BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37930.1
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494183 jgi|Araly1|494183|fgenesh2_kg.7__3616__AT5G37930.1 1428 0.0
> Ahg494183 jgi|Araly1|494183|fgenesh2_kg.7__3616__AT5G37930.1
Length=1067
Score = 1428 bits (773), Expect = 0.0
Identities = 979/1076 (91%), Gaps = 23/1076 (2%)
Strand=Plus/Plus
Query 19 ATGGCGAGATTCTCAGTTTGCGGAGGAGACGACGGAGAAGGACC-A--AGTAACAACAAT 75
|||||||||||||||||||| ||||||||||||||||||||||| | | |||||||||
Sbjct 2 ATGGCGAGATTCTCAGTTTGTGGAGGAGACGACGGAGAAGGACCTAGCAACAACAACAAT 61
Query 76 CACCAATCCCGGAAAAGGCAACGACTTCCTTCAATCGATGAAAATGAAGAAGACGCCGAG 135
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 62 CATCAATCCCGGAAAAGGCAACGACTTCCTTCAATCGATGAAAACGAAGAAGACGCCGAA 121
Query 136 ACCTCCGACGCCGGAAGTTCCGGT---GAAGAAGACGAAGACGAAACTCAGAATCAAGGA 192
|||||||||||||||||||||||| |||||||||||||| |||||||| |||| ||||
Sbjct 122 ACCTCCGACGCCGGAAGTTCCGGTGAAGAAGAAGACGAAGAAGAAACTCAAAATCGAGGA 181
Query 193 ATGAGACCAGAATCTGAGGATCGAGGATCAACGAGC---GATGATAGCGATCGTGAAGTT 249
|||||| | |||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 182 ATGAGAACGGAATCTGAAGATCGAGGATCAACGAGCGATGATGATAGCGATCGTGAAGTT 241
Query 250 GTGATTGAGGAGAGACGATTTGGTAAATTTGTAAATAGTCAGAGTTCTTCTTCTAGCAAA 309
|||| || |||||||||||||||||||| |||||||||||||| ||| ||||||
Sbjct 242 TTGATAGAAGAGAGACGATTTGGTAAATTCGTAAATAGTCAGAG------TTCGAGCAAA 295
Query 310 GATTCGCCTCTTTCTGTAACGTTATTGGATCCAGATGTTCTTGATTGTCCTATTTGTTGC 369
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 GATTCGCCTCTTTCTGTGACGTTATTGGATCCAGATGTTCTTGATTGTCCTATTTGTTGC 355
Query 370 GAGCCATTGAAGATTCCTATCTTTCAGTGTGATAATGGTCATCTGGCTTGTACTTTGTGC 429
||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||
Sbjct 356 GAGCCATTGAAGATTCCAATCTTTCAGTGTGATAATGGTCATTTGGCGTGTACTTTGTGC 415
Query 430 TGCACCAAAGTGAGGAACAGATGCCCGTCGTGTACATTACCGATAGGTTATGTTCGTTGC 489
||||| |||||||||||| |||||||||||||||||||||| || ||||| |||||||||
Sbjct 416 TGCACAAAAGTGAGGAACCGATGCCCGTCGTGTACATTACCCATTGGTTACGTTCGTTGC 475
Query 490 AGAGCTATGGAGAAGGTTATAGAAGCATCTAGAGTCTCGTGTCTAAATGCCAAATACGGG 549
||||| |||||||||||||||||| ||||||||||||| |||| |||||| |||||||||
Sbjct 476 AGAGCGATGGAGAAGGTTATAGAAACATCTAGAGTCTCATGTCCAAATGCTAAATACGGG 535
Query 550 TGCAAGGAGAGTACCTCCTATGGAAACCGTTTTAGTCATGAGCAGGTATGTGTTTTCACC 609
|| || |||| |||| ||||||||||||||||||| |||||| |||| |||||||| |||
Sbjct 536 TGTAAAGAGAATACCGCCTATGGAAACCGTTTTAGCCATGAGAAGGTGTGTGTTTTTACC 595
Query 610 CCTTGTTCTTGCCCCATACTTGACTGCCACTACACTGGGTATTACAAGGATCTCAACAAT 669
||||||| ||| |||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 596 CCTTGTTTTTGTCCCATAGTTGACTGCAACTACTCTGGGTATTACAAGGATCTCAACAAC 655
Query 670 CACGTCCGTGCTGAACACAAAGATGATCTGATCTCGTTCGTGTGGAATACTCGTTTAACC 729
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 656 CACGTCCGTGCTGAACACAAAGATGACCTGATCTCGTTCGTGTGGAATACTCGTTTAACT 715
Query 730 ATT-AGCTTGGACCTCAATAAGAAGACCACAATTCTTCAGGAAGAAAACGATGGGCATGT 788
|| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 716 -TTGAGCTTGGACCTCAATGAGAAGACCACAATTCTTCAGGAAGAAAACGATGGGGATGT 774
Query 789 GATTGTAGTCCAAGTTTTCAGGGCTTTGCATGCTGTGTATGTCAGTGTGAGCTGTATTGC 848
|||||| || |||||||||| ||||||||| ||||||||| | |||||||||||||||||
Sbjct 775 GATTGTTGTTCAAGTTTTCAAGGCTTTGCACGCTGTGTATCTTAGTGTGAGCTGTATTGC 834
Query 849 ACCTTTGACACCGGGAGTGGGTAGGTTATCATGCCGTCT-TGCGAAGATAACCGTTGATA 907
||||||| ||||||||||||||| ||| |||||| | || | ||| |||||||||| ||
Sbjct 835 ACCTTTGGCACCGGGAGTGGGTAAGTTCTCATGCGGACTGTT-GAATATAACCGTTGGTA 893
Query 908 GCTTACTGAAGCAAGGATTTATGGTGAAGAACATACAAAAAGTGACGAATGAAC-ATCCC 966
|||||||||||||||||||||||||||||||| | ||||||||||| ||||||| | |||
Sbjct 894 GCTTACTGAAGCAAGGATTTATGGTGAAGAACGTTCAAAAAGTGACTAATGAACTA-CCC 952
Query 967 GAAGATGGTTTCATGTTGATTCCTTCCTATTTGTTCTCTGGTAATGACAACTTGAATCTG 1026
||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||| ||
Sbjct 953 GAAGATGGTTTTATGTTGATTCCTTCTTATTTGTTGTCTGGTAATGAGAACTTGAATTTG 1012
Query 1027 CAGATTTGGATCGGCC-ATGGCCGGATCTTTGTTCATTCGTGATTATGTAAAGAAC 1081
||||||||||| |||| | |||||| ||||||||||||| ||||||||||||||||
Sbjct 1013 CAGATTTGGATTGGCCGA-GGCCGGGTCTTTGTTCATTCCTGATTATGTAAAGAAC 1067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41248996194
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5