BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38010.1
Length=1523
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948088 jgi|Araly1|948088|scaffold_704317.1 2089 0.0
Ahg494179 jgi|Araly1|494179|fgenesh2_kg.7__3612__AT5G37950.2 1434 0.0
Ahg494174 jgi|Araly1|494174|fgenesh2_kg.7__3607__AT5G38040.1 1083 0.0
Ahg496094 jgi|Araly1|496094|fgenesh2_kg.8__1910__AT5G59590.1 388 5e-107
Ahg347751 jgi|Araly1|347751|fgenesh1_pg.C_scaffold_5001143 158 1e-37
> Ahg948088 jgi|Araly1|948088|scaffold_704317.1
Length=1393
Score = 2089 bits (1131), Expect = 0.0
Identities = 1316/1404 (94%), Gaps = 17/1404 (1%)
Strand=Plus/Plus
Query 46 agagagaaatagaaatttggaaatggaggaaaagcaagagaggaggagaaggaTCGTGTT 105
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 AGAG-GAAAGAGAAATTTGGAAATGGAGGAAAAGCAAGAGAGGAGGAGAAGGATCGTGTT 60
Query 106 GATTCCCGCTCCAGCACAAGGACACATATCTCCGATGATGCAACTTGCAAGAGCCCTTCA 165
|||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 61 GATTCCAGCTCCAGCACAAGGACACATATCTCCAATGATGCAACTCGCGAGAGCCCTTCA 120
Query 166 CTTAAAGGGCTTCTCCATTACAGTTGCTCAAACCAAGTTCAATTACTTGAAGCCTTCAAA 225
||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 121 CTTAAAGGGTTTCTCCATTACGGTTGCTCAGACCAAGTTCAATTACTTGAAGCCTTCAAA 180
Query 226 AGACTTAGCTGATTTTCAGTTTATCACCATCCCAGAGAGCTTACCAGCCTCGGATCTTAA 285
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 181 AGACTTAGCTGATTTTCAGTTCATCACCATCCCAGAGAGCTTACCAGCCTCGGATCTGAA 240
Query 286 GAATCTAGGACCAGTTTGGTTTCTTCTTAAACTCAATAAAGAGTGTGAGTTTAGCTTCAA 345
| ||||||| ||||||||||||||| ||||| |||| |||||||||||| ||||||||||
Sbjct 241 GGATCTAGGGCCAGTTTGGTTTCTTATTAAAATCAACAAAGAGTGTGAGGTTAGCTTCAA 300
Query 346 GGAGTGTTTAGGTCAATTGTTGCTGCAAAAACAACTTATACCGGAAGAAGAGATCGCTTG 405
| ||||||| |||||||| ||| || |||| | | | ||||||||||||| ||
Sbjct 301 GAAGTGTTTGGGTCAATTTTTG--GC----GCAAC--A-A-C--AAGAAGAGATCGCATG 348
Query 406 TGTCATCTACGACGAGTTCATGTACTTTGCTGAAGCTGCAGCCAAAGAGTTTAACCTTCC 465
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 349 TGTCATCTACGACGAGTTCATGTACTTTGCTGAAGCTACAGCCAAAGAGTATAACCTTCC 408
Query 466 CAAAGTTATTTTCAGTACCGAAAATGCGACGGCTTTTGCTTGTCGCTCTGCCATGTGCAA 525
|||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 409 CAAAATTATTTTCAGTACCGAAAATGCAACGGCTTTTGCTTGTCGCTATGCCATGTGCAA 468
Query 526 ACTCTATGCAAAAGATGGTTTGGCTCCCCTTAAAGAAGGATGTGGGCGAGAAGAGGAGCT 585
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 469 ACTCTATGCAAAAGATGGCTTGGCTCCCCTCAAAGAAGGATGTGGGCGAGAAGAGGAGCT 528
Query 586 AGTGCCAAAGTTGCATCCCCTTAGATACAAAGACCTACCAACTTCAGCATTTGCACCAGT 645
