGCAATGGAGAGTGTTCTTGAATC-GATCTT-GATCCCGTGTCCGAA-CGCCAAGTTAG 415
|||||||||||||||| || ||||| | |||| | |||| || ||||| ||||||||| |
Sbjct 644 GAGCAATGGAGAGTGTGCTCGAATCAG-TCTTTG-TCCCATG-CCGAAACGCCAAGTTTG 700
Query 416 GTTGCAA-AAAGAATGTATCTTATGGGAAAG-AGTTAACTCATGAAAAGGAATGCA-TGT 472
| |||| ||| ||||| ||||||||||||| | | |||||||||||| ||||||| | |
Sbjct 701 GATGCACCAAA-AATGTGTCTTATGGGAAAGTA-TCAACTCATGAAAAAGAATGCACT-T 757
Query 473 TCTCTCATTGCGCCTGCCCTGCATTGGATTGCAATTACACTAGCTCATACAAGGATC-TG 531
||||||| ||| |||||||||||||||| ||||||||||| | |||||||| || | |
Sbjct 758 TCTCTCAATGCTCCTGCCCTGCATTGGACTGCAATTACACCGGATCATACAATGA-CATC 816
Query 532 TACACTCACTATCGT--ATTACCCATATGGAAATAAA-CCAGAT-TA-ATACGTTCATTT 586
|||| ||||| | || || ||| || | || ||| ||| || || || | || | |
Sbjct 817 TACAGTCACTTT-GTTGATAACC-ATC-GTAAC-AAATCCACATCTATATCCTTTG-TCT 871
Query 587 GTGACA-TTCCCTTAAGTGTCCGGATGAACATCAGCAAAAAG-A-TATTG-ATTAGAAC- 641
| | ||| || | ||| | ||||||||| | | | | | |||| | || |
Sbjct 872 GCGGTGGTTCTGTTGA-TGTTCAGATGAACAT-ATCTACCGGTAATATTCTAGTACTTCA 929
Query 642 GGAACACTT-GACGA-A-TCATTTGTTTGCAG-TGCAGTGTTTC-AGGGAGCCG-TATGG 695
|||| || || | | | ||| |||||| | ||||||||||| | ||||| | |||
Sbjct 930 GGAAT-CTAAGAAGGGACT-ATT-GTTTGC-GCTGCAGTGTTTCTACA-AGCCGCT-TGG 983
Query 696 TGTGTATGTAACTGTAAGCTGCATTGCGCCATCTTCTCCAGAATTAAGTCAG-TACTCAT 754
| ||||||| ||||| || |||||||| |||||| |||| ||| || | || | |||
Sbjct 984 TTTGTATGTGACTGTTAGATGCATTGCACCATCTACTCCTGAACTAGGGAAGCTTG-CAT 1042
Query 755 AT-GCTCTCT-CTTACACTGTCGATGGACACACTGTGATTTACCAA-TCACCAGAGGTGA 811
|| | ||||| || || || | |||||||| ||| | | ||| || |||||||| ||||
Sbjct 1043 ATTG-TCTCTACT-ACTCTATGGATGGACAAACTCTTACATAC-AAGTCACCAGAAGTGA 1099
Query 812 AGAGGGTTCTT-AAGTTGAGTTTTCAAACCCCGCAAGAGAATTTCATGTT-GATTCC-CA 868
||| ||||||| |||| ||| | | ||||||| ||||| ||||||||||| | | || ||
Sbjct 1100 AGAAGGTTCTTGAAGT-GAGCTCTGAAACCCCTCAAGACAATTTCATGTTTG-TCCCTCA 1157
Query 869 ACAGTTTATTGCGTGGTGA-TGTGTTGGAAATGAGGATT 906
| ||| || |||||||| | | | ||| |||| ||||
Sbjct 1158 -CTCTTTGTTACGTGGTGAATTTCT-GGAGATGAAGATT 1194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43231387878
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5