BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37970.1
Length=1239
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330654 jgi|Araly1|330654|fgenesh1_pm.C_scaffold_7002881 1768 0.0
> Ahg330654 jgi|Araly1|330654|fgenesh1_pm.C_scaffold_7002881
Length=1236
Score = 1768 bits (957), Expect = 0.0
Identities = 1151/1243 (93%), Gaps = 19/1243 (2%)
Strand=Plus/Plus
Query 1 ATGTTGAGTGCCTTTTGGGGTCATGCATCAGCTATTGCTATAGCTTCACCAGTTGTCAGC 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1 ATGTTGAGTGCTTTTTGGGGTCATGCATCAGCTATTGCTATAGCTTCACCAGTGGCCAGC 60
Query 61 ATTGTGGGTTTTCAGGGTGATCGTACTACGATAAGACGACCAACATACGGAGAGATGAAA 120
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 61 ATTGTGGGTTTTCAAGGTGATCGTACTACCATAAGGCGACCAACATACGGAGAGATGAAA 120
Query 121 TTTGTGGACGTAGTTGAAAGACCTAGAGAGATGCCAACATTTCCTCAATCGTTTCCAATG 180
|||||||| || ||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 121 TTTGTGGAAGTCGTTGAAAAACAAAGAGAAATGCCAACATTTCCTCAATCGTTTCCAATG 180
Query 181 AACGGTGGTGATGGTCCGCACAGTTACATCCACAATTCTTCCTATCAAAAAGTGGCGATC 240
||||||||||||||||||||||||||| |||||||||| || ||||||||||| |||||
Sbjct 181 AACGGTGGTGATGGTCCGCACAGTTACCTCCACAATTCCTCTTATCAAAAAGTCGCGATA 240
Query 241 GATGGCGTTAAAGAAAGGACAAGCGAAGCGATCTTAGAAAAACTCGATCTTGAATTCCTC 300
||||||| ||||||||||||||| ||||| |||||||||||||||||||||||| ||||
Sbjct 241 GATGGCGCTAAAGAAAGGACAAGGGAAGCAATCTTAGAAAAACTCGATCTTGAACTCCTG 300
Query 301 AACCGTAACTCTGAAGAAAATATCTTGAGAATTGTGGATTTTGGTTGTTCCATTGGACCT 360
|||| ||||||||| | ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 AACCATAACTCTGATGCAAATATCTTGAGAATTGCGGATTTTGGTTGTTCCATTGGACCT 360
Query 361 AACACGTTTGATGTTGTCCAAAATATCATTGATACAGTGaaacaaaaacgcctaaaagaa 420
|||||||| |||||||||||||||||||| ||||| ||||||||||||| || ||| ||
Sbjct 361 AACACGTTCGATGTTGTCCAAAATATCATAGATACGGTGAAACAAAAACATCT-AAA-AA 418
Query 421 aacaaaac-CTATATTGGTGCTCCTCTTGAGTTCCAAGTATGCTTCAATGATCAACCAAA 479
|| |||| | |||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 419 AA-GAAACAC-ATATTGGTGCTCCTCTCGAGTTCCAAGTGTGCTTCAATGATCAACCCAA 476
Query 480 CAATGATTTTAACACACTTTTTCGAACCCAACCGT-TCTTTTCCCGGA-AAGAATATTTT 537
|||||||||||||||||||||| |||| ||||| | |||||| || || |||||| ||
Sbjct 477 CAATGATTTTAACACACTTTTTAGAACTCAACC-TCTCTTTT-CCAGACGAGAATACTTA 534
Query 538 TCCGTGGGAGTTCCAGGCTCCTTCCATGGTAGAGTATTACCAAAAAATAGCCTCCATATA 597
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TCCGTCGGAGTTCCAGGCTCCTTCCATGGTAGAGTATTACCAAAAAATAGCCTCCATATC 594
Query 598 GGTCACACTTCCTATACACTCCACTGGCTTTCTA-ATGTTCCCCAACATGTTTGTGACAA 656
||||||||||| |||||||||||||||||||||| | |||||| ||||||||||||||||
Sbjct 595 GGTCACACTTCTTATACACTCCACTGGCTTTCTACA-GTTCCCAAACATGTTTGTGACAA 653
Query 657 GAAATCTCCGGCATTGAATAAAAGCTATATTCAATGTAATAATTTAGTAGATGAAGTGAC 716
||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 654 GAAATCTCCGGCATTGAATAAGAGCTATATTCAGTGTAATAATTTAGTTGATGAAGTGAC 713
Query 717 CAAGGCTTACAAGATCCAGTTCAGAAAAGATTTTGGAGGATTTCTTGAGGCAAGGGCGGA 776
||| |||||||||||||||||| |||||| | ||||| ||||||||||||||||||||
Sbjct 714 TAAGTCTTACAAGATCCAGTTCAAAAAAGACATAGGAGGTTTTCTTGAGGCAAGGGCGGA 773
Query 777 AGAGCTTGTCTCGGGCGGATTGATGATCCTTTCAGGACAATGCTTGCCCGATGGTATCCC 836
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 774 AGAGCTTGTCTCGGGCGGATTGATGATCCTATCAGGACAATGCTTGCCCGATGGTATCCC 833
Query 837 AAAGGCTTTGACATGGCAAGGTGTTGTGATCGATATGATTGGAGATTGTCTTATGGATCT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 AAAGGCTTTGACATGGCAAGGTGTTGTGATCGATATGATTGGAGATTGTCTTATGGATCT 893
Query 897 GGCTAAATTGGGAATAACAAGCAAGGAAAAGATCGAAC-TGTTCAGTTTACCCACATACA 955
|||||||||||||||||| ||||||||||||||||||| | |||||||| |||||||| |
Sbjct 894 GGCTAAATTGGGAATAACGAGCAAGGAAAAGATCGAACAT-TTCAGTTTGCCCACATATA 952
Query 956 TTCCGCATATTAGTGAATTCAAGGCAAACATTGAACAAAATGAAAACTTTAATG-TCGAG 1014
| |||||||||||||||||||||||||||||||| |||||||||||||||| | |||||
Sbjct 953 TCCCGCATATTAGTGAATTCAAGGCAAACATTGAGCAAAATGAAAACTTTAC-GATCGAG 1011
Query 1015 ACAATGGAGGAGATAAGTCATCCTATGGATTATATGCCATTAACCAACGACTTCATCACT 1074
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1012 ACAATGGAGGAGATAAGTCATCCTATGGATTATATGCCATTAACCAACGGCTTCATCACT 1071
Query 1075 TCCATGTTTCGAGCCATTCTCAATACAATTATCGAAGAACACTTTGGAGAAGGTGTGGTC 1134
|||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 1072 TCCATGTTTCGAGCCATTCTCAATACGATTATTGAAGAACACTTTGGAGACGGTGTGGTC 1131
Query 1135 AACGAGCTATTC-AGTCGACTTGCTAA-AAGGCTCGACAAGTACCCAATTGATTTCAAAA 1192
|| || |||||| | |||||||||||| ||| |||||||||||||| ||| |||||| ||
Sbjct 1132 AATGAACTATTCGA-TCGACTTGCTAAGAAG-CTCGACAAGTACCCGATTAATTTCAGAA 1189
Query 1193 GGTGTAAAAAGTATGTGAACTATTTTATCGTGCTTAAGAGAAA 1235
|||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1190 GGTGTAAAAAGTATGTGAACTATTTTATTGTGCTTAAAAGAAA 1232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46281221238
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5