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 AGTGCCAGAGTTGCATCCCCTTAGATACAAAGACCTACCAACTTCAGCATTTGCACCAGT 588
Query 646 AGAAGCCTCAGTGGAAGTGTTTAAAAGTTCATGTGATAAAGGGACAGCTTCCGCTATGAT 705
|||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||
Sbjct 589 AGAAGCCTCAGTGGAAGTGTTTAAAAGTTCATGTGATATAGGCACAGCTTCCTCTATGAT 648
Query 706 AATCAACACAGTGAGGTGTCTAGAGATATCATCCTTGGAGTGGCTTCAACAAGAACTTAA 765
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 649 AATCAACACAGTGAGTTGTCTAGAGATTTCATCCTTGGACTGGCTTCAACAAGAACTTAA 708
Query 766 GATTCCGATATATCCTATAGGCCCTCTTCACATGGTTTCTTCAGCTCCTCCTACGAGTCT 825
||||| ||||||||||||||||||||||||||| | |||||||||||||||| |||||
Sbjct 709 AATTCCAATATATCCTATAGGCCCTCTTCACATGATGGCTTCAGCTCCTCCTACAAGTCT 768
Query 826 ACTAGACGAGAATGAGAGTTGCATTGATTGGCTGAACAAACAAAAGCCGAGCTCGGTGAT 885
| |||| ||| ||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 769 AATAGAAGAGGATGAGAGCTGCATAGATTGGCTGAACAAACAAAAGCCGAGCTCGGTGAT 828
Query 886 TTACATAAGTTTGGGAAGCTTTACTTTGTTGGAAACTAAAGAAGTGTTGGAAATGGCTTC 945
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 829 TTACATAAGTTTGGGAAGCTTTACTTTGATGGAAACTAAAGAAGTGTTGGAAATGGCTTC 888
Query 946 GGGCTTGGTTAGTAGTAACCAACACTTCTTGTGGGTGATTCGACCCGGGTCCATACTTGG 1005
||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 889 GGGGTTGGTTAGTAGTAACCAACACTTCTTGTGGGTGATTAGACCCGGGTCCATCCTTGG 948
Query 1006 TTCTGAATTGACTAATGAGGAATTATTGAGTATGATGGAAATACCGGATCGAGGCTACAT 1065
|||||||||| |||||||||| ||||| |||| |||||||||| | ||||||||||||||
Sbjct 949 TTCTGAATTGTCTAATGAGGAGTTATTTAGTAAGATGGAAATATCTGATCGAGGCTACAT 1008
Query 1066 TGTGAAATGGGCTCCACAAAAGCAAGTGCTTGCACATTCTGCGGTTGGAGCATTTTGGAG 1125
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1009 TGTGAAATGGGCTCCACAAAAGCAAGTTCTTGCACATTCTGCGGTTGGAGCATTTTGGAG 1068
Query 1126 TCATTGTGGATGGAACTCGACTCTAGAGAGCATGGGTGAAGGAGTTCCGATGATTTGTAG 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 TCATTGTGGATGGAACTCGACTCTAGAGAGCATGGGTGAAGGAGTTCCGATGATTTGTAG 1128
Query 1186 GCCTTTTACTACTGATCAAAAGGTAAATGCGCGGTATGTGGAGTGTGTCTGGAGAGTTGG 1245
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1129 GCCTTTTACTACTGATCAAAAGGTAAATGCGCGGTACGTGGAGTGTGTCTGGAGAGTTGG 1188
Query 1246 GGTTCAAGTGGAGGGTGAACTAAAGAGAGGAGTAGTCGAGAGAGCTGTGAAGAGGTTACT 1305
|||||| ||||||||||| ||| ||| |||||||||||||||||||||||| |||||| |
Sbjct 1189 GGTTCACGTGGAGGGTGAGCTAGAGAAAGGAGTAGTCGAGAGAGCTGTGAAAAGGTTAAT 1248
Query 1306 GGTGGATGAAGAAGGAGAAGAGATGAAGTTGAGAGCTCTCAGTTTGAAAGAGAAACTCAA 1365
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1249 GGTGGATGAAGAAGGAGAGGAGATGAAGATGAGAGCTCTCAGTTTGAAAGAGAAACTCAA 1308
