BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37950.1
Length=1267
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948088 jgi|Araly1|948088|scaffold_704317.1 1509 0.0
Ahg494179 jgi|Araly1|494179|fgenesh2_kg.7__3612__AT5G37950.2 1502 0.0
Ahg347751 jgi|Araly1|347751|fgenesh1_pg.C_scaffold_5001143 204 2e-51
> Ahg948088 jgi|Araly1|948088|scaffold_704317.1
Length=1393
Score = 1509 bits (817), Expect = 0.0
Identities = 1049/1159 (91%), Gaps = 23/1159 (2%)
Strand=Plus/Plus
Query 121 GAGGACAA-AGAAA-TCGGAAATGGAGGAAACATC-GGAGAGAAGGAGAAGGGTAGT-TT 176
||||| || ||||| | |||||||||||||| | | ||||| ||||||||| | || ||
Sbjct 3 GAGGA-AAGAGAAATTTGGAAATGGAGGAAA-AGCAAGAGAGGAGGAGAAGGATCGTGTT 60
Query 177 AGGTTCCAGTTCCAGCTCAAGGACACATATCTCCGATGATGCAACTTGGGAGAGCCCATT 236
| |||||| |||||| ||||||||||||||||| ||||||||||| | |||||||| ||
Sbjct 61 -GATTCCAGCTCCAGCACAAGGACACATATCTCCAATGATGCAACTCGCGAGAGCCC-TT 118
Query 237 C-TTTAAAGGGTTTCTCGATTACAGTTGCTCAGACTAAGTTCAATTACTTAAACCCTTCC 295
| |||||||||||||| ||||| ||||||||||| |||||||||||||| || |||||
Sbjct 119 CACTTAAAGGGTTTCTCCATTACGGTTGCTCAGACCAAGTTCAATTACTTGAAGCCTTCA 178
Query 296 AAAGACTTAGCTGATTTTCAGTTCATCACCATCCCAGAGAGCTTACCAGCCTCGGATCTG 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AAAGACTTAGCTGATTTTCAGTTCATCACCATCCCAGAGAGCTTACCAGCCTCGGATCTG 238
Query 356 AA-AACTCTTGGGCCAATTTGGTTTATTATTAAACTCAACAAAGAGTGTGAAATTAGCTT 414
|| | ||| |||||| |||||||| |||||||| |||||||||||||||| |||||||
Sbjct 239 AAGGA-TCTAGGGCCAGTTTGGTTTCTTATTAAAATCAACAAAGAGTGTGAGGTTAGCTT 297
Query 415 CAAGAAGTGTTTAGGTCAGTTTTT-GCTGCAACAACAGGAAGAGATCGCATGTGTCATCT 473
|||||||||||| ||||| ||||| || ||||||||| ||||||||||||||||||||||
Sbjct 298 CAAGAAGTGTTTGGGTCAATTTTTGGC-GCAACAACAAGAAGAGATCGCATGTGTCATCT 356
Query 474 ACGACGAGTTCATGTACTTTGCTGAAGCTGCAGCCAAAGAGTTTAACCTTCCCAAAGTTA 533
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||
Sbjct 357 ACGACGAGTTCATGTACTTTGCTGAAGCTACAGCCAAAGAGTATAACCTTCCCAAAATTA 416
Query 534 TTTTCAGTACCGAAAATGCGACGGCTTTTGCTTGTCGCTCTGCCATGTGCAAACTCTATG 593
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 417 TTTTCAGTACCGAAAATGCAACGGCTTTTGCTTGTCGCTATGCCATGTGCAAACTCTATG 476
Query 594 CAAAAGATGG-TATAGCTCCCCTTACAGAAGGATGTGGGCGAGAAGAGGAGCTAGTGCCA 652
|||||||||| | | |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 477 CAAAAGATGGCT-TGGCTCCCCTCAAAGAAGGATGTGGGCGAGAAGAGGAGCTAGTGCCA 535
