BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G37980.1
Length=1252
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494182 jgi|Araly1|494182|fgenesh2_kg.7__3615__AT5G37980.1 1707 0.0
> Ahg494182 jgi|Araly1|494182|fgenesh2_kg.7__3615__AT5G37980.1
Length=1165
Score = 1707 bits (924), Expect = 0.0
Identities = 1076/1149 (94%), Gaps = 12/1149 (1%)
Strand=Plus/Plus
Query 43 AAAATGGCAAACATCAGCGTAGTGACGACAGCGACTAACAACCAGGTGATTCTCCGTAAC 102
|||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 AAAATGGCGAACATCGGCGTAGTGACGACAGCTACTAACAACCAGGTGATTCTCCGTAAC 60
Query 103 TACGTGAGTGGATTCCCTAAAGAATCCGACCTCTACATCGCCGCAACCACCGTTGACTTA 162
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 61 TACGTGAGTGGATTCCCTAAAGAATCCGACCTCTACATTGCCCCAACCACCGTTGACTTA 120
Query 163 CGTGTACCTCCCGGATCCATGGCGGTTCTAGTCAAGAATCTCTACTTATCTTGCGATCCT 222
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 121 CGTGTACCTCCCGGATCCATGGCGGTTCTAGTCAAGAACCTCTACTTATCTTGTGATCCT 180
Query 223 TTCAGCCGCATTCGCATGGAAAAACCCGACCCTTCGTCACCTGCTTCCGTCGCTCGCGCT 282
|||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||
Sbjct 181 TTCAGCCGCATTCGCATGGAAAAACCCGACCCTTCGTCCCCGGCTTCCGTCGCTCTCGCT 240
Query 283 TACTCTATCGGCAAGCCAATCTCTGGATTTGGAGTGGCTAAAGCAATAGATTCATG-TCA 341
|||||||| ||||||||||||||||| | ||||||||||||||||||||||||| | |||
Sbjct 241 TACTCTATAGGCAAGCCAATCTCTGGGTATGGAGTGGCTAAAGCAATAGATTCA-GATCA 299
Query 342 TCCAAATTACAAAACA-GGAGATTTACTTTGGGGAAGAGTTGGATGGGAAGAGTATAGTG 400
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCCAAATTACAAAA-ATGGAGATTTACTTTGGGGAAGAGTTGGATGGGAAGAGTATAGTG 358
Query 401 TTATTACTCCAACTCCTTCTTCACATTTCAAGATTCATCACACTGATGTTCCATTATCTT 460
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 359 TTATTACTCCAACTCCTTCTTCACATTTCAAGATTCATCACACCGATGTTCCATTATCTT 418
Query 461 TCTACACTGGACTTCTTGGTATTCCGGGTCTCACTGCGTATGTTGGGTTTTACGAGATAT 520
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 419 TCTACACTGGACTTCTTGGTATTCCGGGTCTAACTGCGTATGTTGGGTTTTACGAAATAT 478
Query 521 GTTCTCCGAAGAAAGGAGAGACTGTATTTGTATCAGCTGCTTCTGGTGCAGTAGGTCAAC 580
||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 479 GTTCTCCGAAGAATGGAGAGACTGTTTTTGTATCAGCTGCATCTGGTGCAGTAGGTCAAC 538
Query 581 TTGTAGGACAGTTTGCGAAGATGGCGGGATGCTATGTCGTTGGAAGTGCCAGTAGTAAAG 640
|||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 539 TTGTGGGACAGTTTGCGAAGATGGCCGGATGCTATGTCGTTGGAAGCGCCAGTAGTAAAG 598
Query 641 AGAAGGTTGATCTTCTCAAGACTAAGTTCGGGTATGACGAAGCTTTCAATTACAAGGAAG 700
|||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 599 AGAAGGTTGATCTTCTCAAGACTAAGTTTGGGTACGACGATGCTTTCAATTACAAGGAAG 658
Query 701 AGCATGATCTTAGTGCTGCCCTAAAGAGGTGTTTCCCAGAAGGAATAGACATATACTTTG 760
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 659 AGCATGATCTTAGTGCTGCCCTGAAGAGGTGTTTCCCAGAAGGAATAGACATATACTTTG 718
Query 761 AGAATGTGGGAGGTAAAATGTTAGACGCAGTGCTCGAAAACATGAGAACACATGGCCGAA 820
|||| |||||||| ||||||||||| |||||||| ||||||||||| |||||||| ||||
Sbjct 719 AGAACGTGGGAGGAAAAATGTTAGATGCAGTGCTTGAAAACATGAGGACACATGGGCGAA 778
Query 821 TCGCTGCGTGTGGAATGATCTCACAATACAATCTAAAGGAGCCAGAAGGTGTACATAACT 880
|||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 779 TCGCAGCGTGTGGAATGATCTCACAATACAATCTAAAGGAACCAGAAGCTGTACATAACT 838
Query 881 TAGCCAGCATTGTTTACAAACGGATTCGGGTTCAAGGTTTTGCAGCTGTAGAATTCTTTG 940
|||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||
Sbjct 839 TAGCCACCATTGTTTACAAACGGATTAGAGTTCAAGGTTTTGCAGCTGTCGAATTCTTTG 898
Query 941 ATAAATACTCCAAGTTTTTGGACTTTATACTTCCATATGTAAGAGAAGGAAAGATAACAT 1000
|||||||||||||||||||||| ||| | ||||| |||||||||||||||||||||||||
Sbjct 899 ATAAATACTCCAAGTTTTTGGATTTTGTGCTTCCTTATGTAAGAGAAGGAAAGATAACAT 958
Query 1001 ATGTCGAGGATATAGCTCAAGGACTTGAGAATGGACCTTCTGCTTTGATTGGACTCTTCC 1060
|||| ||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 959 ATGTGGAGGATATAGCGCAAGGACTCGAGAACGGACCTTCTGCTTTGATTGGTCTCTTCC 1018
Query 1061 ACGGTAAGAACGTCGGGAAACAACTTGTTGCGGTTGCTCGTGAGTGATATTGAATTAATA 1120
||||||||||||| |||||||||||||||| |||||||| |||||| ||||||||| |
Sbjct 1019 ACGGTAAGAACGTTGGGAAACAACTTGTTGAAGTTGCTCGCGAGTGAGATTGAATTAGCA 1078
Query 1121 AA-TGTGGTTATTAT-GACAAAGCTTTGTTTGTAGGTC-A-GAAATAATTGGACTATTGT 1176
|| ||||||||||| ||||| | || |||| | || | ||||||||||||||||| |
Sbjct 1079 AAATGTGGTTATTACCGACAATG-TTA-TTTG-ATTTCTAAGAAATAATTGGACTATTTT 1135
Query 1177 TAATTGTTT 1185
|||| ||||
Sbjct 1136 TAAT-GTTT 1143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46776819159
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5