Query 1366 A-GTTTCTGTTCTACCGGGAGGTTCTTCACAC-AGTTCACTAGATGACTTAATCAAGACT 1423
| | | |||| ||||| | ||||||||||||| | |||||| ||||||||||||||||||
Sbjct 1309 ATGCT-CTGTACTACCTGAAGGTTCTTCACACGA-TTCACTGGATGACTTAATCAAGACT 1366
Query 1424 CTATGAACATTTACAAATAAAATT 1447
||||||||||||||||||||||||
Sbjct 1367 CTATGAACATTTACAAATAAAATT 1390
> Ahg494179 jgi|Araly1|494179|fgenesh2_kg.7__3612__AT5G37950.2
Length=1053
Score = 1434 bits (776), Expect = 0.0
Identities = 978/1072 (91%), Gaps = 28/1072 (3%)
Strand=Plus/Plus
Query 144 TGCAACTTGCAAGAGCCCT-TCACTTAAAGGGCTTCTCCATTACAGTTGCTCAAACCAAG 202
|||||||||| |||||||| | | |||||||| |||||||||||||||||||| || |||
Sbjct 2 TGCAACTTGCGAGAGCCCTAT-ATTTAAAGGGTTTCTCCATTACAGTTGCTCAGACAAAG 60
Query 203 TTCAATTACTTGAAGCCTTCAAAAGACTTAGCTGATTTTCAGTTTATCACCATCCCAGAG 262
||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 TTCAATTACTTAAACCCTTCAAAAGACTTGGCTGATTTTCAGTTTATCACCATCCCAGAG 120
Query 263 AGCTTACCAGCCTCGGATCTT-AAGAATCTAGGACCAGTTTGGTTTCTTCTTAAACTCAA 321
|||||||||||||||||| || ||||||||||| ||||||||||||||| ||||| ||||
Sbjct 121 AGCTTACCAGCCTCGGAT-TTGAAGAATCTAGGGCCAGTTTGGTTTCTTATTAAAATCAA 179
Query 322 TAAAGAGTGTGAGTTTAGCTTCAAGGAGTGTTTAGGTCAATTGTTGCTGCAAAAACAACT 381
|||||||||||| ||||||||||| ||||||| ||||| |||||| || ||||
Sbjct 180 CAAAGAGTGTGAGATTAGCTTCAAGAAGTGTTTGGGTCAGTTGTTGTTG------CAAC- 232
Query 382 TATACCGGAAGAAGAGATCGCTTGTGTCATCTACGACGAGTTCATGTACTTTGCTGAAGC 441
| | | ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 233 -A-A-C--AAGAAGAGATCGCATGTGTCATCTACGACGAGTTCATGTACTTTGCTGAAGC 287
Query 442 TGCAGCCAAAGAGTTTAACCTTCCCAAAGTTATTTTCAGTACCGAAAATGCGACGGCTTT 501
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 288 TGCAGCCAAAGAGTTTGACCTTCCCAAAGTTATTTTCAGTACCGAAAATGCAACGGCTTT 347
Query 502 TGCTTGTCGCTCTGCCATGTGCAAACTCTATGCAAAAGATGGTTTGGCTCCCCTTAAAGA 561
||||| |||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 348 TGCTTCTCGCTCTGCCATGTGCAAACTCTATGCAAAAGATGGCTTGGCTCCTCTCAAAGA 407
Query 562 AGGATGTGGGCGAGAAGAGGAGCTAGTGCCAAAGTTGCATCCCCTT-AGATACAAAGACC 620
||||||||| | || ||||||||||||||| |||||||| ||||| || ||||||||||
Sbjct 408 AGGATGTGGAAGTGAGGAGGAGCTAGTGCCAGAGTTGCAT-CCCTTAAGGTACAAAGACC 466
Query 621 TACCAACTTCAGCATTTGCACCAGTAGAAGCCTCAGTGGAAGTGTTTAAAAGTTCATGTG 680
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 467 TACCAACTTCAGCATTTGCACCAGTAGAAGCCTCAGTGGAAGTGTTTAAAAATTCATGTG 526
Query 681 ATAAAGGGACAGCTTCCGCTATGATAATCAACACAGTGAGGTGTCTAGAGATATCATCCT 740
| ||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||| |
Sbjct 527 AGAAAGGGACAGCTTCCTCTATGATAATCAACACAGTTCGGTGTCTAGAGATTTCATCTT 586