Query 653 GAGTTGCATCCCCTTAGATACAAAGACCTACCAACTTCAGCATTTGCACCAGTAGAAGCC 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 GAGTTGCATCCCCTTAGATACAAAGACCTACCAACTTCAGCATTTGCACCAGTAGAAGCC 595
Query 713 TCAGTGGAAGTGTTTAAAAGTTCATGTGAGAAAGGGACAGCTTCCTCTATGATAATCAAC 772
||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 596 TCAGTGGAAGTGTTTAAAAGTTCATGTGATATAGGCACAGCTTCCTCTATGATAATCAAC 655
Query 773 ACAGTGAGTTGTCTAGAGATTTCATCCTTGGAGTGGCTTCAACAAGAACTTAAGATTCCG 832
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 656 ACAGTGAGTTGTCTAGAGATTTCATCCTTGGACTGGCTTCAACAAGAACTTAAAATTCCA 715
Query 833 ATATATCCTATAGGCCCACTTTACATGGTTTCTTCAGCTCCTCCTACGAGTCTACTAGAC 892
||||||||||||||||| ||| ||||| | |||||||||||||||| |||||| ||||
Sbjct 716 ATATATCCTATAGGCCCTCTTCACATGATGGCTTCAGCTCCTCCTACAAGTCTAATAGAA 775
Query 893 GAGAATGAGAGTTGCATTGATTGGCTGAACAAACAAAAGCCAAGTTCTGTCATATACATA 952
||| ||||||| ||||| ||||||||||||||||||||||| || || || || ||||||
Sbjct 776 GAGGATGAGAGCTGCATAGATTGGCTGAACAAACAAAAGCCGAGCTCGGTGATTTACATA 835
Query 953 AGCTTGGGGAGCTTTACTTTGTTGGAAACTAAAGAAGTGTTGGAAATGGCTTCCGGGTTA 1012
|| ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 836 AGTTTGGGAAGCTTTACTTTGATGGAAACTAAAGAAGTGTTGGAAATGGCTTCGGGGTTG 895
Query 1013 GTTAGTAGTAACCAATACTTCTTGTGGGCGATCCGACCTGGATCCATACTTGGTTCTGAA 1072
||||||||||||||| |||||||||||| ||| |||| || ||||| ||||||||||||
Sbjct 896 GTTAGTAGTAACCAACACTTCTTGTGGGTGATTAGACCCGGGTCCATCCTTGGTTCTGAA 955
Query 1073 TTATCTAATGAAGAATTGTTTAGTATGATGGAAATACCGGACCGAGGCTACATTGTGAAA 1132
|| |||||||| || || ||||||| |||||||||| | || ||||||||||||||||||
Sbjct 956 TTGTCTAATGAGGAGTTATTTAGTAAGATGGAAATATCTGATCGAGGCTACATTGTGAAA 1015
Query 1133 TGGGCTACACAGAAA-CAAGTGCTTGCACATGCAGCGGTTGGAGCGTTTTGGAGTCATTG 1191
|||||| |||| ||| ||||| ||||||||| | ||||||||||| ||||||||||||||
Sbjct 1016 TGGGCTCCACA-AAAGCAAGTTCTTGCACATTCTGCGGTTGGAGCATTTTGGAGTCATTG 1074
Query 1192 TGGATGGAACTCGACCCTAGAGAGTATTGGG-GAAGGAATTCCGAT--T--GTAGGCCTT 1246
||||||||||||||| |||||||| || ||| |||||| ||||||| | |||||||||
Sbjct 1075 TGGATGGAACTCGACTCTAGAGAGCAT-GGGTGAAGGAGTTCCGATGATTTGTAGGCCTT 1133
Query 1247 TTACTACTGATCAAAAGGT 1265
|||||||||||||||||||
Sbjct 1134 TTACTACTGATCAAAAGGT 1152
> Ahg494179 jgi|Araly1|494179|fgenesh2_kg.7__3612__AT5G37950.2
Length=1053
Score = 1502 bits (813), Expect = 0.0
Identities = 978/1057 (93%), Gaps = 14/1057 (1%)
Strand=Plus/Plus
Query 216 TGCAACTTGGGAGAGCCCAT-TCTTTAAAGGGTTTCTCGATTACAGTTGCTCAGACTAAG 274
