BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G37980.1 Length=1252 Score E Sequences producing significant alignments: (Bits) Value Ahg494182 jgi|Araly1|494182|fgenesh2_kg.7__3615__AT5G37980.1 1707 0.0 > Ahg494182 jgi|Araly1|494182|fgenesh2_kg.7__3615__AT5G37980.1 Length=1165 Score = 1707 bits (924), Expect = 0.0 Identities = 1076/1149 (94%), Gaps = 12/1149 (1%) Strand=Plus/Plus Query 43 AAAATGGCAAACATCAGCGTAGTGACGACAGCGACTAACAACCAGGTGATTCTCCGTAAC 102 |||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 AAAATGGCGAACATCGGCGTAGTGACGACAGCTACTAACAACCAGGTGATTCTCCGTAAC 60 Query 103 TACGTGAGTGGATTCCCTAAAGAATCCGACCTCTACATCGCCGCAACCACCGTTGACTTA 162 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 61 TACGTGAGTGGATTCCCTAAAGAATCCGACCTCTACATTGCCCCAACCACCGTTGACTTA 120 Query 163 CGTGTACCTCCCGGATCCATGGCGGTTCTAGTCAAGAATCTCTACTTATCTTGCGATCCT 222 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 121 CGTGTACCTCCCGGATCCATGGCGGTTCTAGTCAAGAACCTCTACTTATCTTGTGATCCT 180 Query 223 TTCAGCCGCATTCGCATGGAAAAACCCGACCCTTCGTCACCTGCTTCCGTCGCTCGCGCT 282 |||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||| Sbjct 181 TTCAGCCGCATTCGCATGGAAAAACCCGACCCTTCGTCCCCGGCTTCCGTCGCTCTCGCT 240 Query 283 TACTCTATCGGCAAGCCAATCTCTGGATTTGGAGTGGCTAAAGCAATAGATTCATG-TCA 341 |||||||| ||||||||||||||||| | ||||||||||||||||||||||||| | ||| Sbjct 241 TACTCTATAGGCAAGCCAATCTCTGGGTATGGAGTGGCTAAAGCAATAGATTCA-GATCA 299 Query 342 TCCAAATTACAAAACA-GGAGATTTACTTTGGGGAAGAGTTGGATGGGAAGAGTATAGTG 400 |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TCCAAATTACAAAA-ATGGAGATTTACTTTGGGGAAGAGTTGGATGGGAAGAGTATAGTG 358 Query 401 TTATTACTCCAACTCCTTCTTCACATTTCAAGATTCATCACACTGATGTTCCATTATCTT 460 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 359 TTATTACTCCAACTCCTTCTTCACATTTCAAGATTCATCACACCGATGTTCCATTATCTT 418 Query 461 TCTACACTGGACTTCTTGGTATTCCGGGTCTCACTGCGTATGTTGGGTTTTACGAGATAT 520 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 419 TCTACACTGGACTTCTTGGTATTCCGGGTCTAACTGCGTATGTTGGGTTTTACGAAATAT 478 Query 521 GTTCTCCGAAGAAAGGAGAGACTGTATTTGTATCAGCTGCTTCTGGTGCAGTAGGTCAAC 580 ||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 479 GTTCTCCGAAGAATGGAGAGACTGTTTTTGTATCAGCTGCATCTGGTGCAGTAGGTCAAC 538 Query 581 TTGTAGGACAGTTTGCGAAGATGGCGGGATGCTATGTCGTTGGAAGTGCCAGTAGTAAAG 640 |||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 539 TTGTGGGACAGTTTGCGAAGATGGCCGGATGCTATGTCGTTGGAAGCGCCAGTAGTAAAG 598 Query 641 AGAAGGTTGATCTTCTCAAGACTAAGTTCGGGTATGACGAAGCTTTCAATTACAAGGAAG 700 |||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| Sbjct 599 AGAAGGTTGATCTTCTCAAGACTAAGTTTGGGTACGACGATGCTTTCAATTACAAGGAAG 658 Query 701 AGCATGATCTTAGTGCTGCCCTAAAGAGGTGTTTCCCAGAAGGAATAGACATATACTTTG 760 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 659 AGCATGATCTTAGTGCTGCCCTGAAGAGGTGTTTCCCAGAAGGAATAGACATATACTTTG 718 Query 761 AGAATGTGGGAGGTAAAATGTTAGACGCAGTGCTCGAAAACATGAGAACACATGGCCGAA 820 |||| |||||||| ||||||||||| |||||||| ||||||||||| |||||||| |||| Sbjct 719 AGAACGTGGGAGGAAAAATGTTAGATGCAGTGCTTGAAAACATGAGGACACATGGGCGAA 778 Query 821 TCGCTGCGTGTGGAATGATCTCACAATACAATCTAAAGGAGCCAGAAGGTGTACATAACT 880 |||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 779 TCGCAGCGTGTGGAATGATCTCACAATACAATCTAAAGGAACCAGAAGCTGTACATAACT 838 Query 881 TAGCCAGCATTGTTTACAAACGGATTCGGGTTCAAGGTTTTGCAGCTGTAGAATTCTTTG 940 |||||| ||||||||||||||||||| | |||||||||||||||||||| |||||||||| Sbjct 839 TAGCCACCATTGTTTACAAACGGATTAGAGTTCAAGGTTTTGCAGCTGTCGAATTCTTTG 898 Query 941 ATAAATACTCCAAGTTTTTGGACTTTATACTTCCATATGTAAGAGAAGGAAAGATAACAT 1000 |||||||||||||||||||||| ||| | ||||| ||||||||||||||||||||||||| Sbjct 899 ATAAATACTCCAAGTTTTTGGATTTTGTGCTTCCTTATGTAAGAGAAGGAAAGATAACAT 958 Query 1001 ATGTCGAGGATATAGCTCAAGGACTTGAGAATGGACCTTCTGCTTTGATTGGACTCTTCC 1060 |||| ||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||| Sbjct 959 ATGTGGAGGATATAGCGCAAGGACTCGAGAACGGACCTTCTGCTTTGATTGGTCTCTTCC 1018 Query 1061 ACGGTAAGAACGTCGGGAAACAACTTGTTGCGGTTGCTCGTGAGTGATATTGAATTAATA 1120 ||||||||||||| |||||||||||||||| |||||||| |||||| ||||||||| | Sbjct 1019 ACGGTAAGAACGTTGGGAAACAACTTGTTGAAGTTGCTCGCGAGTGAGATTGAATTAGCA 1078 Query 1121 AA-TGTGGTTATTAT-GACAAAGCTTTGTTTGTAGGTC-A-GAAATAATTGGACTATTGT 1176 || ||||||||||| ||||| | || |||| | || | ||||||||||||||||| | Sbjct 1079 AAATGTGGTTATTACCGACAATG-TTA-TTTG-ATTTCTAAGAAATAATTGGACTATTTT 1135 Query 1177 TAATTGTTT 1185 |||| |||| Sbjct 1136 TAAT-GTTT 1143 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46776819159 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5