Query 741 TGGAGTGGCTTCAACAAGAACTTAAGATTCCGATATATCCTATAGGCCCTCTTCACATGG 800
|||||||||||||||||||||| || ||||| ||||||||| |||| |||||||||||||
Sbjct 587 TGGAGTGGCTTCAACAAGAACTCAAAATTCCAATATATCCTGTAGGACCTCTTCACATGG 646
Query 801 TTTCTTCAGCTCCTCCTACGAGTCTACTAGACGAGAATGAGAGTTGCATTGATTGGCTGA 860
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 647 TTTCTTCAGCTCCTCCTACGAGTCTACTAGAAGAGAATGAGAGTTGCATAGATTGGCTGA 706
Query 861 ACAAACAAAAGCCGAGCTCGGTGATTTACATAAGTTTGGGAAGCTTTACTTTGTTGGAAA 920
||||||||||||| ||||| ||||| |||||||| |||||||||||||||||| ||||||
Sbjct 707 ACAAACAAAAGCCAAGCTCAGTGATATACATAAGCTTGGGAAGCTTTACTTTGATGGAAA 766
Query 921 CTAAAGAAGTGTTGGAAATGGCTTC-GGGCTTGGTTAGTAGTAACCAACACTTCTTGTGG 979
|||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||
Sbjct 767 CTAAAGAAGTGTTGGAAATGGCTTTTGGG-TTGGTTAGTAGTAACCAATACTTCTTGTGG 825
Query 980 GTGATTCGACCCGGGTCCATACTTGGTTCTGAATTGA-CTAATGAGGAATTATTGAGTA- 1037
| ||| ||||| || |||||| ||||||||||||| | |||||||||||||||| ||||
Sbjct 826 GCGATCCGACCTGGCTCCATAGTTGGTTCTGAATT-ATCTAATGAGGAATTATTTAGTAC 884
Query 1038 TGATGGAAATACCGGATCGAGGCTACATTGTGAAATGGGCTCCACA-AAAGCAAGTGCTT 1096
| || |||||||||||||||||||||||||||||||||||||| || ||| |||||||||
Sbjct 885 T-ATTGAAATACCGGATCGAGGCTACATTGTGAAATGGGCTCCGCAGAAA-CAAGTGCTT 942
Query 1097 GCACATTCTGCGGTTGGAGCATTTTGGAGTCATTGTGGATGGAACTCGACTCTAGAGAGC 1156
|||||| ||||| || |||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 943 GCACATCCTGCGATTCGAGCGTTTTGGAGTCATTGTGGATGGAACTCGACCCTAGAGAGT 1002
Query 1157 ATGGGTGAAGG-AGTTCCGATGATTTGTAGGCCTTTTACTACTGATCAAAAG 1207
||||| ||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1003 ATGGGGGAAGGGA-TTCCGATGATTTGTAGGCCTTTTACTACTGATCAAAAG 1053
> Ahg494174 jgi|Araly1|494174|fgenesh2_kg.7__3607__AT5G38040.1
Length=1329
Score = 1083 bits (586), Expect = 0.0
Identities = 1113/1359 (82%), Gaps = 69/1359 (5%)
Strand=Plus/Plus
Query 85 gaggaggagaaggaTCGTGTTGATTCCCGCTCCAGCACAAGGACACATATCTCCGATGAT 144
|||||| |||||| | |||||| |||| |||||||| |||||||| ||| ||| |||||
Sbjct 18 GAGGAGAAGAAGGCTAGTGTTGGTTCCAGCTCCAGCTCAAGGACATATAAATCCAATGAT 77
Query 145 GCAACTTGCAAGAGCCCTTCACTTAAAGGGCTTCTCCATTACAGTTGCTCAAACCAAGTT 204
|||||| |||| | ||||| |||||||||| ||||| |||||||||||||||||||||||
Sbjct 78 GCAACTCGCAAAAACCCTTTACTTAAAGGGTTTCTCTATTACAGTTGCTCAAACCAAGTT 137
Query 205 CAATTACTTGAAGCCTTCAAAAGACTTAG-CTGATTTTCAGTTTATCACCATCCCAGAGA 263
||| ||||| || ||||||| || || | |||||||||||||| | |||||||||||||
Sbjct 138 CAACTACTTAAACCCTTCAAGTGA-TTTGTCTGATTTTCAGTTTGTAACCATCCCAGAGA 196
Query 264 GCTTACCAGCCTCGGATCTTAAGAATCTAGGACCAGTTTGGTTTCTT-CTTAAACTCA-A 321