||||||||| |||||||| | | ||||||||||||||| ||||||||||||||||| |||
Sbjct 2 TGCAACTTGCGAGAGCCC-TATATTTAAAGGGTTTCTCCATTACAGTTGCTCAGACAAAG 60
Query 275 TTCAATTACTTAAACCCTTCCAAAGACTTAGCTGATTTTCAGTTCATCACCATCCCAGAG 334
|||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 61 TTCAATTACTTAAACCCTTCAAAAGACTTGGCTGATTTTCAGTTTATCACCATCCCAGAG 120
Query 335 AGCTTACCAGCCTCGGATCTGAA-AACTCTTGGGCCAATTTGGTTTATTATTAAACTCAA 393
|||||||||||||||||| |||| || ||| |||||| |||||||| |||||||| ||||
Sbjct 121 AGCTTACCAGCCTCGGATTTGAAGAA-TCTAGGGCCAGTTTGGTTTCTTATTAAAATCAA 179
Query 394 CAAAGAGTGTGAAATTAGCTTCAAGAAGTGTTTAGGTCAGTTTTTGCTGCAACAACAGGA 453
|||||||||||| |||||||||||||||||||| |||||||| ||| |||||||||| ||
Sbjct 180 CAAAGAGTGTGAGATTAGCTTCAAGAAGTGTTTGGGTCAGTTGTTGTTGCAACAACAAGA 239
Query 454 AGAGATCGCATGTGTCATCTACGACGAGTTCATGTACTTTGCTGAAGCTGCAGCCAAAGA 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGAGATCGCATGTGTCATCTACGACGAGTTCATGTACTTTGCTGAAGCTGCAGCCAAAGA 299
Query 514 GTTTAACCTTCCCAAAGTTATTTTCAGTACCGAAAATGCGACGGCTTTTGCTTGTCGCTC 573
|||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 300 GTTTGACCTTCCCAAAGTTATTTTCAGTACCGAAAATGCAACGGCTTTTGCTTCTCGCTC 359
Query 574 TGCCATGTGCAAACTCTATGCAAAAGATGG-TATAGCTCCCCTTACAGAAGGATGTGGGC 632
|||||||||||||||||||||||||||||| | | ||||| || | ||||||||||||
Sbjct 360 TGCCATGTGCAAACTCTATGCAAAAGATGGCT-TGGCTCCTCTCAAAGAAGGATGTGGAA 418
Query 633 GAGAAGAGGAGCTAGTGCCAGAGTTGCATCCCCTTA-GATACAAAGACCTACCAACTTCA 691
| || ||||||||||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct 419 GTGAGGAGGAGCTAGTGCCAGAGTTGCATCCC-TTAAGGTACAAAGACCTACCAACTTCA 477
Query 692 GCATTTGCACCAGTAGAAGCCTCAGTGGAAGTGTTTAAAAGTTCATGTGAGAAAGGGACA 751
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 478 GCATTTGCACCAGTAGAAGCCTCAGTGGAAGTGTTTAAAAATTCATGTGAGAAAGGGACA 537
Query 752 GCTTCCTCTATGATAATCAACACAGTGAGTTGTCTAGAGATTTCATCCTTGGAGTGGCTT 811
|||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||
Sbjct 538 GCTTCCTCTATGATAATCAACACAGTTCGGTGTCTAGAGATTTCATCTTTGGAGTGGCTT 597
Query 812 CAACAAGAACTTAAGATTCCGATATATCCTATAGGCCCACTTTACATGGTTTCTTCAGCT 871
||||||||||| || ||||| ||||||||| |||| || ||| |||||||||||||||||
Sbjct 598 CAACAAGAACTCAAAATTCCAATATATCCTGTAGGACCTCTTCACATGGTTTCTTCAGCT 657
Query 872 CCTCCTACGAGTCTACTAGACGAGAATGAGAGTTGCATTGATTGGCTGAACAAACAAAAG 931
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 658 CCTCCTACGAGTCTACTAGAAGAGAATGAGAGTTGCATAGATTGGCTGAACAAACAAAAG 717
Query 932 CCAAGTTCTGTCATATACATAAGCTTGGGGAGCTTTACTTTGTTGGAAACTAAAGAAGTG 991
||||| || || ||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 718 CCAAGCTCAGTGATATACATAAGCTTGGGAAGCTTTACTTTGATGGAAACTAAAGAAGTG 777
Query 992 TTGGAAATGGCTTCCGGGTTAGTTAGTAGTAACCAATACTTCTTGTGGGCGATCCGACCT 1051
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 778 TTGGAAATGGCTTTTGGGTTGGTTAGTAGTAACCAATACTTCTTGTGGGCGATCCGACCT 837
Query 1052 GGATCCATACTTGGTTCTGAATTATCTAATGAAGAATTGTTTAGTA-TGATGGAAATACC 1110
|| |||||| |||||||||||||||||||||| ||||| ||||||| | || ||||||||
Sbjct 838 GGCTCCATAGTTGGTTCTGAATTATCTAATGAGGAATTATTTAGTACT-ATTGAAATACC 896
Query 1111 GGACCGAGGCTACATTGTGAAATGGGCTACACAGAAACAAGTGCTTGCACATGCAGCGGT 1170
||| |||||||||||||||||||||||| | ||||||||||||||||||||| | ||| |
Sbjct 897 GGATCGAGGCTACATTGTGAAATGGGCTCCGCAGAAACAAGTGCTTGCACATCCTGCGAT 956
Query 1171 TGGAGCGTTTTGGAGTCATTGTGGATGGAACTCGACCCTAGAGAGTATTGGGGAAGGAAT 1230
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 957 TCGAGCGTTTTGGAGTCATTGTGGATGGAACTCGACCCTAGAGAGTATGGGGGAAGGGAT 1016
Query 1231 TCCGAT--T--GTAGGCCTTTTACTACTGATCAAAAG 1263
|||||| | ||||||||||||||||||||||||||
Sbjct 1017 TCCGATGATTTGTAGGCCTTTTACTACTGATCAAAAG 1053
> Ahg347751 jgi|Araly1|347751|fgenesh1_pg.C_scaffold_5001143
Length=753
Score = 204 bits (110), Expect = 2e-51
Identities = 198/238 (83%), Gaps = 16/238 (7%)
Strand=Plus/Plus
Query 384 TTAAACTCAACAAAGAGTGTGAAATTAGCTTCAAGAAGTGTTTAGGTCAGTTTTTGCTGC 443
|||| ||||||| |||||| | | ||||||||| | || || |||||||| ||||||
Sbjct 200 TTAAGCTCAACATAGAGTGCCAGGTGAGCTTCAAGGACTGCTTGGGTCAGTTGCTGCTGC 259
Query 444 AACAACAGGAA-GAGATCGCATGTGTCATCTACGACGAGTTCATGTACTTTGCTGAAGCT 502
||||| || || |||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 260 AACAA-AGTAATGAGATCTCATGTGTCATCTACGACGAGTTCTTGTACTTTGCTGAAGCT 318
Query 503 GCAGCCAAAGAGTTTAACCTTCCCAAA-GTTATTTTCAGTACCGAA-AA-TGCGACGGCT 559
||||||||||||||||| ||||| ||| ||||||||||| || || || ||| ||||||
Sbjct 319 GCAGCCAAAGAGTTTAAGCTTCC-AAACGTTATTTTCAGCAC--AACAAGTGCCACGGCT 375
Query 560 TTTGCTTGTCGCTCTGCCATGTGCAA-A-C-TCTATGCAAA-AGATGGTATAGCTCCC 613
|||| ||||||||||| || | ||| | | |||||| ||| | | || |||||||||
Sbjct 376 TTTGTTTGTCGCTCTGT-AT-T-CAACAACGTCTATGGAAACA-ACGGCATAGCTCCC 429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47348662914
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5