|||||||| || |||||||||||||| ||||||| ||||| || |||| || |
Sbjct 197 ACTTACCAGTGTCTGATCTTAAGAATCTTGGACCAGGACGGTTT-TTGATTAAGCT-AGC 254
Query 322 TAAAGAGTGTGAGT-TTAGCTTCAAGGAG-TGTTTAGGTCAATTGTTGCTGCAAAAACAA 379
|||||||||| | | ||||||| || ||| || |||||||| || ||| |
Sbjct 255 TAAAGAGTGTTA-TGTTAGCTTTAAAGAGTTG-TTAGGTCAGTTATTG--G--------- 301
Query 380 CTTATACCGGAAGAAGAGATCGCTTGTGTCATCTACGACGAGTTCATGTACTTTGCTGAA 439
| || | ||||||||||||||||| |||||||| |||||||||||||||| ||||
Sbjct 302 --T-TA----ATGAAGAGATCGCTTGTGTTATCTACGATGAGTTCATGTACTTTGTTGAA 354
Query 440 GCTGCAGCCAAAGAGTTTAACCTTCCCAAAGTTATTTTCAGTACCGA-AAATGCGACGGC 498
|| |||| |||||||||| |||| || |||||||| |||| | | || ||| || ||
Sbjct 355 GCAGCAGTTGAAGAGTTTAAGCTTCGTAATGTTATTTTAAGTA-CTACAAGTGCAACAGC 413
Query 499 TTTTGCTTGTCGCTCTGCCATGTGCAAACTCTATGCAAAAGATGGTTTGGCTCCCCTTAA 558
||||| |||||||| || |||||||||||||||||||||||||||||||||| |||
Sbjct 414 TTTTGTTTGTCGCTTTGTTATGTGCAAACTCTATGCAAAAGATGGTTTGGCTCAACTT-- 471
Query 559 AGAAGGATGTGGGCGAGAAGAGGAGCTAGTGCCAAAGTTGCATCCCCT-TA-GATACAAA 616
| | |||||||||| |||| || |||| || ||| || | ||||||
Sbjct 472 ---A--A--------AGAAGAGGAGTTAGTACCGGAGTT--ATATCCTATACGGTACAAA 516
Query 617 GACCTACCAACTTCAGCATTTGCACCAGTAGAA-GCCTCAGTGGAAG-TGTTTAA-AAGT 673
|| ||||||| ||||| |||||| | || ||| | || |||| || ||||||| || |
Sbjct 517 GATCTACCAAGTTCAGTATTTGCTTCTGTCGAATG-TTCGGTGG-AGTTGTTTAAGAA-T 573
Query 674 TCATGTGATAAAGGGACAGCTTCCGCTATGATAATCAACACAGTGAGGTGTCTAGAGATA 733
||||| ||||||||||||||||| || |||||||||||||||| |||||||||||||
Sbjct 574 ACATGTTATAAAGGGACAGCTTCCTCTGTGATAATCAACACAGTTCGGTGTCTAGAGATC 633
Query 734 TCATCCTTGGAGTGGCTTCAACAAGAACTTA-AGATTCCGATATATCCTATAGGCCCTCT 792
||||| ||||| |||||||||||||||| || | |||||| | |||||||||||||||||
Sbjct 634 TCATCTTTGGATTGGCTTCAACAAGAAC-TAGATATTCCGGTGTATCCTATAGGCCCTCT 692
Query 793 TCACATGG-TTTCTTCAGCTCCTCCTACGAGTCTACTAGACGAGAATGAGAGTTGCATTG 851
|||||||| | ||| ||||| | ||||||||| |||| ||||||||||| ||||| |
Sbjct 693 TCACATGGCGGT-TTCTGCTCCGCGTACGAGTCTTTTAGAAGAGAATGAGAGCTGCATAG 751
Query 852 ATTGGCTGAACAAACAAAAGCCGAGCTCGGTGATTTACATAAGTTTGGGAAGCTTTACTT 911
| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 752 AATGGCTGAACAAACAAAAGCCGAGCTCGGTGATATACATAAGCTTGGGAAGCTTTACTA 811
Query 912 TGTTGGAAACTAAAGAAGTGTTGGAAATGGCTTCGGGCTTGGTTAGTAGTAACCAACACT 971
|| |||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||
Sbjct 812 TGATGGAAACTAAAGAAGTGTTGGAGATGGCTTCGGGGTTGGATAGTAGTAACCAACACT 871
Query 972 TCTTGTGGGTGATTCGACCCGGGTCCAT-ACTTGGTTCTGAATTGACTAATGAGGAATTA 1030
||||||||||||||||||| || ||| | | | ||||||||| | || | || || ||
Sbjct 872 TCTTGTGGGTGATTCGACCAGGATCCGTTAGT-GGTTCTGAAATCTCTGAGGAAGAGTTG 930
Query 1031 TTGA-GTATGATGGAAA-TACCGGATCGAGGCTACATTGTGAAATGGGCTCCACAAAAGC 1088
|||| | | ||||| || ||| | ||||||| ||||| ||||||||||| || || ||||
Sbjct 931 TTGAAGAA-GATGGTAACTACAG-ATCGAGGTTACATAGTGAAATGGGCGCCGCAGAAGC 988
Query 1089 AAGTGCTTGCACATTCTGCGGTTGGAGCATTTTGGAGTCATTGTGGATGGAACTCGACTC 1148
|||||||||||||||| |||||| |||| |||||||||||||| |||||||| |||||||
Sbjct 989 AAGTGCTTGCACATTCCGCGGTTAGAGCGTTTTGGAGTCATTGCGGATGGAATTCGACTC 1048
Query 1149 TAGAGAGCATGGGTGAAGGAGTTCCGATGATTTGTAGGCCTTTTACTACTGATCAAAAGG 1208
|||| ||| | |||||||||||||| ||||| ||||| |||||||| |||||||||||||
Sbjct 1049 TAGAAAGCCTCGGTGAAGGAGTTCCAATGATATGTAGACCTTTTACAACTGATCAAAAGG 1108
Query 1209 TAAATGCGCGGTA-TGTGGAGTGTGTCTGGAGAGTTGGGGTTCAAGTGGAGGGTGAACTA 1267
||||| |||| | |||| ||||| |||| ||| ||| ||||||| |||||||| |||
Sbjct 1109 GGAATGCAAGGTACT-TGGAATGTGTATGGAAAGTAGGGATTCAAGTAGAGGGTGAGCTA 1167
Query 1268 AAGAGAGGAGTAGTCGAGAGAGCTGTGAAGAGGTTACTGGTGGATGAAGAAGGAGAAGAG 1327
||||||| | ||||| | |||||||||||||||| |||| ||||||||||||||||||
Sbjct 1168 GAGAGAGGCGCGGTCGAAAAAGCTGTGAAGAGGTTAATGGTCGATGAAGAAGGAGAAGAG 1227
Query 1328 ATGAAGTTGA-GAGCTCTCAGTTTGAAAGAGAAACTCAAAGTTTCTGTTCTACCGGGAGG 1386
|||||| || ||||||| | |||||||||||||||||||| |||||| || | |||
Sbjct 1228 ATGAAGA-GAAGAGCTCTAAATTTGAAAGAGAAACTCAAAGACTCTGTTTTAGCTCAAGG 1286
Query 1387 TTCTTCACACAGTTCACTAGATGACTTAATCAAGACTCT 1425
|||||| | | ||||| |||||||| |||||||||||
Sbjct 1287 CTCTTCATATAACTCACTTGATGACTTCATCAAGACTCT 1325
> Ahg496094 jgi|Araly1|496094|fgenesh2_kg.8__1910__AT5G59590.1
Length=1452
Score = 388 bits (210), Expect = 5e-107
Identities = 1023/1400 (73%), Gaps = 118/1400 (8%)
Strand=Plus/Plus
Query 67 aatggaggaaaagca-agagaggaggagaaggaTCGTGTTGA-TTCCCGCTCCAGCACAA 124
|||||||||||| | || || || || |||||| ||||| | | || | ||||||||||
Sbjct 5 AATGGAGGAAAA-TAGAGTGAAGAAGACAAGGATAGTGTT-AGTACCAGTTCCAGCACAA 62
Query 125 GGACACATATCTCCGATGATGCAACT-TGCAAGAGCCCTTCACTTAAAGGGCTTCTCCAT 183
|| ||| || |||||||||||||||| | || ||| ||||||| |||||| ||||||||
Sbjct 63 GGTCACGTAACTCCGATGATGCAACTCGGGAA-AGCTCTTCACTCAAAGGGTTTCTCCAT 121
Query 184 TACAGTTGCTCAAACCA-AGT-TCAAT-TACTTGAAGC-CTTCAAAAGACTTAGCTGATT 239
|| |||| || | || ||| | ||| | || ||| |||| |||||||| ||||||
Sbjct 122 CACTGTTGTTCTGA-CACAGTAT-AATCGAGTT--AGCTCTTCCAAAGACTTCTCTGATT 177
Query 240 TTCAGTTT-ATCACCATCCCAGAG-AGCTTACCAGCCTCGGATCTTAAGAATCTAGGACC 297
|||| ||| |||||||||||| | |||||| | | |||||||| || || ||||||||
Sbjct 178 TTCA-TTTCCTCACCATCCCAG-GCAGCTTAACTGAGTCGGATCTCAAAAACCTAGGACC 235
Query 298 AGTTTGGTTTCTTCTTAAACTCAAT-AAAGAGTGTGAGTTTAGCTTCAAGGAGTGTTTAG 356
| ||| | || || |||||| ||| |||||| ||||||||| ||||| |||
Sbjct 236 ACAAAATTTTGTGCTCAAGCTCAATCAAA-TCTGTGAGGCAAGCTTCAAGCAGTGTATAG 294
Query 357 GTCAATTGTTGCTGCAAAAACAACTTATACCGGAAGAAGAGATCGCTTGTGTCATCTACG 416
||||| | |||| | ||||| | || | || || || |||||||| ||||||
Sbjct 295 GTCAACTATTGC-G--TGAACAA--TGTA----ATGATGATATTGCTTGTGTTGTCTACG 345
Query 417 ACGAGTTCATGTACTT-TGCTGAAGCTGCAG-CCAAAGAGTTT-AACCTTCCCAAAGTTA 473
| |||| ||||||||| | || | ||||||| | | |||||| || ||||||| ||
Sbjct 346 ATGAGTACATGTACTTCT-CTCATGCTGCAGTTC-AGGAGTTTCAA-CTTCCCAGTGTCG 402
Query 474 T-TTTCAGTACCGA-AAATGCGACGGCTTTTGCT-TGTCGCTCTGCCATGTGC-AAACTC 529
| ||| || | ||| || ||| || ||||||| | |||||||||| ||| | | | ||
Sbjct 403 TCTTT-AGCA-CGACAAGTGCTACTGCTTTTG-TCTGTCGCTCTGTTTTGT-CTAGAGTC 458
Query 530 TATGCAAAAGATGGTT-TGGCTC-CCCTTAAAGAAGGATGTGGGCGAGAAGA-GGAGCTA 586
| || || | || | | || | | |||| | || || |||| || ||
Sbjct 459 GACGC-GGAG-TCATTCTTGATCGACATGAAAG-ATCCTG-AAACG-CAAGACAAAG-TA 512
Query 587 GTGCCAAAGTTGCATCCCCTTAGATACAAAGACCTACCAACTTCAGCATTTGCACCAGTA 646
| ||| ||||||||| || || ||||| |||||||||||||||||||||| ||| ||
Sbjct 513 TTTCCAGGGTTGCATCCTCTAAGGTACAAGGACCTACCAACTTCAGCATTTGGGCCATTA 572
Query 647 -GAAGCCTCA-G-TGGAAGTGTTTAAAAGT-TCA-TGTG-ATAAAGGGACAGCTTCCGCT 700
| || | | | | ||| |||| | ||| | |||| | | | |||||||| |||
Sbjct 573 GGGAG--T-ACGCT-CAAG-GTTT-ACAGTGAGACTGTGAACACTCGAACAGCTTCTGCT 626
Query 701 ATGATAATCAACACAGTGAGGTGTCTAGAGATATCATCCTTGG-AGTGGCTT-CAACAAG 758
| || ||||| ||| || |||||||||| ||||| |||| | ||| || ||||||
Sbjct 627 GTTATCATCAATTCAGCAAGCTGTCTAGAGAGCTCATCTTTGGCA-TGG-TTGCAACAAC 684
Query 759 AACT-TAAGATTCCGA-TATATCCTATAGGCCCTCTTCACATGGTTTCTTCAGCTCCTCC 816
|||| ||| |||| | | | |||||||||||| |||||||| ||||||| |||
Sbjct 685 AACTACAAG-TTCC-AGTGTTTCCTATAGGCCCACTTCACATTACAGCTTCAGCGCCT-- 740
Query 817 TACGAGTCTACTAGACGA-GA-ATGAGAGTTGCATTGATTGGCTGAACAAACA-AAAGCC 873
| | ||| ||||||| || || | || ||||||||||| ||| ||||||| || ||| |
Sbjct 741 T-CTAGTTTACTAGAAGAGGACA-GA-AGTTGCATTGAGTGGTTGAACAAGCAGAAA-TC 796
Query 874 GAGCTCGGTGATTTACATAAGTTTGGGAAGCTTTACTTTGTTGGAAACTAAAGAAGTGTT 933
||||| || ||||||||||| ||||| ||||| || | | |||| |||||| ||||
Sbjct 797 AAGCTCAGTAATTTACATAAGCTTGGGTAGCTTGGCTCTAACGCAAACGAAAGAAATGTT 856
Query 934 GGAAATGGCTTCGGGCTTG-GTTAGTAGTAACCAACAC-TTCTTGTGGGTGATTCGACCC 991
||| ||||||| ||| ||| | || || | ||||| | ||||| |||||||| ||| ||
Sbjct 857 GGAGATGGCTTGGGGATTGAG-TAACAGCAGCCAAC-CTTTCTTATGGGTGATCCGA-CC 913
Query 992 GGG-TCCATACTTGGTTCTGAATTGACTA-A----TGAGGAAT--TATTGAGTATGATGG 1043
||| || | | ||| || |||| ||| | | | | | | ||| || | | |||
Sbjct 914 GGGTTCTGTTCCTGGCTCAGAATGGAC-AGAGTCCTTACCAGTGGAATTCAGCAAGTTGG 972
Query 1044 AAATACCGGATCGAGGCTACATTGTGAAATGGGCTCCACAAAAGCAAGTGCT-TGCACAT 1102
| | || | || || | |||||||||||| ||||| | | |||| || | ||||
Sbjct 973 ---TTGCAGAAAGGGGTTATACTGTGAAATGGGCACCACAGATGGAAGTTCTCAG-ACAT 1028
Query 1103 TCTGCGGTTGGAGCATTTTGGAGTCATTGTGGATGGAACTCGACTCTAGAGAGCAT-GGG 1161
||||||| |||| ||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 1029 CCTGCGGTAGGAGGGTTTTGGAGTCACTGTGGATGGAACTCGACGCTAGAGAGCATCGGG 1088
Query 1162 TGAAGGAGTTCCGATGATTTGTAGGCCTTTTACTACTGATCA-AAAGGTAAATGCGCGGT 1220
|||||||||||||||||||||||||||||||| ||||| |||| | ||||| |||
Sbjct 1089 -GAAGGAGTTCCGATGATTTGTAGGCCTTTTACCGGGGATCAGAAAG-TCAATGCAAGGT 1146
Query 1221 A-TGTGGAGTGTGTCTGGAGAGTTGGGGTTCAAGT-GGAGGGTGAACTAAAGAGAGGAG- 1277
| | | ||| | || |||||| |||||||||| || |||||| || || | | ||||
Sbjct 1147 ACT-TAGAGAGAGTTTGGAGAATTGGGGTTCA-GTTGGAGGGAGAGCTGGATAAAGGAAC 1204
Query 1278 TAGTCGAGAGAGCTGT-GAAGAGGTTACTGGTGGATGAAGAAGGAGAAGAGATGAAGTTG 1336
| || ||||||||| | || |||||| || |||||||||||||||| ||| |||| | |
Sbjct 1205 T-GTGGAGAGAGCTCTAGA-GAGGTTGCTTGTGGATGAAGAAGGAGCAGAAATGAGGAAG 1262
Query 1337 AGAGCTC-TC-AGTTTGAAAGAGAAACTCAAAGTTTCTGTTCT-ACCGGGAGGTTCTTCA 1393
||| | | | | || ||||||||| || ||| ||||| | | |||||||| |||
Sbjct 1263 AGAAC-CATTGACTT-GAAAGAGAAGCTTGAAGCCTCTGT-CAGAATTGGAGGTTCCTCA 1319
Query 1394 CACAGTTCACTAGATGACTT 1413
||| ||| |||| |||||
Sbjct 1320 TGCAGCTCATTAGACGACTT 1339
> Ahg347751 jgi|Araly1|347751|fgenesh1_pg.C_scaffold_5001143
Length=753
Score = 158 bits (85), Expect = 1e-37
Identities = 174/214 (81%), Gaps = 18/214 (8%)
Strand=Plus/Plus
Query 305 TTTCTTCTTAAACTCAATAAAGAGTGTGAGTTTAGCTTCAAGGAGTGTTTAGGTCAATTG 364
||||| ||||| ||||| | |||||| || | ||||||||||| || || ||||| |||
Sbjct 193 TTTCTGCTTAAGCTCAACATAGAGTGCCAGGTGAGCTTCAAGGACTGCTTGGGTCAGTTG 252
Query 365 TTGCTGCAAAAACAACTTATACCGGAAGAAGAGATCGCTTGTGTCATCTACGACGAGTTC 424
|||||| ||| | | | | | | |||||| | |||||||||||||||||||||
Sbjct 253 CTGCTGC---AAC-A---A-A---GTA-ATGAGATCTCATGTGTCATCTACGACGAGTTC 300
Query 425 ATGTACTTTGCTGAAGCTGCAGCCAAAGAGTTTAACCTTCCCAAA-GTTATTTTCAGTAC 483
|||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| ||
Sbjct 301 TTGTACTTTGCTGAAGCTGCAGCCAAAGAGTTTAAGCTTCC-AAACGTTATTTTCAGCAC 359
Query 484 CGAA-AA-TGCGACGGCTTTTGCTTGTCGCTCTG 515
|| || ||| |||||||||| |||||||||||
Sbjct 360 --AACAAGTGCCACGGCTTTTGTTTGTCGCTCTG 391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57021096765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5